RLG00000030909

yippee-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013629
Physical Location & Seq
Reverse (-)
552973 .. 555767
2795 bp
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UTR
Exon/CDS
Intron
RLM00000030909

Sequence Viewer

Length: 636 bp
ATGGGAAGGCTATTCATAGAAACGCTGAGCGGCCCAAAGATCTTCAAATGCAGATGTTGCAAGGTGGACACTGCCTCCCACAGCGAGATCGTTTCCAAGGATTTTCAGGGCCGTCACGGCAGAGCTTATCTCTTCAGAAATGTGGTGAATATATCTCTTGGGCCTATTGAAGAGCGGCATTTGACTAGTGGATTGCATATTGTGAATGATATTTACTGCAGCTCTTGCCAACAAATTCTGGGTTGGAAATATGAGAAGGCTTATGAACCAAGCCAAAAGTATAAAGAAGGAATGTACATCCTGGAGAAGGAGCGACTGATGAAGGAGGCGTCTAAATCCATTCGATCCTACCCACCAACCCAATTCAGAACCCCAAATCTTCTCCGCCTAAAACCCAATACTTTTGTGCCCTATTCCTCTCTTTCTTCCGAAATAGCTCCCAACGGAGCTGTTGAAATGGATGCGGCTTCTCGCCGGCAACGTTCCGGTGAGATTCATGTGATCGTTGGCCCAATGTTTGCCGGAAAGACCACCACGCTTCTTCGCAGAATTCAATCCGAGAAAGGCGATGGCAGGTTTGACCCTCCACCTGAAATTTCATGTGGGTTTTCGTTTTGGTGTTGCTATGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

212

Amino Acids

24.05

Weight (kDa)

9.18

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 109 5.1e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica MD10G1335700.v1.1
prunus_persica Prupe.4G008100_v2.0.a1
pyrus_communis pycom10g28530
rosa_chinensis RchiOBHm_Chr5g0000961
rosa_laevigata RLG00000030909
rosa_multiflora Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii Rroxscaffold_1G00075310
rosa_rugosa Rorug04G0388000 Rorug04G0388000
rosa_samantha Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana Rw5G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 564
AccBSI CCGCTC 2 cut(s) 30, 175
AciI CCGC 4 cut(s) 30, 175, 385, 464
AclI AACGTT 1 cut(s) 481
AclWI GGATC 1 cut(s) 339
AcsI RAATTY 3 cut(s) 234, 549, 594
AcuI CTGAAG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 4 cut(s) 46, 170, 455, 554
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 4 cut(s) 125, 222, 437, 449
AluI AGCT 4 cut(s) 125, 222, 437, 449
AlwI GGATC 1 cut(s) 339
AoxI GGCC 4 cut(s) 31, 109, 161, 508
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 3 cut(s) 234, 549, 594
AspS9I GGNCC 4 cut(s) 32, 109, 161, 509
AsuHPI GGTGA 2 cut(s) 157, 500
BaeGI GKGCMC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 563
BceAI ACGGC 2 cut(s) 96, 133
BciT130I CCWGG 1 cut(s) 302
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 217
BfuAI ACCTGC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 117
BglII AGATCT 1 cut(s) 39
BisI GCNGC 4 cut(s) 31, 176, 220, 465
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 4 cut(s) 32, 177, 221, 466
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 4 cut(s) 32, 109, 161, 509
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpmI CTGGAG 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 474
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 297, 466
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 4 cut(s) 33, 111, 163, 510
BsiSI CCGG 3 cut(s) 475, 486, 522
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 4 cut(s) 33, 111, 163, 510
Bsp1286I GDGCHC 1 cut(s) 411
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 4 cut(s) 39, 87, 344, 501
Bsp1720I GCTNAGC 1 cut(s) 26
BspACI CCGC 4 cut(s) 30, 175, 385, 464
BspANI GGCC 4 cut(s) 33, 111, 163, 510
BspCNI CTCAG 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 1 cut(s) 339
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 2 cut(s) 30, 175
BsrFI RCCGGY 1 cut(s) 474
BsrGI TGTACA 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 39, 87, 344, 501
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 137, 165
BstACI GRCGYC 1 cut(s) 329
BstAPI GCANNNNNTGC 2 cut(s) 57, 225
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 297, 466
BstKTI GATC 4 cut(s) 42, 90, 347, 504
BstMBI GATC 4 cut(s) 39, 87, 344, 501
BstMWI GCNNNNNNNGC 3 cut(s) 57, 117, 225
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 217
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 4 cut(s) 33, 111, 163, 510
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 2 cut(s) 297, 466
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 1 cut(s) 476
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 4 cut(s) 32, 109, 161, 509
CseI GACGC 1 cut(s) 318
Csp6I GTAC 1 cut(s) 295
CviAII CATG 2 cut(s) 497, 600
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 26
DpnI GATC 4 cut(s) 41, 89, 346, 503
DpnII GATC 4 cut(s) 39, 87, 344, 501
Eam1104I CTCTTC 2 cut(s) 137, 165
EarI CTCTTC 2 cut(s) 137, 165
EciI GGCGGA 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 500, 603
FaiI YATR 9 cut(s) 17, 152, 198, 252, 264, 282, 498, 601, 627
FatI CATG 2 cut(s) 496, 599
Fnu4HI GCNGC 4 cut(s) 31, 176, 220, 465
FokI GGATG 2 cut(s) 284, 473
Fsp4HI GCNGC 4 cut(s) 31, 176, 220, 465
FspBI CTAG 1 cut(s) 186
GluI GCNGC 4 cut(s) 31, 176, 220, 465
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 4 cut(s) 33, 111, 163, 510
HapII CCGG 3 cut(s) 475, 486, 522
HgaI GACGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 2 cut(s) 500, 603
HinfI GANTC 1 cut(s) 493
HpaII CCGG 3 cut(s) 475, 486, 522
HphI GGTGA 2 cut(s) 157, 500
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 4 cut(s) 137, 368, 430, 559
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 250, 281, 301, 316
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 4 cut(s) 51, 60, 196, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 117, 225
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 481
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 2 cut(s) 500, 603
KroI GCCGGC 1 cut(s) 474
KroNI GCCGGC 1 cut(s) 476
Kzo9I GATC 4 cut(s) 39, 87, 344, 501
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 3 cut(s) 310, 442, 446
LpnPI CCDG 9 cut(s) 92, 224, 287, 314, 488, 499, 535, 559, 603
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 113
MalI GATC 4 cut(s) 41, 89, 346, 503
MbiI CCGCTC 2 cut(s) 30, 175
MboI GATC 4 cut(s) 39, 87, 344, 501
MboII GAAGA 6 cut(s) 34, 124, 182, 371, 417, 533
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 4 cut(s) 234, 362, 549, 594
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 85, 319, 427, 594
MroNI GCCGGC 1 cut(s) 474
MspI CCGG 3 cut(s) 475, 486, 522
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 57, 117, 225
NaeI GCCGGC 1 cut(s) 476
NdeII GATC 4 cut(s) 39, 87, 344, 501
NgoMIV GCCGGC 1 cut(s) 474
NlaIII CATG 2 cut(s) 500, 603
NmuCI GTSAC 1 cut(s) 113
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PdiI GCCGGC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 493
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 4 cut(s) 32, 177, 221, 466
Psp1406I AACGTT 1 cut(s) 481
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 4 cut(s) 32, 109, 161, 509
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 4 cut(s) 31, 176, 220, 465
Sau3AI GATC 4 cut(s) 39, 87, 344, 501
Sau96I GGNCC 4 cut(s) 32, 109, 161, 509
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 411
SetI ASST 8 cut(s) 66, 127, 224, 439, 451, 484, 578, 592
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 4 cut(s) 234, 362, 549, 594
SsiI CCGC 4 cut(s) 30, 175, 385, 464
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 96
TaiI ACGT 1 cut(s) 484
TaqI TCGA 1 cut(s) 343
TasI AATT 4 cut(s) 234, 362, 549, 594
TatI WGTACW 1 cut(s) 294
TauI GCSGC 3 cut(s) 33, 178, 467
TfiI GAWTC 1 cut(s) 493
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 5 cut(s) 4, 279, 335, 485, 588
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 3 cut(s) 234, 549, 594
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.