Rh5BG007200

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014681
Physical Location & Seq
Reverse (-)
516394 .. 519031
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG007200.1

Sequence Viewer

Length: 1050 bp
ATGGCTAGTGATCATGATGTTAAACAAGCCTTGCTTTCTGAGAAGAACGATCGTTCTCAACTTAGTAACGAAAAGAATGTAGTCGTCAAGAGAAGAAAAAACCGCCAAGATAAAAACCACCTCAACCAAAATGAAGTAGTAATACAGACTCCTGCAGATTGTGAGCCAATGTATGTGAAACCACAGTTTAGTTTCAAGCAAGTGGTCTTGATGTTGATTTCATACATAGGTGGAGGCACCTTCTGTTTTTTCCTGGTCAGGAATCAGATTAAAGGCGAAAAAACAAATCCAATTCTTGATTCCATGTACTTGTGTGTAGTCACAATGAGCACTGTAGGATATGGAGACCTTGTTCCCAATAGCCCAATGGCAAAGCTACTTGCGTGTATTTTTGTGTTCTCTGGAATGGCTCTTGTTGGTTTGATTCTTGGCAAGGCAGCAGATTACATTGTAGAGAAGCAGGAGGTGCTTTTGGTTAGGGCCATACACTTCCACGAAAAAGTTGGCCCTGCCGAGCTTCTTAAGGAGGTTGAATTAGACAAAGTCAAGTTCAAATGTATTACTGCAGGAATCCTTCTTGTGTTACTTTTTGTAATTGGAACTGTGTTCTTGTGTGTGGTTGAGGAACTGGAAGTTTTGGATGCTATCTATTGCGTTTGTTCCACCATTACTACTCTCGGTTACGGGGATAAGAGCTTCTCAACTGCAGCTGGTCGAAGTTTTGCTGTGTTGTGGATAATTTCAAGTACAGTTTGCTTAGCACAATTCTATCTCTACCTTGCTGAACTCTACACTGAAAGAAGGCAGAGATCACTCGTCAGGTGGGTGCTTACTCGAAGATTGACGCCCTCCGACCTTGAAGAAGCAGATCTTGATCATGATAAAGTCGTCAGTGCTTCCGAGTTTGTGATATATAAGTTGAAGGAAATGGGGAAGATCAGCCAGGAGGATGTTTCACTTGTCATGGAAACTTTCAAGAAGCTTGACATTGATCACTCAGGAACTTTGACAGCATCTGATCTATTACCGCCAACATCCCGTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006873 GO:0006875 GO:0008150 GO:0008324 GO:0009705 GO:0009987 GO:0010029 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016043 GO:0019725 GO:0022607 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022840 GO:0022841 GO:0022842 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030007 GO:0030322 GO:0031004 GO:0031090 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0048580 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051239 GO:0051259 GO:0051260 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065003 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071840 GO:0071944 GO:0090533 GO:0098533 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098796 GO:0098805 GO:0099094 GO:1900140 GO:1902494 GO:1902495 GO:1904949 GO:1990351 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

349

Amino Acids

39.12

Weight (kDa)

6.34

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 71 - 151 4e-16 Ion channel
Ion_trans PF00520 88 - 154 3.6e-06 Ion transport protein
Ion_trans_2 PF07885 191 - 265 2.5e-13 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014681)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00500 FvH4_3g00500
malus_domestica MD00G1057000.v1.1 MD10G1337300.v1.1
prunus_persica Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1 Prupe.4G005900_v2.0.a1
pyrus_communis pycom10g28670
rosa_chinensis RchiOBHm_Chr5g0000671
rosa_laevigata RLG00000030886
rosa_multiflora Rmu_sc0011992.1_g000010
rosa_rugosa Rorug04G0385500
rosa_samantha Rh5AG005600 Rh5BG007200 Rh5CG006000 Rh5DG006000
rosa_wichuraiana Rw5G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 2 cut(s) 103, 1028
AcyI GRCGYC 1 cut(s) 845
AfaI GTAC 2 cut(s) 308, 748
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 7 cut(s) 196, 533, 553, 744, 860, 922, 976
AjnI CCWGG 2 cut(s) 252, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 283, 315
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 6 cut(s) 376, 517, 696, 710, 982, 1046
AluI AGCT 6 cut(s) 376, 517, 696, 710, 982, 1046
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 1016
AoxI GGCC 2 cut(s) 480, 505
ApeKI GCWGC 2 cut(s) 437, 707
AspS9I GGNCC 2 cut(s) 480, 506
BanI GGYRCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
Bbv12I GWGCWC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 449, 719
BciT130I CCWGG 2 cut(s) 254, 944
BclI TGATCA 3 cut(s) 10, 874, 991
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 4 cut(s) 153, 333, 564, 705
BfrI CTTAAG 1 cut(s) 521
BglII AGATCT 1 cut(s) 868
BisI GCNGC 2 cut(s) 438, 708
BlpI GCTNAGC 1 cut(s) 757
BlsI GCNGC 2 cut(s) 439, 709
Bme1390I CCNGG 2 cut(s) 254, 944
BmgT120I GGNCC 2 cut(s) 480, 506
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 254, 944
BmsI GCATC 2 cut(s) 631, 1022
Bpu1102I GCTNAGC 1 cut(s) 757
BsaBI GATNNNNATC 1 cut(s) 873
BsaHI GRCGYC 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bse1I ACTGG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 2 cut(s) 254, 944
BseGI GGATG 3 cut(s) 646, 955, 1034
BseJI GATNNNNATC 1 cut(s) 873
BseMII CTCAG 2 cut(s) 30, 1011
BseNI ACTGG 1 cut(s) 633
BseXI GCAGC 2 cut(s) 449, 719
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 482, 507
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 482, 507
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
Bsp1720I GCTNAGC 1 cut(s) 757
BspACI CCGC 2 cut(s) 103, 1028
BspANI GGCC 2 cut(s) 482, 507
BspCNI CTCAG 2 cut(s) 31, 1010
BspHI TCATGA 2 cut(s) 13, 877
BspLI GGNNCC 1 cut(s) 238
BspMAI CTGCAG 3 cut(s) 157, 568, 709
BspT107I GGYRCC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 633
BssMI GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
BssNI GRCGYC 1 cut(s) 845
Bst2UI CCWGG 2 cut(s) 254, 944
Bst4CI ACNGT 4 cut(s) 186, 334, 604, 751
BstACI GRCGYC 1 cut(s) 845
BstAFI CTTAAG 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 466
BstDEI CTNAG 5 cut(s) 39, 62, 757, 997, 1047
BstF5I GGATG 3 cut(s) 646, 955, 1034
BstKTI GATC 8 cut(s) 13, 52, 812, 871, 877, 939, 994, 1021
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 466
BstNI CCWGG 2 cut(s) 254, 944
BstSCI CCNGG 2 cut(s) 252, 942
BstSFI CTRYAG 4 cut(s) 153, 333, 564, 705
BstV1I GCAGC 2 cut(s) 449, 719
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BsuRI GGCC 2 cut(s) 482, 507
BtsCI GGATG 3 cut(s) 646, 955, 1034
BtsIMutI CAGTG 3 cut(s) 330, 792, 898
CaiI CAGNNNCTG 1 cut(s) 1016
CciI TCATGA 2 cut(s) 13, 877
Cfr13I GGNCC 2 cut(s) 480, 506
CseI GACGC 1 cut(s) 853
Csp6I GTAC 2 cut(s) 307, 747
CviAII CATG 4 cut(s) 14, 304, 878, 964
CviQI GTAC 2 cut(s) 307, 747
DdeI CTNAG 5 cut(s) 39, 62, 757, 997, 1047
DpnI GATC 8 cut(s) 12, 51, 811, 870, 876, 938, 993, 1020
DpnII GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
Eco31I GGTCTC 1 cut(s) 339
EcoRII CCWGG 2 cut(s) 252, 942
FaeI CATG 4 cut(s) 17, 307, 881, 967
FalI AAGNNNNNCTT 4 cut(s) 18, 50, 855, 887
FatI CATG 4 cut(s) 13, 303, 877, 963
FbaI TGATCA 3 cut(s) 10, 874, 991
Fnu4HI GCNGC 2 cut(s) 438, 708
FokI GGATG 3 cut(s) 653, 962, 1021
Fsp4HI GCNGC 2 cut(s) 438, 708
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 438, 708
HaeIII GGCC 2 cut(s) 482, 507
HgaI GACGC 1 cut(s) 853
Hin1I GRCGYC 1 cut(s) 845
Hin1II CATG 4 cut(s) 17, 307, 881, 967
HindIII AAGCTT 2 cut(s) 980, 1044
HinfI GANTC 5 cut(s) 148, 262, 299, 424, 570
Hpy188I TCNGA 5 cut(s) 40, 267, 853, 901, 1018
HpyAV CCTTC 4 cut(s) 250, 584, 795, 916
HpyCH4III ACNGT 4 cut(s) 186, 334, 604, 751
HpyCH4V TGCA 3 cut(s) 155, 566, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 466
HpyF3I CTNAG 5 cut(s) 39, 62, 757, 997, 1047
Hsp92I GRCGYC 1 cut(s) 845
Hsp92II CATG 4 cut(s) 17, 307, 881, 967
Ksp22I TGATCA 3 cut(s) 10, 874, 991
Kzo9I GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
Lsp1109I GCAGC 2 cut(s) 449, 719
LweI GCATC 2 cut(s) 631, 1022
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 4 cut(s) 65, 319, 582, 680
MalI GATC 8 cut(s) 12, 51, 811, 870, 876, 938, 993, 1020
MboI GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
MboII GAAGA 5 cut(s) 55, 105, 849, 872, 946
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 5 cut(s) 291, 533, 594, 738, 764
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 876
MnlI CCTC 7 cut(s) 131, 227, 457, 520, 616, 859, 940
MseI TTAA 3 cut(s) 21, 270, 522
MspA1I CMGCKG 1 cut(s) 710
MspCI CTTAAG 1 cut(s) 521
MspR9I CCNGG 2 cut(s) 254, 944
MvaI CCWGG 2 cut(s) 254, 944
MwoI GCNNNNNNNGC 1 cut(s) 466
NdeII GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
NlaIII CATG 4 cut(s) 17, 307, 881, 967
NlaIV GGNNCC 1 cut(s) 238
NmeAIII GCCGAG 1 cut(s) 538
NmuCI GTSAC 1 cut(s) 319
PagI TCATGA 2 cut(s) 13, 877
PfeI GAWTC 4 cut(s) 262, 299, 424, 570
PflFI GACNNNGTC 1 cut(s) 542
PkrI GCNGC 2 cut(s) 439, 709
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 252, 942
PspGI CCWGG 2 cut(s) 252, 942
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 480, 506
PstI CTGCAG 3 cut(s) 157, 568, 709
PstNI CAGNNNCTG 1 cut(s) 1016
PsuI RGATCY 1 cut(s) 868
PsyI GACNNNGTC 1 cut(s) 542
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 2 cut(s) 308, 748
RsaNI GTAC 2 cut(s) 307, 747
SaqAI TTAA 3 cut(s) 21, 270, 522
SatI GCNGC 2 cut(s) 438, 708
Sau3AI GATC 8 cut(s) 10, 49, 809, 868, 874, 936, 991, 1018
Sau96I GGNCC 2 cut(s) 480, 506
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 254, 944
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 2 cut(s) 631, 1022
SfcI CTRYAG 4 cut(s) 153, 333, 564, 705
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 5 cut(s) 291, 533, 594, 738, 764
SsiI CCGC 2 cut(s) 103, 1028
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 252, 942
TaaI ACNGT 4 cut(s) 186, 334, 604, 751
TaqI TCGA 2 cut(s) 715, 835
TasI AATT 5 cut(s) 291, 533, 594, 738, 764
TatI WGTACW 2 cut(s) 306, 746
TfiI GAWTC 4 cut(s) 262, 299, 424, 570
Tru1I TTAA 3 cut(s) 21, 270, 522
Tru9I TTAA 3 cut(s) 21, 270, 522
TscAI CASTG 3 cut(s) 337, 799, 898
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 437, 707
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 147, 210
TspRI CASTG 3 cut(s) 337, 799, 898
Tth111I GACNNNGTC 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 2 cut(s) 364, 500
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.