Rh5AG007600

yippee-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013629
Physical Location & Seq
Reverse (-)
525288 .. 527431
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG007600.1

Sequence Viewer

Length: 315 bp
ATGGGAAGGCTATTCATAGAAACGCTGAGTGGCCCAAAGATCTTCAAATGCAGATGTTGCAAGGTGGACACTGCCTCCCACAGCGAGATCGTTTCCAAGGATTTTCAGGGCCGTCACGGCAGAGCTTATCTCTTCAGGAATGTGGTGAATATATCTCTTGGGCCTATTGAAGAGCGGCATTTGACTAGTGGATTGCATATTGTGAATGATATTTACTGCAGCTCTTGCCAACAAATTCTGGGTTGGAAATATGTAAGTTCTAAACTGTTGTTGATCTTTTGTTTAGTGTCATGCATGATCTATATCATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

104

Amino Acids

11.86

Weight (kDa)

8.93

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 88 1.7e-07 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica MD10G1335700.v1.1
prunus_persica Prupe.4G008100_v2.0.a1
pyrus_communis pycom10g28530
rosa_chinensis RchiOBHm_Chr5g0000961
rosa_laevigata RLG00000030909
rosa_multiflora Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii Rroxscaffold_1G00075310
rosa_rugosa Rorug04G0388000 Rorug04G0388000
rosa_samantha Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana Rw5G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AciI CCGC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 46, 170
AhlI ACTAGT 1 cut(s) 185
AluBI AGCT 2 cut(s) 125, 222
AluI AGCT 2 cut(s) 125, 222
AoxI GGCC 3 cut(s) 31, 109, 161
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 32, 109, 161
AsuHPI GGTGA 1 cut(s) 157
BbvI GCAGC 1 cut(s) 231
BceAI ACGGC 2 cut(s) 96, 133
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 117
BglII AGATCT 1 cut(s) 39
BisI GCNGC 2 cut(s) 176, 220
BlsI GCNGC 2 cut(s) 177, 221
BmgT120I GGNCC 3 cut(s) 32, 109, 161
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BsaBI GATNNNNATC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse8I GATNNNNATC 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 302
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 33, 111, 163
BsnI GGCC 3 cut(s) 33, 111, 163
Bsp143I GATC 4 cut(s) 39, 87, 273, 297
BspACI CCGC 1 cut(s) 175
BspANI GGCC 3 cut(s) 33, 111, 163
BspCNI CTCAG 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 175
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 4 cut(s) 39, 87, 273, 297
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 137, 165
BstAPI GCANNNNNTGC 2 cut(s) 57, 225
BstDEI CTNAG 1 cut(s) 26
BstKTI GATC 4 cut(s) 42, 90, 276, 300
BstMBI GATC 4 cut(s) 39, 87, 273, 297
BstMWI GCNNNNNNNGC 3 cut(s) 57, 117, 225
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 33, 111, 163
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 32, 109, 161
CviAII CATG 2 cut(s) 291, 295
CviJI RGCY 6 cut(s) 10, 33, 111, 125, 163, 222
CviKI_1 RGCY 6 cut(s) 10, 33, 111, 125, 163, 222
DdeI CTNAG 1 cut(s) 26
DpnI GATC 4 cut(s) 41, 89, 275, 299
DpnII GATC 4 cut(s) 39, 87, 273, 297
Eam1104I CTCTTC 2 cut(s) 137, 165
EarI CTCTTC 2 cut(s) 137, 165
Eco130I CCWWGG 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 294, 298
FaiI YATR 7 cut(s) 17, 152, 198, 252, 292, 296, 303
FatI CATG 2 cut(s) 290, 294
Fnu4HI GCNGC 2 cut(s) 176, 220
Fsp4HI GCNGC 2 cut(s) 176, 220
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 176, 220
HaeIII GGCC 3 cut(s) 33, 111, 163
Hin1II CATG 2 cut(s) 294, 298
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4V TGCA 5 cut(s) 51, 60, 196, 219, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 117, 225
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 2 cut(s) 294, 298
Kzo9I GATC 4 cut(s) 39, 87, 273, 297
LguI GCTCTTC 1 cut(s) 165
LpnPI CCDG 3 cut(s) 92, 121, 224
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 113
MalI GATC 4 cut(s) 41, 89, 275, 299
MbiI CCGCTC 1 cut(s) 175
MboI GATC 4 cut(s) 39, 87, 273, 297
MboII GAAGA 3 cut(s) 34, 124, 182
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 57, 117, 225
NdeII GATC 4 cut(s) 39, 87, 273, 297
NlaIII CATG 2 cut(s) 294, 298
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 165
PkrI GCNGC 2 cut(s) 177, 221
PspPI GGNCC 3 cut(s) 32, 109, 161
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 176, 220
Sau3AI GATC 4 cut(s) 39, 87, 273, 297
Sau96I GGNCC 3 cut(s) 32, 109, 161
SetI ASST 3 cut(s) 66, 127, 224
SfcI CTRYAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 267
TasI AATT 1 cut(s) 234
TauI GCSGC 1 cut(s) 178
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 113
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 4
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 234
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.