Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014382

Physical Location & Seq

Genomic Coordinates Forward (+)

802010 .. 809315

Gene Structure 7306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01570.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGAGCTCTACTCATACCCAACTGGGTCTCCAACTCCAACCTCAACTAACCTTCACCTCACTCCTACTCCCCTCACACCCACTCATCACCTTCTACCCAAGACTCCACAACCGCACCTTTAAACGCTGCGTTTCCATCACAGCCTCATCGGCCAATGAACCCAACGACGTCGTTGAGCACAAGCCGAAGCAGAAGAGGGCCTATCCGTTTCACGAAATAGAGCCCAAATGGCAGCGGTATTGGGAGAAAGACAAGACTTTTCGAACCCCGGATGAGGTTGATATGTCAAAGCCCAAATTCTACGTCCTCGACATGTTCCCTTATCCCAGTGGAGCGGGGTTACATGTCGGCCATCCGCTTGGATATACTGCGACAGACATTCTCGCTAGGCTTAAACGTATGCAGGGGTACAATGTGTTACACCCGATGGGATGGGATGCATTTGGATTGCCAGCGGAGCAGTATGCAATCGAGACAGGAACCCACCCAAAGATCACAACCTTGAAGAACATTGATCGCTTTCGTTCCCAGCTTAAATCATTAGGGTTTTCATATGACTGGGATCGTGAAATTTCCACAACAGAACCAGATTATTATAAATGGACCCAATGGATCTTTCTTCAGCTATTAAAGAGAGGCTTGGCATATCAGGCTGAAGTGCCAGTCAATTGGTGCCCTGCTCTTGGTACTGTCTTGGCAAATGAAGAAGTGATAGATGGTCTGAGTGAGCGTGGGGGTCATCCAGTAATAAGAAAGCCAATGAAGCAATGGATGCTCAAGATTACAGCATATGCGGATCGCCTTCTTGAAGATTTAGATGACCTTGACTGGCCTGAGAGTATAAAAGAGATGCAAAGAAACTGGATAGGGAAGTCAGAAGGTGCTGAGATGGAATTTTCTGTTCTTAGCAGTGATGGACAAGAGAGAGACATAAAGATTACAATCTACACTACCAGACCGGACACCATCTTTGGAGCAACATATTTAGTTATCGCACCGGAGCATCCATTGTTGTCATCATTAGTATCAACAACCCAGAGAGAAAGTGTGGAGGAGTATATAGATGTTGCCTCAAGAAAGAGTGACCTCGAGAGGACTGAGCTTCAGAAAGAAAAGACCGGGGTATTCAGTGGGTGCTATGCTAAAAATCCAGTTAATGGAGAAGCTATTCCTATCTGGGTTGCGGACTATGTCCTGGGCAGTTATGGAACGGGAGCTATAATGGCTGTACCTGCACATGACACTCGTGACTTTGAATTTGCTTCAAAATATGATATCCCAATCCGTTGGGTTGTGATGCCGCACGATAAGAAGCTCAGTGGTTCGGGAAAGGCCTATTCAGGTGAAGGAAACGTTATAAATTCTTCAAACACAAAATTGGGGTTGGACATAAATAGCTTATCTAGCAAAGATGCTGCTTTCAAAGTCATTGAATGGGCTGAGAGGACTGGAAATGGGAAGAAGAAGGTGAACTATAAGTTGAGGGATTGGCTTTTCGCTAGGCAACGTTATTGGGGGGAACCTATTCCAGTAGTTTTTTCAGACGATAGTGATGAGGGTGTTCCCATTCTTGAAACCGAACTGCCCCTCACCCTTCCAGAATTGGATGATTTTTCTCCCACTGGAACAGGAGAACCACCCCTAGCAAAAGCAGTTTCTTGGGTTAAAACTAAGGACCCTTTGTCTGGAAAACCTGCCAGAAGAGAGACAAGCACCATGCCCCAGTGGGCCGGTTCTTGCTGGTACTATTTGAGATTTATGGACCCAAAAAACTCAAATGAATTGGTGGCCAAGACAAAAGAAACGTATTGGAGCCCAGTTGATGTGTATGTTGGTGGTGCTGAACATGCTGTTCTCCATTTACTTTATGCAAGATTCTGGCACAAGGTTCTCTATGACATTGGTGTCGTCTCCACCAAAGAACCCTTCAAGTGTGTCATAAATCAGGGCATTATTCTTGGAGAAGTTCAATATATCGCTTACAAAGACTCAGATGGGAACTTTGTCTCTGCAGACTCTGATACATCAGCTGAGCTTCAACAAGAAATAATTCCGGATGAAAAGGTCATTAAATCTGGGGATTCTTTTGTACTGAAAGACAATCCTGAGATCTCTGTTCTTGCACGTTCTCATAAAATGAGTAAGAGTAGGGGAAATGTTGTCAATCCTGATGATGTCGTTTCTGAGTACGGGGCAGATTCACTTCGCTTATATGAAATGTTCATGGGGCCATTGAGAGACTCAAAACAATGGAATACGAGTGGTATTGAAGGTGTTCATCGGTTTTTGGGAAGAGCCTGGAGGCTAGTTGTTGGTTCACCGTTATCTGATGGTACACTCAAAGAGGGAACAGTAGTGACTGATGAGGATCCTACTCCGGAGCAGCTCCGTTCTCTACATAAGTGCATTGCCAAGGTAACAGAGGAAATAGAAGCAACGAGATTTAATACTGGAATTTCTGCAATGATGGAGTTCATCAATGTGGCATATAAGTGGAAAAAACATCCGAGAGTGATTATTGAAGCATTTGTATTAATGCTCGCACCGTATGCACCTCATATGGCTGAAGAGCTTTGGTTTCGGTTGGGACACTCAAAATCATTGGCATATGAGCCTTTTCCTAAGGTCGATCCAGCTTACTTAGAGGAATCTACTATTTTGTTACCAGTTCAAATCAATGGCAAGACGAGGGGTACAATCCAGGTTGAAAAGACCTGTTCAGAGGAGGATGCTTTTCAACTGGCATCAAAAGATGAAAAGCTCTCCAAATATCTTGATGGGGTGTCAATCAAAAAGAGGATTTTCGTCCCTGGAAAAATTCTGAATGTCATCTTGGACCGTCAAAACATCAAGGCAGCTGTGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

956

Amino Acids

108.17

Weight (kDa)

6.12

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1	PF00133	13 - 189	7.1e-24	tRNA synthetases class I (I, L, M and V)
tRNA-synt_1g	PF09334	13 - 136	2.3e-16	tRNA synthetases class I (M)
tRNA-synt_1_2	PF13603	185 - 374	4.1e-63	Leucyl-tRNA synthetase, editing domain
tRNA-synt_1	PF00133	609 - 639	7.7e-07	tRNA synthetases class I (I, L, M and V)
Anticodon_1	PF08264	695 - 803	4.4e-18	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04350
fragaria_vesca	FvH4_3g01570 FvH4_3g01570
malus_domestica	MD10G1325600.v1.1
prunus_persica	Prupe.4G016400_v2.0.a1 Prupe.4G016400_v2.0.a1
pyrus_communis	pycom10g27530
rosa_chinensis	RchiOBHm_Chr5g0002381
rosa_laevigata	RLG00000031024
rosa_multiflora	Rmu_sc0006137.1_g000003 Rmu_sc0017945.1_g000003
rosa_roxburghii	Rroxscaffold_1G00073490
rosa_rugosa	Rorug04G0395800.1
rosa_samantha	Rh5AG018500 Rh5BG021200 Rh5DG019500
rosa_wichuraiana	Rw5G001740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 1358
AasI	GACNNNNNNGTC	1 cut(s)	1904
AatII	GACGTC	1 cut(s)	171
Acc36I	ACCTGC	2 cut(s)	1240, 1702
AccB1I	GGYRCC	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	1157
AccBSI	CCGCTC	1 cut(s)	335
AccIII	TCCGGA	2 cut(s)	2053, 2377
AciI	CCGC	8 cut(s)	112, 235, 335, 356, 455, 794, 1184, 1301
AclI	AACGTT	2 cut(s)	1353, 1507
AclWI	GGATC	6 cut(s)	570, 620, 804, 2363, 2376, 2624
AcoI	YGGCCR	3 cut(s)	150, 349, 1788
AcsI	RAATTY	7 cut(s)	296, 570, 893, 1256, 1360, 2454, 2817
AcuI	CTGAAG	4 cut(s)	605, 675, 1088, 2586
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	8 cut(s)	410, 688, 1230, 1745, 2091, 2189, 2335, 2695
AfiI	CCNNNNNNNGG	4 cut(s)	274, 683, 1157, 1685
AflIII	ACRYGT	2 cut(s)	312, 343
AhdI	GACNNNNNGTC	1 cut(s)	1681
AjnI	CCWGG	4 cut(s)	1194, 2297, 2700, 2809
AjuI	GAANNNNNNNTTGG	6 cut(s)	600, 632, 1910, 1942, 2816, 2848
Alw21I	GWGCWC	2 cut(s)	8, 180
Alw26I	GTCTC	7 cut(s)	32, 467, 921, 1700, 1915, 2011, 2232
AlwI	GGATC	6 cut(s)	570, 620, 804, 2363, 2376, 2624
AlwNI	CAGNNNCTG	1 cut(s)	2018
Ama87I	CYCGRG	1 cut(s)	1088
Aor13HI	TCCGGA	2 cut(s)	2053, 2377
AoxI	GGCC	8 cut(s)	150, 198, 349, 830, 1332, 1728, 1788, 2228
ApeKI	GCWGC	5 cut(s)	126, 232, 1415, 2383, 2855
ApoI	RAATTY	7 cut(s)	296, 570, 893, 1256, 1360, 2454, 2817
ArsI	GACNNNNNNTTYG	6 cut(s)	288, 320, 953, 985, 1241, 1273
AseI	ATTAAT	1 cut(s)	2534
Asp700I	GAANNNNTTC	4 cut(s)	1167, 1524, 2049, 2274
AspS9I	GGNCC	7 cut(s)	198, 603, 1675, 1728, 1762, 2228, 2836
AsuC2I	CCSGG	2 cut(s)	269, 1120
AsuHPI	GGTGA	6 cut(s)	46, 79, 1355, 1480, 1582, 2310
AsuII	TTCGAA	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	1088
AvaII	GGWCC	4 cut(s)	603, 1675, 1762, 2836
AxyI	CCTNAGG	1 cut(s)	2622
BaeGI	GKGCMC	1 cut(s)	677
BalI	TGGCCA	1 cut(s)	1790
BamHI	GGATCC	1 cut(s)	2368
BanI	GGYRCC	1 cut(s)	672
BanII	GRGCYC	3 cut(s)	8, 225, 1817
BauI	CACGAG	1 cut(s)	1245
Bbv12I	GWGCWC	2 cut(s)	8, 180
BbvI	GCAGC	4 cut(s)	113, 244, 1402, 2395
BciT130I	CCWGG	4 cut(s)	1196, 2299, 2702, 2811
BcnI	CCSGG	2 cut(s)	269, 1120
BcoDI	GTCTC	7 cut(s)	32, 467, 921, 1700, 1915, 2011, 2232
BfaI	CTAG	5 cut(s)	387, 1404, 1500, 1643, 2306
BfmI	CTRYAG	1 cut(s)	2010
BfuAI	ACCTGC	2 cut(s)	1240, 1702
BglI	GCCNNNNNGGC	2 cut(s)	149, 229
BglII	AGATCT	1 cut(s)	2109
BisI	GCNGC	6 cut(s)	127, 233, 1301, 1416, 2384, 2856
BlpI	GCTNAGC	1 cut(s)	2031
BlsI	GCNGC	6 cut(s)	128, 234, 1302, 1417, 2385, 2857
Bme1390I	CCNGG	6 cut(s)	269, 1120, 1196, 2299, 2702, 2811
Bme18I	GGWCC	4 cut(s)	603, 1675, 1762, 2836
BmeRI	GACNNNNNGTC	1 cut(s)	1681
BmeT110I	CYCGRG	1 cut(s)	1088
BmgT120I	GGNCC	7 cut(s)	198, 603, 1675, 1728, 1762, 2228, 2836
BmiI	GGNNCC	9 cut(s)	481, 605, 674, 1521, 1677, 1764, 1814, 2229, 2370
BmrFI	CCNGG	6 cut(s)	269, 1120, 1196, 2299, 2702, 2811
BmrI	ACTGGG	5 cut(s)	32, 321, 568, 1717, 1811
BmsI	GCATC	8 cut(s)	427, 762, 840, 1012, 1287, 1402, 2719, 2753
BmuI	ACTGGG	5 cut(s)	32, 321, 568, 1717, 1811
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	2320
Bpu1102I	GCTNAGC	1 cut(s)	2031
Bpu14I	TTCGAA	1 cut(s)	262
BpuEI	CTTGAG	2 cut(s)	761, 1057
BpuMI	CCSGG	2 cut(s)	269, 1120
BsaBI	GATNNNNATC	2 cut(s)	941, 2367
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	5 cut(s)	267, 1119, 1195, 2412, 2809
BsaWI	WCCGGW	4 cut(s)	958, 997, 2053, 2377
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 51, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 683, 1157, 1685
Bse118I	RCCGGY	1 cut(s)	1730
Bse21I	CCTNAGG	1 cut(s)	2622
Bse3DI	GCAATG	3 cut(s)	773, 2406, 2469
Bse8I	GATNNNNATC	2 cut(s)	941, 2367
BseAI	TCCGGA	2 cut(s)	2053, 2377
BseBI	CCWGG	4 cut(s)	1196, 2299, 2702, 2811
BseDI	CCNNGG	5 cut(s)	267, 1119, 1195, 2412, 2809
BseJI	GATNNNNATC	2 cut(s)	941, 2367
BseLI	CCNNNNNNNGG	4 cut(s)	274, 683, 1157, 1685
BseMI	GCAATG	3 cut(s)	773, 2406, 2469
BseRI	GAGGAG	2 cut(s)	1067, 2738
BseSI	GKGCMC	1 cut(s)	677
BseXI	GCAGC	4 cut(s)	113, 244, 1402, 2395
BseYI	CCCAGC	1 cut(s)	528
BsgI	GTGCAG	1 cut(s)	1218
BshFI	GGCC	8 cut(s)	152, 200, 351, 832, 1334, 1730, 1790, 2230
BshNI	GGYRCC	1 cut(s)	672
BsiHKAI	GWGCWC	2 cut(s)	8, 180
BsiHKCI	CYCGRG	1 cut(s)	1088
BsiSI	CCGG	7 cut(s)	269, 959, 998, 1119, 1731, 2054, 2378
BslFI	GGGAC	2 cut(s)	2601, 2792
BslI	CCNNNNNNNGG	4 cut(s)	274, 683, 1157, 1685
BsmAI	GTCTC	7 cut(s)	32, 467, 921, 1700, 1915, 2011, 2232
BsmBI	CGTCTC	1 cut(s)	1915
BsmFI	GGGAC	2 cut(s)	2601, 2792
BsnI	GGCC	8 cut(s)	152, 200, 351, 832, 1334, 1730, 1790, 2230
Bso31I	GGTCTC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	1088
Bsp119I	TTCGAA	1 cut(s)	262
Bsp1286I	GDGCHC	5 cut(s)	8, 180, 225, 677, 1817
Bsp13I	TCCGGA	2 cut(s)	2053, 2377
Bsp143I	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
Bsp1720I	GCTNAGC	1 cut(s)	2031
BspACI	CCGC	8 cut(s)	112, 235, 335, 356, 455, 794, 1184, 1301
BspANI	GGCC	8 cut(s)	152, 200, 351, 832, 1334, 1730, 1790, 2230
BspEI	TCCGGA	2 cut(s)	2053, 2377
BspLI	GGNNCC	9 cut(s)	481, 605, 674, 1521, 1677, 1764, 1814, 2229, 2370
BspMAI	CTGCAG	1 cut(s)	2014
BspMI	ACCTGC	2 cut(s)	1240, 1702
BspPI	GGATC	6 cut(s)	570, 620, 804, 2363, 2376, 2624
BspQI	GCTCTTC	2 cut(s)	2287, 2562
BspT104I	TTCGAA	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	672
BspTNI	GGTCTC	1 cut(s)	32
BsrBI	CCGCTC	1 cut(s)	335
BsrDI	GCAATG	3 cut(s)	773, 2406, 2469
BsrFI	RCCGGY	1 cut(s)	1730
BssAI	RCCGGY	1 cut(s)	1730
BssECI	CCNNGG	5 cut(s)	267, 1119, 1195, 2412, 2809
BssMI	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
BssNI	GRCGYC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	1245
BssT1I	CCWWGG	1 cut(s)	2412
Bst2BI	CACGAG	1 cut(s)	1245
Bst2UI	CCWGG	4 cut(s)	1196, 2299, 2702, 2811
Bst4CI	ACNGT	5 cut(s)	691, 2322, 2353, 2547, 2840
Bst6I	CTCTTC	4 cut(s)	188, 1696, 2287, 2562
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	2 cut(s)	772, 2549
BstBI	TTCGAA	1 cut(s)	262
BstC8I	GCNNGC	2 cut(s)	453, 2541
BstKTI	GATC	8 cut(s)	495, 517, 565, 615, 799, 2112, 2371, 2632
BstMAI	GTCTC	7 cut(s)	32, 467, 921, 1700, 1915, 2011, 2232
BstMBI	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
BstNI	CCWGG	4 cut(s)	1196, 2299, 2702, 2811
BstNSI	RCATGY	3 cut(s)	316, 347, 1850
BstSCI	CCNGG	6 cut(s)	267, 1118, 1194, 2297, 2700, 2809
BstSFI	CTRYAG	1 cut(s)	2010
BstSLI	GKGCMC	1 cut(s)	677
BstV1I	GCAGC	4 cut(s)	113, 244, 1402, 2395
BstX2I	RGATCY	3 cut(s)	612, 2109, 2368
BstXI	CCANNNNNNTGG	3 cut(s)	359, 669, 1287
BstYI	RGATCY	3 cut(s)	612, 2109, 2368
Bsu36I	CCTNAGG	1 cut(s)	2622
BsuRI	GGCC	8 cut(s)	152, 200, 351, 832, 1334, 1730, 1790, 2230
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	6 cut(s)	334, 916, 1135, 1324, 1620, 1730
BveI	ACCTGC	2 cut(s)	1240, 1702
Cac8I	GCNNGC	2 cut(s)	453, 2541
CaiI	CAGNNNCTG	1 cut(s)	2018
Cfr10I	RCCGGY	1 cut(s)	1730
Cfr13I	GGNCC	7 cut(s)	198, 603, 1675, 1728, 1762, 2228, 2836
Csp6I	GTAC	8 cut(s)	409, 687, 1229, 1744, 2090, 2188, 2334, 2694
CviAII	CATG	6 cut(s)	313, 344, 1238, 1717, 1847, 2224
CviQI	GTAC	8 cut(s)	409, 687, 1229, 1744, 2090, 2188, 2334, 2694
DpnI	GATC	8 cut(s)	494, 516, 564, 614, 798, 2111, 2370, 2631
DpnII	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
DraI	TTTAAA	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	1904
DriI	GACNNNNNGTC	1 cut(s)	1681
DseDI	GACNNNNNNGTC	1 cut(s)	1904
EaeI	YGGCCR	3 cut(s)	150, 349, 1788
Eam1104I	CTCTTC	4 cut(s)	188, 1696, 2287, 2562
Eam1105I	GACNNNNNGTC	1 cut(s)	1681
EarI	CTCTTC	4 cut(s)	188, 1696, 2287, 2562
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	2412
Eco147I	AGGCCT	1 cut(s)	1334
Eco24I	GRGCYC	3 cut(s)	8, 225, 1817
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	1276
Eco47I	GGWCC	4 cut(s)	603, 1675, 1762, 2836
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	4 cut(s)	605, 675, 1088, 2586
Eco81I	CCTNAGG	1 cut(s)	2622
Eco88I	CYCGRG	1 cut(s)	1088
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	2 cut(s)	198, 1675
EcoRII	CCWGG	4 cut(s)	1194, 2297, 2700, 2809
EcoRV	GATATC	1 cut(s)	1276
EcoT14I	CCWWGG	1 cut(s)	2412
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	3 cut(s)	8, 225, 1817
ErhI	CCWWGG	1 cut(s)	2412
Esp3I	CGTCTC	1 cut(s)	1915
FaeI	CATG	6 cut(s)	316, 347, 1241, 1720, 1850, 2227
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	2601, 2792
FatI	CATG	6 cut(s)	312, 343, 1237, 1716, 1846, 2223
FauI	CCCGC	1 cut(s)	328
FauNDI	CATATG	4 cut(s)	553, 790, 2559, 2608
Fnu4HI	GCNGC	6 cut(s)	127, 233, 1301, 1416, 2384, 2856
FriOI	GRGCYC	3 cut(s)	8, 225, 1817
Fsp4HI	GCNGC	6 cut(s)	127, 233, 1301, 1416, 2384, 2856
FspBI	CTAG	5 cut(s)	387, 1404, 1500, 1643, 2306
GluI	GCNGC	6 cut(s)	127, 233, 1301, 1416, 2384, 2856
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	2320
HaeIII	GGCC	8 cut(s)	152, 200, 351, 832, 1334, 1730, 1790, 2230
HapII	CCGG	7 cut(s)	269, 959, 998, 1119, 1731, 2054, 2378
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	316, 347, 1241, 1720, 1850, 2227
HinfI	GANTC	8 cut(s)	102, 1875, 1988, 2015, 2081, 2198, 2240, 2648
HpaII	CCGG	7 cut(s)	269, 959, 998, 1119, 1731, 2054, 2378
HphI	GGTGA	6 cut(s)	46, 79, 1355, 1480, 1582, 2310
Hpy166II	GTNNAC	3 cut(s)	1471, 2318, 2336
Hpy8I	GTNNAC	3 cut(s)	1471, 2318, 2336
Hpy99I	CGWCG	2 cut(s)	170, 173
HpyAV	CCTTC	9 cut(s)	61, 100, 812, 872, 1340, 1459, 1604, 1936, 2264
HpyCH4III	ACNGT	5 cut(s)	691, 2322, 2353, 2547, 2840
HpyCH4IV	ACGT	7 cut(s)	168, 303, 397, 1353, 1507, 1805, 2125
HpySE526I	ACGT	7 cut(s)	168, 303, 397, 1353, 1507, 1805, 2125
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	6 cut(s)	316, 347, 1241, 1720, 1850, 2227
Kpn2I	TCCGGA	2 cut(s)	2053, 2377
Kzo9I	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
LguI	GCTCTTC	2 cut(s)	2287, 2562
LmnI	GCTCC	8 cut(s)	332, 457, 974, 1000, 1214, 1812, 2380, 2391
Lsp1109I	GCAGC	4 cut(s)	113, 244, 1402, 2395
LweI	GCATC	8 cut(s)	427, 762, 840, 1012, 1287, 1402, 2719, 2753
MaeI	CTAG	5 cut(s)	387, 1404, 1500, 1643, 2306
MaeII	ACGT	7 cut(s)	168, 303, 397, 1353, 1507, 1805, 2125
MaeIII	GTNAC	7 cut(s)	339, 417, 1082, 1247, 2356, 2416, 2661
MalI	GATC	8 cut(s)	494, 516, 564, 614, 798, 2111, 2370, 2631
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
MfeI	CAATTG	1 cut(s)	667
MflI	RGATCY	3 cut(s)	612, 2109, 2368
MhlI	GDGCHC	5 cut(s)	8, 180, 225, 677, 1817
MlsI	TGGCCA	1 cut(s)	1790
MluNI	TGGCCA	1 cut(s)	1790
MlyI	GAGTC	4 cut(s)	96, 1982, 2009, 2234
MmeI	TCCRAC	3 cut(s)	55, 61, 1365
Mox20I	TGGCCA	1 cut(s)	1790
Mph1103I	ATGCAT	1 cut(s)	442
MroI	TCCGGA	2 cut(s)	2053, 2377
MroXI	GAANNNNTTC	4 cut(s)	1167, 1524, 2049, 2274
MscI	TGGCCA	1 cut(s)	1790
MseI	TTAA	9 cut(s)	120, 393, 534, 629, 1155, 1665, 2070, 2445, 2534
MslI	CAYNNNNRTG	2 cut(s)	2480, 2491
Msp20I	TGGCCA	1 cut(s)	1790
MspA1I	CMGCKG	4 cut(s)	235, 455, 2030, 2858
MspI	CCGG	7 cut(s)	269, 959, 998, 1119, 1731, 2054, 2378
MspR9I	CCNGG	6 cut(s)	269, 1120, 1196, 2299, 2702, 2811
MunI	CAATTG	1 cut(s)	667
MvaI	CCWGG	4 cut(s)	1196, 2299, 2702, 2811
NciI	CCSGG	2 cut(s)	269, 1120
NdeI	CATATG	4 cut(s)	553, 790, 2559, 2608
NdeII	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
NlaIII	CATG	6 cut(s)	316, 347, 1241, 1720, 1850, 2227
NlaIV	GGNNCC	9 cut(s)	481, 605, 674, 1521, 1677, 1764, 1814, 2229, 2370
NmuCI	GTSAC	3 cut(s)	1082, 1247, 2356
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	3 cut(s)	316, 347, 1850
NspV	TTCGAA	1 cut(s)	262
PaeR7I	CTCGAG	1 cut(s)	1088
PceI	AGGCCT	1 cut(s)	1334
PciI	ACATGT	2 cut(s)	312, 343
PciSI	GCTCTTC	2 cut(s)	2287, 2562
PdmI	GAANNNNTTC	4 cut(s)	1167, 1524, 2049, 2274
PfeI	GAWTC	4 cut(s)	1875, 2081, 2198, 2648
PflFI	GACNNNGTC	1 cut(s)	1190
PflMI	CCANNNNNTGG	1 cut(s)	1157
PkrI	GCNGC	6 cut(s)	128, 234, 1302, 1417, 2385, 2857
PleI	GAGTC	4 cut(s)	96, 1982, 2009, 2234
PpsI	GAGTC	4 cut(s)	96, 1982, 2009, 2234
PpuMI	RGGWCCY	1 cut(s)	1675
PscI	ACATGT	2 cut(s)	312, 343
PshBI	ATTAAT	1 cut(s)	2534
PsiI	TTATAA	2 cut(s)	597, 1358
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	2 cut(s)	1353, 1507
Psp5II	RGGWCCY	1 cut(s)	1675
Psp6I	CCWGG	4 cut(s)	1194, 2297, 2700, 2809
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	4 cut(s)	1194, 2297, 2700, 2809
PspN4I	GGNNCC	9 cut(s)	481, 605, 674, 1521, 1677, 1764, 1814, 2229, 2370
PspPI	GGNCC	7 cut(s)	198, 603, 1675, 1728, 1762, 2228, 2836
PspPPI	RGGWCCY	1 cut(s)	1675
PstI	CTGCAG	1 cut(s)	2014
PstNI	CAGNNNCTG	1 cut(s)	2018
PsuI	RGATCY	3 cut(s)	612, 2109, 2368
PsyI	GACNNNGTC	1 cut(s)	1190
PvuII	CAGCTG	2 cut(s)	2030, 2858
RsaI	GTAC	8 cut(s)	410, 688, 1230, 1745, 2091, 2189, 2335, 2695
RsaNI	GTAC	8 cut(s)	409, 687, 1229, 1744, 2090, 2188, 2334, 2694
RseI	CAYNNNNRTG	2 cut(s)	2480, 2491
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	2 cut(s)	2287, 2562
SaqAI	TTAA	9 cut(s)	120, 393, 534, 629, 1155, 1665, 2070, 2445, 2534
SatI	GCNGC	6 cut(s)	127, 233, 1301, 1416, 2384, 2856
Sau3AI	GATC	8 cut(s)	492, 514, 562, 612, 796, 2109, 2368, 2629
Sau96I	GGNCC	7 cut(s)	198, 603, 1675, 1728, 1762, 2228, 2836
SchI	GAGTC	4 cut(s)	96, 1982, 2009, 2234
ScrFI	CCNGG	6 cut(s)	269, 1120, 1196, 2299, 2702, 2811
SduI	GDGCHC	5 cut(s)	8, 180, 225, 677, 1817
SfaNI	GCATC	8 cut(s)	427, 762, 840, 1012, 1287, 1402, 2719, 2753
SfcI	CTRYAG	1 cut(s)	2010
Sfr274I	CTCGAG	1 cut(s)	1088
SfuI	TTCGAA	1 cut(s)	262
SinI	GGWCC	4 cut(s)	603, 1675, 1762, 2836
SlaI	CTCGAG	1 cut(s)	1088
SmiMI	CAYNNNNRTG	2 cut(s)	2480, 2491
SmlI	CTYRAG	3 cut(s)	776, 1072, 1088
SmoI	CTYRAG	3 cut(s)	776, 1072, 1088
SseBI	AGGCCT	1 cut(s)	1334
SsiI	CCGC	8 cut(s)	112, 235, 335, 356, 455, 794, 1184, 1301
SspMI	CTAG	5 cut(s)	387, 1404, 1500, 1643, 2306
SstI	GAGCTC	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	1334
StyD4I	CCNGG	6 cut(s)	267, 1118, 1194, 2297, 2700, 2809
StyI	CCWWGG	1 cut(s)	2412
TaaI	ACNGT	5 cut(s)	691, 2322, 2353, 2547, 2840
TaiI	ACGT	7 cut(s)	171, 306, 400, 1356, 1510, 1808, 2128
TaqI	TCGA	5 cut(s)	262, 309, 471, 1089, 2628
TatI	WGTACW	1 cut(s)	2089
TauI	GCSGC	1 cut(s)	1303
TfiI	GAWTC	4 cut(s)	1875, 2081, 2198, 2648
Tru1I	TTAA	9 cut(s)	120, 393, 534, 629, 1155, 1665, 2070, 2445, 2534
Tru9I	TTAA	9 cut(s)	120, 393, 534, 629, 1155, 1665, 2070, 2445, 2534
TscAI	CASTG	6 cut(s)	334, 916, 1135, 1324, 1627, 1730
TseFI	GTSAC	3 cut(s)	1082, 1247, 2356
TseI	GCWGC	5 cut(s)	126, 232, 1415, 2383, 2855
Tsp45I	GTSAC	3 cut(s)	1082, 1247, 2356
TspGWI	ACGGA	3 cut(s)	195, 1274, 2378
TspRI	CASTG	6 cut(s)	334, 916, 1135, 1324, 1627, 1730
Tth111I	GACNNNGTC	1 cut(s)	1190
Van91I	CCANNNNNTGG	1 cut(s)	1157
VpaK11BI	GGWCC	4 cut(s)	603, 1675, 1762, 2836
VspI	ATTAAT	1 cut(s)	2534
XapI	RAATTY	7 cut(s)	296, 570, 893, 1256, 1360, 2454, 2817
XceI	RCATGY	3 cut(s)	316, 347, 1850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XhoI	CTCGAG	1 cut(s)	1088
XmnI	GAANNNNTTC	4 cut(s)	1167, 1524, 2049, 2274
XspI	CTAG	5 cut(s)	387, 1404, 1500, 1643, 2306
ZraI	GACGTC	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.