Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019885.1

Orthogroup ID

OG0013629

Physical Location & Seq

Genomic Coordinates Reverse (-)

10312 .. 10683

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019885.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgaaggcgctcatctcaacccactgcctctccaagaccacacctttatctctcttttcttcagcctctaaatccattcgatcctacccaccaacccaattcagaaccccaaatcttgtccgcctaaaacccaatacttttgtgccctatgcctctctttcctccgaaatagctcccagcggagctgttgaaatggatgcggcttctcgccggcaacgttccggtgagattcacgtcatcgttggcccaatgtttgccggaaagaccaccacgcttcttcgcagaattcaatccgagaaaggcgatggcaggtttgaccctcctcctgaaatttcatgtgggctttcgttttggtgttactgttgttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PPR PPR_2 TK

Protein Analysis

123

Amino Acids

13.55

Weight (kDa)

9.46

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013629)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica	MD10G1335700.v1.1
prunus_persica	Prupe.4G008100_v2.0.a1
pyrus_communis	pycom10g28530
rosa_chinensis	RchiOBHm_Chr5g0000961
rosa_laevigata	RLG00000030909
rosa_multiflora	Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii	Rroxscaffold_1G00075310
rosa_rugosa	Rorug04G0388000 Rorug04G0388000
rosa_samantha	Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana	Rw5G000790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	300
AciI	CCGC	3 cut(s)	121, 180, 200
AclI	AACGTT	1 cut(s)	217
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	285, 330
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	191, 290
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	2 cut(s)	173, 185
AluI	AGCT	2 cut(s)	173, 185
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	285, 330
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	147
BccI	CCATC	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	245
BmsI	GCATC	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bse118I	RCCGGY	1 cut(s)	210
BseGI	GGATG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	246
BsiSI	CCGG	3 cut(s)	211, 222, 258
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	3 cut(s)	121, 180, 200
BspANI	GGCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	210
BssMI	GATC	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstSLI	GKGCMC	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	318
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	6 cut(s)	65, 173, 185, 203, 246, 343
CviKI_1	RGCY	6 cut(s)	65, 173, 185, 203, 246, 343
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	285
FaeI	CATG	1 cut(s)	339
FaiI	YATR	2 cut(s)	150, 337
FatI	CATG	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	201
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	3 cut(s)	211, 222, 258
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	211, 222, 258
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	104, 166, 295
Hpy188III	TCNNGA	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	2 cut(s)	217, 234
HpySE526I	ACGT	2 cut(s)	217, 234
Hsp92II	CATG	1 cut(s)	339
HspAI	GCGC	1 cut(s)	8
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	178, 182
LpnPI	CCDG	6 cut(s)	190, 224, 235, 271, 295, 339
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	2 cut(s)	217, 234
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	2 cut(s)	51, 269
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	3 cut(s)	98, 285, 330
MnlI	CCTC	6 cut(s)	38, 76, 163, 172, 330, 333
MroNI	GCCGGC	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	3 cut(s)	211, 222, 258
NaeI	GCCGGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	80
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	46, 175, 187, 220, 237, 314
SfaNI	GCATC	1 cut(s)	187
Sse9I	AATT	3 cut(s)	98, 285, 330
SsiI	CCGC	3 cut(s)	121, 180, 200
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	2 cut(s)	220, 237
TaqI	TCGA	1 cut(s)	79
TasI	AATT	3 cut(s)	98, 285, 330
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	229
TscAI	CASTG	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	17, 324
TspRI	CASTG	1 cut(s)	29
XapI	RAATTY	2 cut(s)	285, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.