FvH4_3g00710

yippee-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013629
Physical Location & Seq
Reverse (-)
341656 .. 343510
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00710.t3

Sequence Viewer

Length: 330 bp
ATGGGAAGGCTATTCATAGAAACACTGAGCGGCATAAAGATCTTCAAATGCAGATGTTGCAAGGTGGACACTGCCTCCCACAGCGAAATCGTTTCCAAGGACTTTCAGGGCCGTTACGGCAGAGCTTATCTCTTCAGAAACGTGGTGAATATATGTCTTGGGCCTATTGAAGAGCGGAATTTGATTAGTGGATTGCATATTGTGAATGATATTTACTGCAGTTCTTGCCAACAAATTCTGGGTTGGAAATATGCTTATGAACCAGGCGAGAAGTATAAAGAAGGAATGTACATCCTAGAGAAGGAACGACTGATGAAGGAAGGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

110

Amino Acids

12.68

Weight (kDa)

8.53

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 87 1.9e-07 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica MD10G1335700.v1.1
prunus_persica Prupe.4G008100_v2.0.a1
pyrus_communis pycom10g28530
rosa_chinensis RchiOBHm_Chr5g0000961
rosa_laevigata RLG00000030909
rosa_multiflora Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii Rroxscaffold_1G00075310
rosa_rugosa Rorug04G0388000 Rorug04G0388000
rosa_samantha Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana Rw5G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 30, 175
AciI CCGC 2 cut(s) 30, 175
AcsI RAATTY 2 cut(s) 178, 234
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 2 cut(s) 46, 170
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
AoxI GGCC 2 cut(s) 109, 161
ApoI RAATTY 2 cut(s) 178, 234
AspS9I GGNCC 2 cut(s) 109, 161
AsuHPI GGTGA 1 cut(s) 157
BceAI ACGGC 2 cut(s) 96, 133
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 117
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 109, 161
BmrFI CCNGG 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 17
BshFI GGCC 2 cut(s) 111, 163
BslI CCNNNNNNNGG 1 cut(s) 301
BsnI GGCC 2 cut(s) 111, 163
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 2 cut(s) 30, 175
BspANI GGCC 2 cut(s) 111, 163
BspCNI CTCAG 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 2 cut(s) 30, 175
BsrGI TGTACA 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 137, 165
BstAPI GCANNNNNTGC 2 cut(s) 57, 225
BstAUI TGTACA 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 57, 117, 225
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 2 cut(s) 111, 163
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 23, 69
Cfr13I GGNCC 2 cut(s) 109, 161
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 4 cut(s) 10, 111, 125, 163
CviKI_1 RGCY 4 cut(s) 10, 111, 125, 163
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 137, 165
EarI CTCTTC 2 cut(s) 137, 165
Eco130I CCWWGG 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaiI YATR 8 cut(s) 17, 35, 152, 154, 198, 252, 258, 276
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 111, 163
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 275, 295, 310, 314
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 51, 60, 196, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 117, 225
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 141
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 92, 224, 249, 276
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 41
MbiI CCGCTC 2 cut(s) 30, 175
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 34, 124, 182
MflI RGATCY 1 cut(s) 39
MluCI AATT 2 cut(s) 178, 234
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 57, 117, 225
NdeII GATC 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 2 cut(s) 109, 161
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 2 cut(s) 109, 161
ScrFI CCNGG 1 cut(s) 264
SetI ASST 3 cut(s) 66, 127, 144
SfcI CTRYAG 1 cut(s) 217
Sse9I AATT 2 cut(s) 178, 234
SsiI CCGC 2 cut(s) 30, 175
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 144
TasI AATT 2 cut(s) 178, 234
TatI WGTACW 1 cut(s) 288
TauI GCSGC 1 cut(s) 33
TscAI CASTG 2 cut(s) 30, 76
TspDTI ATGAA 3 cut(s) 4, 273, 329
TspRI CASTG 2 cut(s) 30, 76
XagI CCTNNNNNAGG 1 cut(s) 299
XapI RAATTY 2 cut(s) 178, 234
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.