Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010721

Physical Location & Seq

Genomic Coordinates Forward (+)

978864 .. 981677

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCGAGACTGAACCCAAATCCGTCGCTCCGGAGCTTCTGGAATGGCCCAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTACCGCGTCGGCGACCTCGAGCGCACGATCAAGTTTTACACTGAGGCTCTGGGGATGAAGCTTTTGCGGCAGAGGGATATCCCGGAAGAGAAGTACTCCAACGCTTTCCTCGGATTCGGGCCCGAAGAAACCAACTTCGTTGTGGAGCTCACTTACAACTACGGCGTCACTTCCTATGATATCGGCACCGGGTTCGGGCACTTCGCCATCGCCACTCCTGATGTGTACAAATTGGTGGAGAATATTCGTGCTAAGGGAGGGAATGTGACTAGAGAGCCTGGTCCGGTTAAAGGCGGGAACAGTGTGATCGCGTTTGTGAAGGATCCTGATGGTTACACTTTTGAGCTTATTCAGAGGCCTCCGACTCCTGAGCCGCTTTGTCAGATTATGCTTCGTGTTGGTGATCTTGATAAGTCAATCAGCTTCTATGAAAGGGCATTAGGATTGAAGCTTTTGAGGAGGATTGAGAGGCCTGAGTACAAGTACACCATAGCTATCCTCGGATATGCTGAAGAAGACAAGACAACTATTTTGGAGCTGACTTATAACTATGGTGTGACTGAATATACCAAGGGGAATGCGTATGCACAGATTGCTGTTGGAACTGATGATGTATACAAAAGTGCCGAGGTTGTCGACTTGGTTACAAAAGAGCTTGGAGGAAAGATAACAAGACAGCCTGGACCAATTCCAGGACTCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTTTTGGTTGACAATGAGGACTTTCTCAAGGAGCTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

290

Amino Acids

32.56

Weight (kDa)

5.28

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	23 - 144	1.3e-26	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	26 - 129	2.8e-09	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	156 - 275	7.7e-15	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840
fragaria_vesca	FvH4_3g01920
malus_domestica	MD05G1348100.v1.1
prunus_persica	Prupe.4G019400_v2.0.a1
pyrus_communis	pycom05g31560 pycom10g27300
rosa_chinensis	RchiOBHm_Chr5g0002821
rosa_laevigata	RLG00000031062
rosa_multiflora	Rmu_co8395511.1_g000001 Rmu_sc0013603.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073030
rosa_rugosa	Rorug04G0399900
rosa_samantha	Rh5BG025400 Rh5DG023900
rosa_wichuraiana	Rw5G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccB1I	GGYRCC	1 cut(s)	269
AccI	GTMKAC	3 cut(s)	84, 699, 720
AccII	CGCG	2 cut(s)	90, 395
AccIII	TCCGGA	1 cut(s)	31
AciI	CCGC	5 cut(s)	67, 88, 151, 378, 458
AclWI	GGATC	2 cut(s)	401, 414
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	4 cut(s)	179, 311, 563, 569
AfiI	CCNNNNNNNGG	3 cut(s)	279, 374, 776
AgsI	TTSAA	1 cut(s)	532
AjnI	CCWGG	4 cut(s)	361, 763, 775, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	815, 847
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	401, 414
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	5 cut(s)	3, 47, 203, 440, 554
ApaI	GGGCCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	862
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspLEI	GCGC	2 cut(s)	66, 108
AspS9I	GGNCC	6 cut(s)	48, 203, 204, 365, 767, 808
AsuC2I	CCSGG	2 cut(s)	167, 274
AsuHPI	GGTGA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	3 cut(s)	365, 767, 808
BaeGI	GKGCMC	2 cut(s)	207, 285
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	2 cut(s)	207, 234
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	849
BccI	CCATC	3 cut(s)	299, 407, 809
BceAI	ACGGC	2 cut(s)	65, 262
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	4 cut(s)	363, 765, 777, 806
BcnI	CCSGG	2 cut(s)	167, 274
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	863
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	4 cut(s)	67, 152, 458, 863
BlsI	GCNGC	4 cut(s)	68, 153, 459, 864
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	6 cut(s)	167, 274, 363, 765, 777, 806
Bme18I	GGWCC	3 cut(s)	365, 767, 808
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	6 cut(s)	48, 203, 204, 365, 767, 808
BmiI	GGNNCC	4 cut(s)	205, 271, 408, 810
BmrFI	CCNGG	6 cut(s)	167, 274, 363, 765, 777, 806
BpiI	GAAGAC	1 cut(s)	606
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu10I	CCTNAGC	2 cut(s)	336, 453
BpuEI	CTTGAG	1 cut(s)	839
BpuMI	CCSGG	2 cut(s)	167, 274
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	4 cut(s)	193, 583, 654, 711
BsaWI	WCCGGW	2 cut(s)	31, 367
BsaXI	ACNNNNNCTCC	3 cut(s)	333, 363, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 374, 776
BseAI	TCCGGA	1 cut(s)	31
BseBI	CCWGG	4 cut(s)	363, 765, 777, 806
BseDI	CCNNGG	4 cut(s)	193, 583, 654, 711
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	279, 374, 776
BseMII	CTCAG	3 cut(s)	117, 444, 549
BseRI	GAGGAG	2 cut(s)	62, 556
BseSI	GKGCMC	2 cut(s)	207, 285
BseXI	GCAGC	1 cut(s)	849
Bsh1236I	CGCG	2 cut(s)	90, 395
BshFI	GGCC	5 cut(s)	5, 49, 205, 442, 556
BshNI	GGYRCC	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	32, 167, 273, 368
BslI	CCNNNNNNNGG	3 cut(s)	279, 374, 776
BsmAI	GTCTC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	5 cut(s)	5, 49, 205, 442, 556
BsoBI	CYCGRG	1 cut(s)	101
Bsp120I	GGGCCC	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	207, 234, 285
Bsp13I	TCCGGA	1 cut(s)	31
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	111, 390, 406, 487
BspACI	CCGC	5 cut(s)	67, 88, 151, 378, 458
BspANI	GGCC	5 cut(s)	5, 49, 205, 442, 556
BspCNI	CTCAG	3 cut(s)	118, 445, 550
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	2 cut(s)	90, 395
BspLI	GGNNCC	4 cut(s)	205, 271, 408, 810
BspMAI	CTGCAG	1 cut(s)	867
BspPI	GGATC	2 cut(s)	401, 414
BspT107I	GGYRCC	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	193, 583, 654, 711
BssMI	GATC	4 cut(s)	111, 390, 406, 487
BssNAI	GTATAC	1 cut(s)	700
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	654
Bst1107I	GTATAC	1 cut(s)	700
Bst2UI	CCWGG	4 cut(s)	363, 765, 777, 806
Bst4CI	ACNGT	2 cut(s)	386, 829
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	126, 336, 453, 558
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	2 cut(s)	90, 395
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 108
BstKTI	GATC	4 cut(s)	114, 393, 409, 490
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	111, 390, 406, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 677
BstNI	CCWGG	4 cut(s)	363, 765, 777, 806
BstSCI	CCNGG	6 cut(s)	165, 272, 361, 763, 775, 804
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	2 cut(s)	207, 285
BstUI	CGCG	2 cut(s)	90, 395
BstV1I	GCAGC	1 cut(s)	849
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	819
BstYI	RGATCY	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	700
BsuRI	GGCC	5 cut(s)	5, 49, 205, 442, 556
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	123, 391
CfoI	GCGC	2 cut(s)	66, 108
Cfr13I	GGNCC	6 cut(s)	48, 203, 204, 365, 767, 808
CseI	GACGC	2 cut(s)	79, 238
Csp6I	GTAC	4 cut(s)	178, 310, 562, 568
CviQI	GTAC	4 cut(s)	178, 310, 562, 568
DdeI	CTNAG	4 cut(s)	126, 336, 453, 558
DpnI	GATC	4 cut(s)	113, 392, 408, 489
DpnII	GATC	4 cut(s)	111, 390, 406, 487
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	654
Eco147I	AGGCCT	2 cut(s)	442, 556
Eco24I	GRGCYC	2 cut(s)	207, 234
Eco32I	GATATC	2 cut(s)	163, 265
Eco47I	GGWCC	3 cut(s)	365, 767, 808
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	232
EcoRII	CCWGG	4 cut(s)	361, 763, 775, 804
EcoRV	GATATC	2 cut(s)	163, 265
EcoT14I	CCWWGG	1 cut(s)	654
EcoT38I	GRGCYC	2 cut(s)	207, 234
ErhI	CCWWGG	1 cut(s)	654
FauI	CCCGC	1 cut(s)	371
FblI	GTMKAC	3 cut(s)	84, 699, 720
Fnu4HI	GCNGC	4 cut(s)	67, 152, 458, 863
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	2 cut(s)	207, 234
Fsp4HI	GCNGC	4 cut(s)	67, 152, 458, 863
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	65, 107
GluI	GCNGC	4 cut(s)	67, 152, 458, 863
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	5 cut(s)	5, 49, 205, 442, 556
HapII	CCGG	4 cut(s)	32, 167, 273, 368
HgaI	GACGC	2 cut(s)	79, 238
HhaI	GCGC	2 cut(s)	66, 108
Hin1I	GRCGYC	1 cut(s)	249
Hin6I	GCGC	2 cut(s)	64, 106
HinP1I	GCGC	2 cut(s)	64, 106
HincII	GTYRAC	2 cut(s)	721, 838
HindII	GTYRAC	2 cut(s)	721, 838
HindIII	AAGCTT	2 cut(s)	143, 533
HinfI	GANTC	3 cut(s)	198, 448, 780
HpaII	CCGG	4 cut(s)	32, 167, 273, 368
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	6 cut(s)	85, 310, 570, 700, 721, 838
Hpy188I	TCNGA	5 cut(s)	197, 438, 447, 468, 587
Hpy188III	TCNNGA	6 cut(s)	32, 41, 302, 410, 452, 491
Hpy8I	GTNNAC	6 cut(s)	85, 310, 570, 700, 721, 838
Hpy99I	CGWCG	2 cut(s)	29, 95
HpyAV	CCTTC	2 cut(s)	49, 397
HpyCH4III	ACNGT	2 cut(s)	386, 829
HpyCH4V	TGCA	2 cut(s)	671, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 677
HpyF3I	CTNAG	4 cut(s)	126, 336, 453, 558
Hsp92I	GRCGYC	1 cut(s)	249
HspAI	GCGC	2 cut(s)	64, 106
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	111, 390, 406, 487
LmnI	GCTCC	5 cut(s)	34, 34, 229, 619, 859
Lsp1109I	GCAGC	1 cut(s)	849
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	5 cut(s)	250, 349, 416, 640, 727
MalI	GATC	4 cut(s)	113, 392, 408, 489
MboI	GATC	4 cut(s)	111, 390, 406, 487
MboII	GAAGA	4 cut(s)	182, 221, 608, 611
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	3 cut(s)	207, 234, 285
MluCI	AATT	2 cut(s)	314, 771
MlyI	GAGTC	2 cut(s)	442, 774
MmeI	TCCRAC	4 cut(s)	207, 470, 664, 800
MroI	TCCGGA	1 cut(s)	31
MseI	TTAA	1 cut(s)	372
MspI	CCGG	4 cut(s)	32, 167, 273, 368
MspR9I	CCNGG	6 cut(s)	167, 274, 363, 765, 777, 806
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	4 cut(s)	363, 765, 777, 806
MvnI	CGCG	2 cut(s)	90, 395
MwoI	GCNNNNNNNGC	2 cut(s)	151, 677
NciI	CCSGG	2 cut(s)	167, 274
NdeII	GATC	4 cut(s)	111, 390, 406, 487
NlaIV	GGNNCC	4 cut(s)	205, 271, 408, 810
NmeAIII	GCCGAG	2 cut(s)	31, 736
NmuCI	GTSAC	3 cut(s)	250, 349, 640
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	2 cut(s)	442, 556
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	198
PfoI	TCCNGGA	3 cut(s)	165, 775, 804
PkrI	GCNGC	4 cut(s)	68, 153, 459, 864
PleI	GAGTC	2 cut(s)	442, 774
PpsI	GAGTC	2 cut(s)	442, 774
PsiI	TTATAA	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	4 cut(s)	361, 763, 775, 804
PspGI	CCWGG	4 cut(s)	361, 763, 775, 804
PspN4I	GGNNCC	4 cut(s)	205, 271, 408, 810
PspOMI	GGGCCC	1 cut(s)	203
PspPI	GGNCC	6 cut(s)	48, 203, 204, 365, 767, 808
PspXI	VCTCGAGB	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	867
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	4 cut(s)	179, 311, 563, 569
RsaNI	GTAC	4 cut(s)	178, 310, 562, 568
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	67, 152, 458, 863
Sau3AI	GATC	4 cut(s)	111, 390, 406, 487
Sau96I	GGNCC	6 cut(s)	48, 203, 204, 365, 767, 808
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	442, 774
ScrFI	CCNGG	6 cut(s)	167, 274, 363, 765, 777, 806
SduI	GDGCHC	3 cut(s)	207, 234, 285
SfcI	CTRYAG	1 cut(s)	863
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	3 cut(s)	365, 767, 808
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 854
SmoI	CTYRAG	2 cut(s)	101, 854
Sse9I	AATT	2 cut(s)	314, 771
SseBI	AGGCCT	2 cut(s)	442, 556
SsiI	CCGC	5 cut(s)	67, 88, 151, 378, 458
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	2 cut(s)	442, 556
StyD4I	CCNGG	6 cut(s)	165, 272, 361, 763, 775, 804
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	2 cut(s)	386, 829
TaqI	TCGA	2 cut(s)	102, 720
TasI	AATT	2 cut(s)	314, 771
TatI	WGTACW	4 cut(s)	177, 309, 561, 567
TauI	GCSGC	3 cut(s)	69, 154, 460
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	130, 391
TseFI	GTSAC	3 cut(s)	250, 349, 640
TseI	GCWGC	1 cut(s)	862
Tsp45I	GTSAC	3 cut(s)	250, 349, 640
TspDTI	ATGAA	2 cut(s)	155, 528
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	130, 391
VpaK11BI	GGWCC	3 cut(s)	365, 767, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	3 cut(s)	84, 699, 720
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.