RLG00000030886

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014681
Physical Location & Seq
Reverse (-)
440244 .. 441413
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030886

Sequence Viewer

Length: 960 bp
ATGGCTAGTGATCATGATGTTGAACAAGCCTTACTTTCTGAGATTAACGATCGTTCTCAACTTAGTAACGAAAAGAATGTAGTCGTCAAGAGAAGAAAAAACCGCCAAGATAAAAACCACCTCAACCAAAATGAAGTAGTAATACAGACTCCTGCAGATTGTGAGCCAATGAATCAGATTAAAGGCGAAAAAACAAATCCAATTCTTGATTCCATGTACTTGTGTGTAGTCACAATGAGCACTGTAGGATATGGAGACCTTGTTCCCAATAGCCCAATGGCAAAGCTACTTGCGTGTATTTTTGTGTTCTCTGGAATGGCTCTTATTGGTTTGATTCTTGGCAAGGCAGCAGATTACATTGTAGAGAAGCAGGAGGTGCTTTTGGTTAGGGCCATACACTTCCAAGAAAAAGTTGGCCCTGCCGAGCTTCTTAAGGAGGTTGAATTAGACAAAAGCAAGTTCAAATGTATTACTGCAGGAATCCTTCTTGTGTTACTTTTTGTAATTGGAACTGTGTTCTTGTGTGTGGTTGAGGAACTGGAAGTTTTGGATGCTATCTATTGCGTTTGTTCCACCATTACTACTCTCGGTTACGGGGATAAGAGCTTCTCAACTGCAGCTGGTCGAAGTTTTGCTGTGTTGTGGATAATTTCAAGTACAGTTTGCTTAGCACAATTCTATCTCTACCTTGCTGAACTCTACACTGAAAGAAGGCAGAGATCACTCGTCAGGTGGGTGCTTACTCGAAGATTGACGCCCTCCGATCTTGAAGAAGCAGATCTTGATCATGATAAAGTCGTCAGCGCTTCCGAGTTTGTGATATATAAGTTGAAGGAAATGGGGAAGATCAGCCAGGAGGATGTTTCACTTGTCATGGAAACTTTCAAGAAGCTTGACATTGATCACTCAGGAACTTTGACAGCATCTGATCTATTACCGCCAACATCCCGTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

320

Amino Acids

35.63

Weight (kDa)

5.3

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 66 - 124 6.1e-06 Ion transport protein
Ion_trans_2 PF07885 67 - 121 6.8e-15 Ion channel
Ion_trans_2 PF07885 161 - 235 2.2e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00500 FvH4_3g00500
malus_domestica MD00G1057000.v1.1 MD10G1337300.v1.1
prunus_persica Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1
pyrus_communis pycom10g28670
rosa_chinensis RchiOBHm_Chr5g0000671
rosa_laevigata RLG00000030886
rosa_multiflora Rmu_sc0011992.1_g000010
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005600 Rh5BG007200 Rh5CG006000 Rh5DG006000
rosa_wichuraiana Rw5G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 103, 938
AcyI GRCGYC 1 cut(s) 755
AfaI GTAC 2 cut(s) 218, 658
AfeI AGCGCT 1 cut(s) 805
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 7 cut(s) 23, 443, 463, 654, 770, 832, 886
AjnI CCWGG 1 cut(s) 852
AjuI GAANNNNNNNTTGG 2 cut(s) 193, 225
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 6 cut(s) 286, 427, 606, 620, 892, 956
AluI AGCT 6 cut(s) 286, 427, 606, 620, 892, 956
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 926
Aor51HI AGCGCT 1 cut(s) 805
AoxI GGCC 2 cut(s) 390, 415
ApeKI GCWGC 2 cut(s) 347, 617
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 2 cut(s) 390, 416
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 359, 629
BciT130I CCWGG 1 cut(s) 854
BclI TGATCA 3 cut(s) 10, 784, 901
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 4 cut(s) 153, 243, 474, 615
BfoI RGCGCY 1 cut(s) 807
BfrI CTTAAG 1 cut(s) 431
BglII AGATCT 1 cut(s) 778
BisI GCNGC 2 cut(s) 348, 618
BlpI GCTNAGC 1 cut(s) 667
BlsI GCNGC 2 cut(s) 349, 619
Bme1390I CCNGG 1 cut(s) 854
BmgT120I GGNCC 2 cut(s) 390, 416
BmrFI CCNGG 1 cut(s) 854
BmsI GCATC 2 cut(s) 541, 932
Bpu1102I GCTNAGC 1 cut(s) 667
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 755
BsaI GGTCTC 1 cut(s) 249
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 543
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 1 cut(s) 854
BseGI GGATG 3 cut(s) 556, 865, 944
BseJI GATNNNNATC 1 cut(s) 783
BseMII CTCAG 2 cut(s) 30, 921
BseNI ACTGG 1 cut(s) 543
BseXI GCAGC 2 cut(s) 359, 629
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 392, 417
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 2 cut(s) 392, 417
Bso31I GGTCTC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
Bsp1720I GCTNAGC 1 cut(s) 667
BspACI CCGC 2 cut(s) 103, 938
BspANI GGCC 2 cut(s) 392, 417
BspCNI CTCAG 2 cut(s) 31, 920
BspHI TCATGA 2 cut(s) 13, 787
BspMAI CTGCAG 3 cut(s) 157, 478, 619
BspTI CTTAAG 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 543
BssMI GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
BssNI GRCGYC 1 cut(s) 755
Bst2UI CCWGG 1 cut(s) 854
Bst4CI ACNGT 3 cut(s) 244, 514, 661
BstACI GRCGYC 1 cut(s) 755
BstAFI CTTAAG 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 376
BstDEI CTNAG 5 cut(s) 39, 62, 667, 907, 957
BstF5I GGATG 3 cut(s) 556, 865, 944
BstH2I RGCGCY 1 cut(s) 807
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 9 cut(s) 13, 52, 722, 766, 781, 787, 849, 904, 931
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 1 cut(s) 854
BstSCI CCNGG 1 cut(s) 852
BstSFI CTRYAG 4 cut(s) 153, 243, 474, 615
BstV1I GCAGC 2 cut(s) 359, 629
BstX2I RGATCY 1 cut(s) 778
BstYI RGATCY 1 cut(s) 778
BsuRI GGCC 2 cut(s) 392, 417
BtsCI GGATG 3 cut(s) 556, 865, 944
BtsIMutI CAGTG 2 cut(s) 240, 702
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 2 cut(s) 13, 787
CfoI GCGC 1 cut(s) 806
Cfr13I GGNCC 2 cut(s) 390, 416
CseI GACGC 1 cut(s) 763
Csp6I GTAC 2 cut(s) 217, 657
CviAII CATG 4 cut(s) 14, 214, 788, 874
CviQI GTAC 2 cut(s) 217, 657
DdeI CTNAG 5 cut(s) 39, 62, 667, 907, 957
DpnI GATC 9 cut(s) 12, 51, 721, 765, 780, 786, 848, 903, 930
DpnII GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
Eco31I GGTCTC 1 cut(s) 249
Eco47III AGCGCT 1 cut(s) 805
EcoRII CCWGG 1 cut(s) 852
FaeI CATG 4 cut(s) 17, 217, 791, 877
FaiI YATR 8 cut(s) 15, 215, 252, 395, 789, 823, 825, 875
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 765, 797
FatI CATG 4 cut(s) 13, 213, 787, 873
FbaI TGATCA 3 cut(s) 10, 784, 901
Fnu4HI GCNGC 2 cut(s) 348, 618
FokI GGATG 3 cut(s) 563, 872, 931
Fsp4HI GCNGC 2 cut(s) 348, 618
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 805
GluI GCNGC 2 cut(s) 348, 618
HaeII RGCGCY 1 cut(s) 807
HaeIII GGCC 2 cut(s) 392, 417
HgaI GACGC 1 cut(s) 763
HhaI GCGC 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 755
Hin1II CATG 4 cut(s) 17, 217, 791, 877
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HindIII AAGCTT 2 cut(s) 890, 954
HinfI GANTC 5 cut(s) 148, 172, 209, 334, 480
Hpy188I TCNGA 5 cut(s) 40, 177, 763, 811, 928
Hpy188III TCNNGA 9 cut(s) 14, 88, 206, 312, 767, 782, 788, 886, 909
HpyAV CCTTC 3 cut(s) 494, 705, 826
HpyCH4III ACNGT 3 cut(s) 244, 514, 661
HpyCH4V TGCA 3 cut(s) 155, 476, 617
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 5 cut(s) 39, 62, 667, 907, 957
Hsp92I GRCGYC 1 cut(s) 755
Hsp92II CATG 4 cut(s) 17, 217, 791, 877
HspAI GCGC 1 cut(s) 804
Ksp22I TGATCA 3 cut(s) 10, 784, 901
Kzo9I GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
Lsp1109I GCAGC 2 cut(s) 359, 629
LweI GCATC 2 cut(s) 541, 932
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 4 cut(s) 65, 229, 492, 590
MalI GATC 9 cut(s) 12, 51, 721, 765, 780, 786, 848, 903, 930
MboI GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
MboII GAAGA 4 cut(s) 105, 759, 782, 856
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 5 cut(s) 201, 443, 504, 648, 674
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 6 cut(s) 131, 367, 430, 526, 769, 850
MseI TTAA 3 cut(s) 45, 180, 432
MspA1I CMGCKG 1 cut(s) 620
MspCI CTTAAG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 854
MvaI CCWGG 1 cut(s) 854
MwoI GCNNNNNNNGC 1 cut(s) 376
NdeII GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
NlaIII CATG 4 cut(s) 17, 217, 791, 877
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 229
PagI TCATGA 2 cut(s) 13, 787
PfeI GAWTC 4 cut(s) 172, 209, 334, 480
PkrI GCNGC 2 cut(s) 349, 619
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 852
PspGI CCWGG 1 cut(s) 852
PspPI GGNCC 2 cut(s) 390, 416
PsrI GAACNNNNNNTAC 2 cut(s) 15, 47
PstI CTGCAG 3 cut(s) 157, 478, 619
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 778
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 2 cut(s) 218, 658
RsaNI GTAC 2 cut(s) 217, 657
SaqAI TTAA 3 cut(s) 45, 180, 432
SatI GCNGC 2 cut(s) 348, 618
Sau3AI GATC 9 cut(s) 10, 49, 719, 763, 778, 784, 846, 901, 928
Sau96I GGNCC 2 cut(s) 390, 416
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 854
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 2 cut(s) 541, 932
SfcI CTRYAG 4 cut(s) 153, 243, 474, 615
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 5 cut(s) 201, 443, 504, 648, 674
SsiI CCGC 2 cut(s) 103, 938
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 852
TaaI ACNGT 3 cut(s) 244, 514, 661
TaqI TCGA 2 cut(s) 625, 745
TasI AATT 5 cut(s) 201, 443, 504, 648, 674
TatI WGTACW 2 cut(s) 216, 656
TfiI GAWTC 4 cut(s) 172, 209, 334, 480
Tru1I TTAA 3 cut(s) 45, 180, 432
Tru9I TTAA 3 cut(s) 45, 180, 432
TscAI CASTG 2 cut(s) 247, 709
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 2 cut(s) 347, 617
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 147, 185
TspRI CASTG 2 cut(s) 247, 709
Vha464I CTTAAG 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 2 cut(s) 274, 410
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.