Rh5DG008300

yippee-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013629
Physical Location & Seq
Reverse (-)
528829 .. 530149
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG008300.1

Sequence Viewer

Length: 336 bp
ATGGGAAGGCTATTCATAGAAACGCTGAGTGGCCCAAAGATCTTCAAATGCAGATGTTGCAAGGTGGACACTGCCTCCCACAGCGAGATCGTTTCCAAGGATTTTCAGGGCCGTTACGGCAGAGCTTATCTCTTCAGGAATGTGGTGAATATATCTCTTGGGCCTATTGAAGAGCGGCATTTGACTAGTGGACTGCATATTGTGAATGATATTTACTGCAGCTCTTGCCAACAAATTCTGGGTTGGAAATATGAGAAGGCTTATGAACCAAGCCAAAAGTATAAAGAAGGAATGTACATCCTGGAGAAGGAGCGACTGATGAAGGAGGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

111

Amino Acids

12.95

Weight (kDa)

8.81

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 107 1.3e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica MD10G1335700.v1.1
prunus_persica Prupe.4G008100_v2.0.a1
pyrus_communis pycom10g28530
rosa_chinensis RchiOBHm_Chr5g0000961
rosa_laevigata RLG00000030909
rosa_multiflora Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii Rroxscaffold_1G00075310
rosa_rugosa Rorug04G0388000 Rorug04G0388000
rosa_samantha Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana Rw5G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 175
AciI CCGC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 46, 170
AhlI ACTAGT 1 cut(s) 185
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 125, 222
AluI AGCT 2 cut(s) 125, 222
AoxI GGCC 3 cut(s) 31, 109, 161
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 32, 109, 161
AsuHPI GGTGA 1 cut(s) 157
BbvI GCAGC 1 cut(s) 231
BceAI ACGGC 2 cut(s) 96, 133
BciT130I CCWGG 1 cut(s) 302
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 117
BglII AGATCT 1 cut(s) 39
BisI GCNGC 2 cut(s) 176, 220
BlsI GCNGC 2 cut(s) 177, 221
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 3 cut(s) 32, 109, 161
BmrFI CCNGG 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpmI CTGGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 3 cut(s) 59, 89, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 33, 111, 163
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 3 cut(s) 33, 111, 163
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 39, 87
BspACI CCGC 1 cut(s) 175
BspANI GGCC 3 cut(s) 33, 111, 163
BspCNI CTCAG 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 39, 87
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 302
Bst6I CTCTTC 2 cut(s) 137, 165
BstAPI GCANNNNNTGC 2 cut(s) 57, 225
BstAUI TGTACA 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 297
BstKTI GATC 2 cut(s) 42, 90
BstMBI GATC 2 cut(s) 39, 87
BstMWI GCNNNNNNNGC 3 cut(s) 57, 117, 225
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 33, 111, 163
BtsCI GGATG 1 cut(s) 297
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 32, 109, 161
Csp6I GTAC 1 cut(s) 295
CviJI RGCY 8 cut(s) 10, 33, 111, 125, 163, 222, 260, 273
CviKI_1 RGCY 8 cut(s) 10, 33, 111, 125, 163, 222, 260, 273
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 41, 89
DpnII GATC 2 cut(s) 39, 87
Eam1104I CTCTTC 2 cut(s) 137, 165
EarI CTCTTC 2 cut(s) 137, 165
Eco130I CCWWGG 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaiI YATR 6 cut(s) 17, 152, 198, 252, 264, 282
Fnu4HI GCNGC 2 cut(s) 176, 220
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 176, 220
FspBI CTAG 1 cut(s) 186
GluI GCNGC 2 cut(s) 176, 220
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 3 cut(s) 33, 111, 163
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 67, 191
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 67, 191
HpyAV CCTTC 4 cut(s) 250, 281, 301, 316
HpyCH4V TGCA 4 cut(s) 51, 60, 196, 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 117, 225
HpyF3I CTNAG 1 cut(s) 26
Kzo9I GATC 2 cut(s) 39, 87
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 92, 121, 224, 287, 314
Lsp1109I GCAGC 1 cut(s) 231
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 41, 89
MbiI CCGCTC 1 cut(s) 175
MboI GATC 2 cut(s) 39, 87
MboII GAAGA 3 cut(s) 34, 124, 182
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 2 cut(s) 85, 319
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 57, 117, 225
NdeII GATC 2 cut(s) 39, 87
PciSI GCTCTTC 1 cut(s) 165
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 2 cut(s) 177, 221
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 3 cut(s) 32, 109, 161
PstI CTGCAG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 176, 220
Sau3AI GATC 2 cut(s) 39, 87
Sau96I GGNCC 3 cut(s) 32, 109, 161
ScrFI CCNGG 1 cut(s) 302
SetI ASST 3 cut(s) 66, 127, 224
SfcI CTRYAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 1 cut(s) 234
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 96
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 178
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 219
TspDTI ATGAA 3 cut(s) 4, 279, 335
TspRI CASTG 1 cut(s) 76
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 234
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.