Prupe.4G008100_v2.0.a1

yippee-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013629
Physical Location & Seq
Reverse (-)
415233 .. 416611
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G008100.1

Sequence Viewer

Length: 336 bp
ATGGGGCGGCTGTTTATAGAGACGCTGAGTGGGCCAAGGATCTTCAAGTGCAGGTATTGCAAGGTGGACTCTGCTTCCCGCGACGACGTCGTTTCCAAGGAGTTTCAGGGCCGTTATGGCAGAGCCTATCTCTTCAGGAATGTGGTAAATATATCTCTTGGGCCTATTGAAGAGAGGCAACTCATTAGCGGATTGCATACAGTGAACGACGTATATTGTAGCTCTTGCCAGCAAATTCTGGGCTGGAAATATGACAAGGCTTATGAGCCAAGCCAAAAGTATAAAGAAGGAATGTACATCCTGGAGAGGGAACGGATGCTGAAGGAGGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

112

Amino Acids

13.04

Weight (kDa)

8.91

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g00710 FvH4_3g00710 FvH4_3g00710
malus_domestica MD10G1335700.v1.1
prunus_persica Prupe.4G008100_v2.0.a1
pyrus_communis pycom10g28530
rosa_chinensis RchiOBHm_Chr5g0000961
rosa_laevigata RLG00000030909
rosa_multiflora Rmu_sc0019885.1_g000005 Rmu_sc0025943.1_g000001
rosa_roxburghii Rroxscaffold_1G00075310
rosa_rugosa Rorug04G0388000 Rorug04G0388000
rosa_samantha Rh5AG007600 Rh5BG009700 Rh5CG008300 Rh5DG008300
rosa_wichuraiana Rw5G000790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 42
AccII CGCG 1 cut(s) 81
AciI CCGC 3 cut(s) 7, 79, 189
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 46, 170
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 47
AoxI GGCC 3 cut(s) 32, 109, 161
ApoI RAATTY 1 cut(s) 234
AspS9I GGNCC 3 cut(s) 32, 109, 161
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 42
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 3 cut(s) 32, 109, 161
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpmI CTGGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 35, 96
BsaXI ACNNNNNCTCC 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 2 cut(s) 35, 96
BseGI GGATG 2 cut(s) 297, 321
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 34, 111, 163
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 3 cut(s) 34, 111, 163
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 3 cut(s) 7, 79, 189
BspANI GGCC 3 cut(s) 34, 111, 163
BspCNI CTCAG 1 cut(s) 18
BspFNI CGCG 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 35, 96
BssMI GATC 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 35, 96
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 2 cut(s) 137, 165
BstACI GRCGYC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 297, 321
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 3 cut(s) 31, 57, 117
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 3 cut(s) 34, 111, 163
BtsCI GGATG 2 cut(s) 297, 321
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 230
Cfr13I GGNCC 3 cut(s) 32, 109, 161
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 295
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 137, 165
EarI CTCTTC 2 cut(s) 137, 165
Eco130I CCWWGG 2 cut(s) 35, 96
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 35, 96
ErhI CCWWGG 2 cut(s) 35, 96
Esp3I CGTCTC 1 cut(s) 14
FaiI YATR 8 cut(s) 17, 117, 152, 198, 214, 252, 264, 282
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 2 cut(s) 284, 328
Fsp4HI GCNGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 3 cut(s) 34, 111, 163
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 87
HinfI GANTC 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 67, 205
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 67, 205
Hpy99I CGWCG 4 cut(s) 86, 89, 92, 212
HpyAV CCTTC 2 cut(s) 281, 316
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 87, 210
HpyCH4V TGCA 3 cut(s) 51, 60, 196
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 57, 117
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 2 cut(s) 87, 210
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 8 cut(s) 37, 92, 121, 224, 229, 242, 287, 314
LweI GCATC 1 cut(s) 306
MaeII ACGT 2 cut(s) 87, 210
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 34, 124, 182
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 168, 300, 319
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 3 cut(s) 31, 57, 117
NdeII GATC 1 cut(s) 39
PflFI GACNNNGTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 3 cut(s) 32, 109, 161
PsuI RGATCY 1 cut(s) 39
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 3 cut(s) 32, 109, 161
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 302
SetI ASST 5 cut(s) 56, 66, 90, 213, 224
SfaNI GCATC 1 cut(s) 306
Sse9I AATT 1 cut(s) 234
SsiI CCGC 3 cut(s) 7, 79, 189
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 2 cut(s) 35, 96
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 90, 213
TasI AATT 1 cut(s) 234
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 10
TscAI CASTG 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 207
Tth111I GACNNNGTC 1 cut(s) 86
XapI RAATTY 1 cut(s) 234
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.