pycom10g28670

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014681
Physical Location & Seq
Forward (+)
29176803 .. 29178073
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28670.2

Sequence Viewer

Length: 1110 bp
ATGTCGTTTTCAATTCCGTACTGGCTACTGATTTTAGTGACGATGTTAAAGAAGCCTTACTTTCTGAAAAGAAAGATCGATCATTCTCAACTCAATAATGAAACTAATGTCGTCCACAGAAGAAGAAATCGCCTTTATAGCATTAGCACTACCCCATGTCCATCATTCAAGAACCGCCTACAACAAAATGAAGCGGAATCTCAATGTCCTGTAGATTCTGATCCGCTCTATGTAAAACCACAATTCAGTCTAACGCAAGTACTTTTGTTGTTGATTGCGTACATTGGTGGAGGCACATTTTGCTTTTTCCTGATGAGGCATCAGATAAAGGGTAAGAAAACGAATGCGATTCTGGATTCCATGTACTTGTGTATAGTCACAATGAGCACTGTTGGTTACGGGGACCTTGTGCCAAATAGCATGTTGGCAAAGCTAGTTGCATGCGTTTATGTGTTCATCGGCATGGCCCTTGTTGGCATAATTCTTGGCAAGGCAGCAGATTACCTTGTAGAGAAGCAGGAAATCCTTTTGGTTAGAGCTATACATTTTCGCGAAAAATTTGGGCCACAGGAGCTTCTTAAGGAGGTTGAGACCGAAAAAGTCAAGTTCAAATGTATTACTGTCGGAATCCTTCTTTTGATTCTTATTATAGTAGGTACCGTCTTCTTATGTCTAGTTGAGAATCTGGAAGTTACGGATGCTCTCTATTGCGTTTGTTCCACTATAACTACACTAGGCTATGGGGACGAGAGTTTCTCAACGGGAGCTGGTCGTATTTTCGCTGTTTTTTGGATACTGAGCAGCACCATTTGTTTAGCACAGTTCTTTCTCTACCTTGCTGAACTATACACTGAAAGAAGGCAAAGATCACTTGTGAAGTGGGTTCTTACGAGGAGATTAACACCCTCAGATCTTGAGGAAGCAGATCTTGATCATGATAAAGTCGTTAGTGCGGCAGAGTTTATCGTATATAAGCTAAAGGAGATGGGGAAGATCAACCAGGAAGATATTGCACTGGTGATGGAAACGTTCAACAAACTTGACATCGATCATTCAGGAACTTTGACGGCATCTGATTTAATATCAATACCATCCCAACCAACAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

370

Amino Acids

41.74

Weight (kDa)

7.51

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00500 FvH4_3g00500
malus_domestica MD00G1057000.v1.1 MD10G1337300.v1.1
prunus_persica Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1
pyrus_communis pycom10g28670
rosa_chinensis RchiOBHm_Chr5g0000671
rosa_laevigata RLG00000030886
rosa_multiflora Rmu_sc0011992.1_g000010
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005600 Rh5BG007200 Rh5CG006000 Rh5DG006000
rosa_wichuraiana Rw5G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 656
AccB1I GGYRCC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 226
AccII CGCG 1 cut(s) 552
AciI CCGC 4 cut(s) 175, 194, 224, 953
AclI AACGTT 1 cut(s) 1028
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 557
AfaI GTAC 5 cut(s) 20, 261, 281, 365, 658
AflII CTTAAG 1 cut(s) 578
AgsI TTSAA 4 cut(s) 12, 169, 610, 1033
AjnI CCWGG 1 cut(s) 999
AluBI AGCT 5 cut(s) 433, 539, 574, 767, 976
AluI AGCT 5 cut(s) 433, 539, 574, 767, 976
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 1 cut(s) 215
AoxI GGCC 2 cut(s) 465, 563
ApeKI GCWGC 2 cut(s) 494, 801
ApoI RAATTY 1 cut(s) 557
Asp718I GGTACC 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 403, 466, 563
AsuHPI GGTGA 1 cut(s) 1030
AvaII GGWCC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 655
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 506, 813
BccI CCATC 4 cut(s) 169, 979, 1015, 1099
BceAI ACGGC 1 cut(s) 1083
BciT130I CCWGG 1 cut(s) 1001
BciVI GTATCC 1 cut(s) 786
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 3 cut(s) 434, 674, 734
BfmI CTRYAG 1 cut(s) 210
BfrI CTTAAG 1 cut(s) 578
BfuI GTATCC 1 cut(s) 786
BglII AGATCT 2 cut(s) 910, 925
BisI GCNGC 3 cut(s) 495, 802, 954
BlsI GCNGC 3 cut(s) 496, 803, 955
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 1001
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 3 cut(s) 403, 466, 563
BmiI GGNNCC 2 cut(s) 404, 658
BmrFI CCNGG 1 cut(s) 1001
BmsI GCATC 3 cut(s) 328, 688, 1079
BpiI GAAGAC 1 cut(s) 655
BplI GAGNNNNNCTC 2 cut(s) 740, 772
BpuEI CTTGAG 1 cut(s) 935
Bsa29I ATCGAT 2 cut(s) 78, 1047
BsaBI GATNNNNATC 2 cut(s) 219, 930
BsaI GGTCTC 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 26, 1020
Bse8I GATNNNNATC 2 cut(s) 219, 930
BseBI CCWGG 1 cut(s) 1001
BseCI ATCGAT 2 cut(s) 78, 1047
BseGI GGATG 2 cut(s) 703, 1091
BseJI GATNNNNATC 2 cut(s) 219, 930
BseMII CTCAG 2 cut(s) 788, 921
BseNI ACTGG 2 cut(s) 26, 1020
BseRI GAGGAG 1 cut(s) 907
BseXI GCAGC 2 cut(s) 506, 813
Bsh1236I CGCG 1 cut(s) 552
BshFI GGCC 2 cut(s) 467, 565
BshNI GGYRCC 1 cut(s) 656
BshVI ATCGAT 2 cut(s) 78, 1047
BsiHKAI GWGCWC 1 cut(s) 389
BslFI GGGAC 2 cut(s) 416, 758
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 2 cut(s) 416, 758
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 467, 565
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 389
Bsp143I GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Bsp68I TCGCGA 1 cut(s) 552
BspACI CCGC 4 cut(s) 175, 194, 224, 953
BspANI GGCC 2 cut(s) 467, 565
BspCNI CTCAG 2 cut(s) 789, 920
BspDI ATCGAT 2 cut(s) 78, 1047
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 2 cut(s) 404, 658
BspPI GGATC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 656
BspTI CTTAAG 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 226
BsrI ACTGG 2 cut(s) 26, 1020
BssMI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Bst2UI CCWGG 1 cut(s) 1001
Bst4CI ACNGT 4 cut(s) 391, 622, 661, 822
BstAFI CTTAAG 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 442
BstDEI CTNAG 2 cut(s) 797, 907
BstF5I GGATG 2 cut(s) 703, 1091
BstFNI CGCG 1 cut(s) 552
BstKTI GATC 9 cut(s) 78, 82, 223, 869, 913, 928, 934, 996, 1051
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 138, 300, 571
BstNI CCWGG 1 cut(s) 1001
BstNSI RCATGY 2 cut(s) 424, 444
BstSCI CCNGG 1 cut(s) 999
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 552
BstV1I GCAGC 2 cut(s) 506, 813
BstV2I GAAGAC 1 cut(s) 655
BstX2I RGATCY 2 cut(s) 910, 925
BstYI RGATCY 2 cut(s) 910, 925
Bsu15I ATCGAT 2 cut(s) 78, 1047
BsuI GTATCC 1 cut(s) 786
BsuRI GGCC 2 cut(s) 467, 565
BsuTUI ATCGAT 2 cut(s) 78, 1047
BtsCI GGATG 2 cut(s) 703, 1091
BtsIMutI CAGTG 3 cut(s) 387, 849, 1013
BtuMI TCGCGA 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 442
CciI TCATGA 1 cut(s) 934
Cfr13I GGNCC 3 cut(s) 403, 466, 563
ClaI ATCGAT 2 cut(s) 78, 1047
Csp6I GTAC 5 cut(s) 19, 260, 280, 364, 657
CviAII CATG 6 cut(s) 156, 361, 421, 441, 463, 935
CviQI GTAC 5 cut(s) 19, 260, 280, 364, 657
DdeI CTNAG 2 cut(s) 797, 907
DpnI GATC 9 cut(s) 77, 81, 222, 868, 912, 927, 933, 995, 1050
DpnII GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 403
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 999
FaeI CATG 6 cut(s) 159, 364, 424, 444, 466, 938
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 912, 944
FaqI GGGAC 2 cut(s) 416, 758
FatI CATG 6 cut(s) 155, 360, 420, 440, 462, 934
FbaI TGATCA 1 cut(s) 931
Fnu4HI GCNGC 3 cut(s) 495, 802, 954
FokI GGATG 2 cut(s) 710, 1078
Fsp4HI GCNGC 3 cut(s) 495, 802, 954
FspBI CTAG 3 cut(s) 434, 674, 734
GluI GCNGC 3 cut(s) 495, 802, 954
HaeIII GGCC 2 cut(s) 467, 565
Hin1II CATG 6 cut(s) 159, 364, 424, 444, 466, 938
HinfI GANTC 7 cut(s) 197, 215, 349, 356, 627, 640, 682
HphI GGTGA 1 cut(s) 1030
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 6 cut(s) 66, 220, 324, 626, 910, 1075
Hpy188III TCNNGA 9 cut(s) 169, 310, 353, 551, 686, 914, 929, 935, 1056
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 641, 852
HpyCH4III ACNGT 4 cut(s) 391, 622, 661, 822
HpyCH4IV ACGT 1 cut(s) 1028
HpyCH4V TGCA 2 cut(s) 440, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 300, 571
HpyF3I CTNAG 2 cut(s) 797, 907
HpySE526I ACGT 1 cut(s) 1028
Hsp92II CATG 6 cut(s) 159, 364, 424, 444, 466, 938
KpnI GGTACC 1 cut(s) 660
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
LmnI GCTCC 2 cut(s) 571, 764
Lsp1109I GCAGC 2 cut(s) 506, 813
LweI GCATC 3 cut(s) 328, 688, 1079
MaeI CTAG 3 cut(s) 434, 674, 734
MaeII ACGT 1 cut(s) 1028
MaeIII GTNAC 4 cut(s) 37, 376, 395, 691
MalI GATC 9 cut(s) 77, 81, 222, 868, 912, 927, 933, 995, 1050
MbiI CCGCTC 1 cut(s) 226
MboI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
MboII GAAGA 5 cut(s) 132, 135, 655, 1003, 1016
MflI RGATCY 2 cut(s) 910, 925
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 4 cut(s) 12, 242, 480, 557
MmeI TCCRAC 1 cut(s) 604
MnlI CCTC 6 cut(s) 284, 309, 577, 885, 910, 916
MseI TTAA 5 cut(s) 47, 579, 899, 1079, 1108
MslI CAYNNNNRTG 1 cut(s) 461
MspCI CTTAAG 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 1001
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 1001
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 3 cut(s) 138, 300, 571
NdeII GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
NlaIII CATG 6 cut(s) 159, 364, 424, 444, 466, 938
NlaIV GGNNCC 2 cut(s) 404, 658
NmuCI GTSAC 2 cut(s) 37, 376
NruI TCGCGA 1 cut(s) 552
NspI RCATGY 2 cut(s) 424, 444
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 934
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 7 cut(s) 197, 215, 349, 356, 627, 640, 682
PkrI GCNGC 3 cut(s) 496, 803, 955
PpuMI RGGWCCY 1 cut(s) 403
Psp1406I AACGTT 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 999
PspGI CCWGG 1 cut(s) 999
PspN4I GGNNCC 2 cut(s) 404, 658
PspPI GGNCC 3 cut(s) 403, 466, 563
PspPPI RGGWCCY 1 cut(s) 403
PsuI RGATCY 2 cut(s) 910, 925
RruI TCGCGA 1 cut(s) 552
RsaI GTAC 5 cut(s) 20, 261, 281, 365, 658
RsaNI GTAC 5 cut(s) 19, 260, 280, 364, 657
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 5 cut(s) 47, 579, 899, 1079, 1108
SatI GCNGC 3 cut(s) 495, 802, 954
Sau3AI GATC 9 cut(s) 75, 79, 220, 866, 910, 925, 931, 993, 1048
Sau96I GGNCC 3 cut(s) 403, 466, 563
ScaI AGTACT 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 1001
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 3 cut(s) 328, 688, 1079
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 403
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 2 cut(s) 578, 914
SmoI CTYRAG 2 cut(s) 578, 914
SphI GCATGC 1 cut(s) 444
Sse9I AATT 4 cut(s) 12, 242, 480, 557
SsiI CCGC 4 cut(s) 175, 194, 224, 953
SspMI CTAG 3 cut(s) 434, 674, 734
StyD4I CCNGG 1 cut(s) 999
TaaI ACNGT 4 cut(s) 391, 622, 661, 822
TaiI ACGT 1 cut(s) 1031
TaqI TCGA 2 cut(s) 78, 1047
TaqII GACCGA 1 cut(s) 608
TasI AATT 4 cut(s) 12, 242, 480, 557
TatI WGTACW 2 cut(s) 259, 363
TauI GCSGC 1 cut(s) 956
TfiI GAWTC 7 cut(s) 197, 215, 349, 356, 627, 640, 682
Tru1I TTAA 5 cut(s) 47, 579, 899, 1079, 1108
Tru9I TTAA 5 cut(s) 47, 579, 899, 1079, 1108
TscAI CASTG 3 cut(s) 394, 856, 1020
TseFI GTSAC 2 cut(s) 37, 376
TseI GCWGC 2 cut(s) 494, 801
Tsp45I GTSAC 2 cut(s) 37, 376
TspDTI ATGAA 3 cut(s) 114, 204, 445
TspGWI ACGGA 2 cut(s) 6, 710
TspRI CASTG 3 cut(s) 394, 856, 1020
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 557
XceI RCATGY 2 cut(s) 424, 444
XspI CTAG 3 cut(s) 434, 674, 734
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.