MD10G1335700.v1.1

yippee-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013629
Physical Location & Seq
Forward (+)
41254578 .. 41256519
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1335700.v1.1.491

Sequence Viewer

Length: 336 bp
ATGGGGCGGCTGTTCATAGAGACGCTGAGTGGGCCCAGGATCTTCAAGTGCAGGTGTTGCAAGGTGGACTTCGCGTCCCATGACGACATCGTTTCCAAGGATTTTCAGGGCCGCCATGGCAGAGCCTATCTCTTCAGAAATGTGGTAAATATATCTCTTGGGCCTATTGAAGAGCGGCAACTCACGAGCGGATTGCATACGGTGAATGACATACATTGTAGCTCTTGCCTACAAATTCTGGGTTGGAAATATGAGAAGGCTTATGAACCTAGTGAAAAGTATAAAGAAGGAATGTTCATCCTAGAGAAGGAACGAATGTTGAAGGAGGGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

112

Amino Acids

12.93

Weight (kDa)

8.29

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 106 1.3e-12 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica MD10G1335700.v1.1
prunus_persica Prupe.4G008100_v2.0.a1
pyrus_communis pycom10g28530
rosa_chinensis RchiOBHm_Chr5g0000961
rosa_laevigata RLG00000030909
rosa_multiflora Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii Rroxscaffold_1G00075310
rosa_rugosa Rorug04G0388000 Rorug04G0388000
rosa_samantha Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana Rw5G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 42
AccBSI CCGCTC 2 cut(s) 175, 189
AccII CGCG 1 cut(s) 74
AciI CCGC 4 cut(s) 7, 112, 175, 189
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 3 cut(s) 46, 170, 322
AhdI GACNNNNNGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 47
AoxI GGCC 3 cut(s) 32, 109, 161
ApaI GGGCCC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 4 cut(s) 32, 33, 109, 161
AsuHPI GGTGA 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 36
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 175, 209
BciT130I CCWGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 2 cut(s) 270, 302
BfuAI ACCTGC 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 3 cut(s) 8, 112, 176
BlsI GCNGC 3 cut(s) 9, 113, 177
Bme1390I CCNGG 1 cut(s) 37
BmeRI GACNNNNNGTC 1 cut(s) 73
BmgT120I GGNCC 4 cut(s) 32, 33, 109, 161
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BsaJI CCNNGG 3 cut(s) 35, 96, 115
BsaXI ACNNNNNCTCC 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 3 cut(s) 35, 96, 115
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 3 cut(s) 34, 111, 163
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 3 cut(s) 34, 111, 163
Bsp120I GGGCCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 39
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 4 cut(s) 7, 112, 175, 189
BspANI GGCC 3 cut(s) 34, 111, 163
BspCNI CTCAG 1 cut(s) 18
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 47
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 2 cut(s) 175, 189
BssECI CCNNGG 3 cut(s) 35, 96, 115
BssMI GATC 1 cut(s) 39
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 2 cut(s) 96, 115
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 137, 165
BstAPI GCANNNNNTGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 31, 57, 117
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 34, 111, 163
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 297
BveI ACCTGC 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 32, 33, 109, 161
CseI GACGC 2 cut(s) 31, 63
CviAII CATG 2 cut(s) 80, 116
CviJI RGCY 8 cut(s) 10, 34, 111, 125, 163, 222, 260, 330
CviKI_1 RGCY 8 cut(s) 10, 34, 111, 125, 163, 222, 260, 330
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DriI GACNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 137, 165
Eam1105I GACNNNNNGTC 1 cut(s) 73
EarI CTCTTC 2 cut(s) 137, 165
Eco130I CCWWGG 2 cut(s) 96, 115
Eco24I GRGCYC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 96, 115
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 2 cut(s) 96, 115
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 2 cut(s) 83, 119
FaiI YATR 9 cut(s) 17, 81, 117, 152, 198, 212, 252, 264, 282
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 61
FatI CATG 2 cut(s) 79, 115
Fnu4HI GCNGC 3 cut(s) 8, 112, 176
FokI GGATG 1 cut(s) 284
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 8, 112, 176
FspBI CTAG 2 cut(s) 270, 302
GluI GCNGC 3 cut(s) 8, 112, 176
HaeIII GGCC 3 cut(s) 34, 111, 163
HgaI GACGC 2 cut(s) 31, 63
Hin1II CATG 2 cut(s) 83, 119
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 250, 281, 301, 316
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 51, 60, 196
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 57, 117
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 2 cut(s) 83, 119
Kzo9I GATC 1 cut(s) 39
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 6 cut(s) 22, 37, 49, 92, 224, 316
MaeI CTAG 2 cut(s) 270, 302
MalI GATC 1 cut(s) 41
MbiI CCGCTC 2 cut(s) 175, 189
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 34, 124, 182
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 31, 57, 117
NcoI CCATGG 1 cut(s) 115
NdeII GATC 1 cut(s) 39
NlaIII CATG 2 cut(s) 83, 119
NlaIV GGNNCC 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 165
PkrI GCNGC 3 cut(s) 9, 113, 177
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 34
PspOMI GGGCCC 1 cut(s) 32
PspPI GGNCC 4 cut(s) 32, 33, 109, 161
PsuI RGATCY 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 3 cut(s) 8, 112, 176
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 4 cut(s) 32, 33, 109, 161
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 56, 66, 224, 271
Sse9I AATT 1 cut(s) 234
SsiI CCGC 4 cut(s) 7, 112, 175, 189
SspMI CTAG 2 cut(s) 270, 302
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 2 cut(s) 96, 115
TaaI ACNGT 1 cut(s) 202
TasI AATT 1 cut(s) 234
TauI GCSGC 3 cut(s) 10, 114, 178
TspDTI ATGAA 3 cut(s) 4, 279, 286
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 234
XspI CTAG 2 cut(s) 270, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.