Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010721

Physical Location & Seq

Genomic Coordinates Forward (+)

1795325 .. 1799820

Gene Structure 4496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG025400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGCTTCTGGAATGGCCGAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTACCGCGTCGGCGATCTGGAGCGCACCATCAAGTTTTACACTGAGGCTCTGGGGATGAAGCTGTTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATGCTTTTCTCGGATTCGGACCCGAAGAAACGAACTTTGTAGTGGAGCTCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGACATTTCGCTATCGCTACCCCAGATGTTTACAAATTGGTGGAGGATATTCGTGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGAACAGTATCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTTATTCAGAGGCCTTCAACCCCTGAGCCGCTTTGTCAGGTTATGCTTCGAGTTGGTGATCTTGAGCGCGCAATCAGCTTCTATGAAAGGGCTCTAGGGTTGAAGCTTTTAAGGAGGATTGAGAGACCTGAGTACAAGTACAACATAGCTATCCTGGGATATGCTGAAGAAGACCAGACAACTATTTTGGAGCTGACTTATAACTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTGTTGGCACTGATGATGTATACAAAAGTGCTGAGGTTGTTGACTTGGTTATAAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGACTCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTCCTGGTTGACAATGTGGACTTTCTCAAGGAACTGCAAGAACTGTATCCCGATTCATATAATAATACCAAGGCAATTGAGTGCTTTATTCATATTATTATGTTACCCTTCCAAAGAGAAGACCATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

319

Amino Acids

36.25

Weight (kDa)

5.21

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	23 - 144	2.7e-26	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	26 - 132	1.3e-09	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	156 - 275	9.4e-15	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840
fragaria_vesca	FvH4_3g01920
malus_domestica	MD05G1348100.v1.1
prunus_persica	Prupe.4G019400_v2.0.a1
pyrus_communis	pycom05g31560 pycom10g27300
rosa_chinensis	RchiOBHm_Chr5g0002821
rosa_laevigata	RLG00000031062
rosa_multiflora	Rmu_co8395511.1_g000001 Rmu_sc0013603.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073030
rosa_rugosa	Rorug04G0399900
rosa_samantha	Rh5BG025400 Rh5DG023900
rosa_wichuraiana	Rw5G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	240, 630, 731
AasI	GACNNNNNNGTC	1 cut(s)	765
AccI	GTMKAC	2 cut(s)	84, 699
AccII	CGCG	2 cut(s)	90, 498
AccIII	TCCGGA	2 cut(s)	31, 166
AciI	CCGC	4 cut(s)	67, 88, 151, 458
AcoI	YGGCCR	2 cut(s)	3, 47
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	3 cut(s)	179, 563, 569
AfiI	CCNNNNNNNGG	3 cut(s)	342, 374, 776
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	447, 532
AjnI	CCWGG	6 cut(s)	361, 582, 763, 775, 804, 831
AluBI	AGCT	9 cut(s)	37, 145, 232, 430, 507, 535, 578, 622, 739
AluI	AGCT	9 cut(s)	37, 145, 232, 430, 507, 535, 578, 622, 739
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	2, 547
Aor13HI	TCCGGA	2 cut(s)	31, 166
AoxI	GGCC	3 cut(s)	3, 47, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspLEI	GCGC	4 cut(s)	66, 108, 498, 500
AspS9I	GGNCC	5 cut(s)	203, 365, 406, 767, 808
AsuHPI	GGTGA	1 cut(s)	497
AvaII	GGWCC	5 cut(s)	203, 365, 406, 767, 808
BanII	GRGCYC	2 cut(s)	234, 523
BbsI	GAAGAC	2 cut(s)	606, 954
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	711
BccI	CCATC	3 cut(s)	119, 407, 809
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	6 cut(s)	363, 584, 765, 777, 806, 833
BciVI	GTATCC	1 cut(s)	885
BcoDI	GTCTC	2 cut(s)	2, 547
BfaI	CTAG	3 cut(s)	354, 524, 756
BfoI	RGCGCY	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	885
BisI	GCNGC	3 cut(s)	67, 152, 458
BlsI	GCNGC	3 cut(s)	68, 153, 459
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	6 cut(s)	363, 584, 765, 777, 806, 833
Bme18I	GGWCC	5 cut(s)	203, 365, 406, 767, 808
BmgT120I	GGNCC	5 cut(s)	203, 365, 406, 767, 808
BmiI	GGNNCC	5 cut(s)	30, 205, 360, 408, 810
BmrFI	CCNGG	6 cut(s)	363, 584, 765, 777, 806, 833
BpiI	GAAGAC	2 cut(s)	606, 954
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	2 cut(s)	453, 711
BpuEI	CTTGAG	2 cut(s)	512, 839
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	5 cut(s)	24, 336, 583, 654, 897
BsaWI	WCCGGW	3 cut(s)	31, 166, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 374, 776
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	2 cut(s)	31, 166
BseBI	CCWGG	6 cut(s)	363, 584, 765, 777, 806, 833
BseDI	CCNNGG	5 cut(s)	24, 336, 583, 654, 897
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	342, 374, 776
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	4 cut(s)	117, 444, 549, 702
BseNI	ACTGG	1 cut(s)	277
BsePI	GCGCGC	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	62
Bsh1236I	CGCG	2 cut(s)	90, 498
BshFI	GGCC	3 cut(s)	5, 49, 442
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	32, 167, 368
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	342, 374, 776
BsmAI	GTCTC	2 cut(s)	2, 547
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	3 cut(s)	5, 49, 442
Bso31I	GGTCTC	1 cut(s)	547
Bsp1286I	GDGCHC	2 cut(s)	234, 523
Bsp13I	TCCGGA	2 cut(s)	31, 166
Bsp143I	GATC	2 cut(s)	97, 487
BspACI	CCGC	4 cut(s)	67, 88, 151, 458
BspANI	GGCC	3 cut(s)	5, 49, 442
BspCNI	CTCAG	4 cut(s)	118, 445, 550, 703
BspEI	TCCGGA	2 cut(s)	31, 166
BspFNI	CGCG	2 cut(s)	90, 498
BspLI	GGNNCC	5 cut(s)	30, 205, 360, 408, 810
BspTNI	GGTCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	5 cut(s)	24, 336, 583, 654, 897
BssHII	GCGCGC	1 cut(s)	496
BssMI	GATC	2 cut(s)	97, 487
BssNAI	GTATAC	1 cut(s)	700
BssT1I	CCWWGG	3 cut(s)	336, 654, 897
Bst1107I	GTATAC	1 cut(s)	700
Bst2UI	CCWGG	6 cut(s)	363, 584, 765, 777, 806, 833
Bst4CI	ACNGT	3 cut(s)	386, 829, 873
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	126, 453, 558, 711
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	2 cut(s)	90, 498
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	4 cut(s)	66, 108, 498, 500
BstKTI	GATC	2 cut(s)	100, 490
BstMAI	GTCTC	2 cut(s)	2, 547
BstMBI	GATC	2 cut(s)	97, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 504, 677
BstNI	CCWGG	6 cut(s)	363, 584, 765, 777, 806, 833
BstSCI	CCNGG	6 cut(s)	361, 582, 763, 775, 804, 831
BstUI	CGCG	2 cut(s)	90, 498
BstV2I	GAAGAC	2 cut(s)	606, 954
BstXI	CCANNNNNNTGG	2 cut(s)	25, 819
BstZ17I	GTATAC	1 cut(s)	700
BsuI	GTATCC	1 cut(s)	885
BsuRI	GGCC	3 cut(s)	5, 49, 442
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	123, 687
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	4 cut(s)	66, 108, 498, 500
Cfr13I	GGNCC	5 cut(s)	203, 365, 406, 767, 808
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	178, 562, 568
CviQI	GTAC	3 cut(s)	178, 562, 568
DdeI	CTNAG	4 cut(s)	126, 453, 558, 711
DpnI	GATC	2 cut(s)	99, 489
DpnII	GATC	2 cut(s)	97, 487
DrdI	GACNNNNNNGTC	1 cut(s)	765
DseDI	GACNNNNNNGTC	1 cut(s)	765
EaeI	YGGCCR	2 cut(s)	3, 47
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	336, 654, 897
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	234, 523
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	5 cut(s)	203, 365, 406, 767, 808
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	6 cut(s)	361, 582, 763, 775, 804, 831
EcoT14I	CCWWGG	3 cut(s)	336, 654, 897
EcoT38I	GRGCYC	2 cut(s)	234, 523
ErhI	CCWWGG	3 cut(s)	336, 654, 897
FaqI	GGGAC	1 cut(s)	283
FblI	GTMKAC	2 cut(s)	84, 699
Fnu4HI	GCNGC	3 cut(s)	67, 152, 458
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	2 cut(s)	234, 523
Fsp4HI	GCNGC	3 cut(s)	67, 152, 458
FspBI	CTAG	3 cut(s)	354, 524, 756
GlaI	GCGC	4 cut(s)	65, 107, 497, 499
GluI	GCNGC	3 cut(s)	67, 152, 458
GsuI	CTGGAG	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	5, 49, 442
HapII	CCGG	3 cut(s)	32, 167, 368
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	4 cut(s)	66, 108, 498, 500
Hin6I	GCGC	4 cut(s)	64, 106, 496, 498
HinP1I	GCGC	4 cut(s)	64, 106, 496, 498
HincII	GTYRAC	2 cut(s)	721, 838
HindII	GTYRAC	2 cut(s)	721, 838
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	4 cut(s)	198, 249, 780, 881
HpaII	CCGG	3 cut(s)	32, 167, 368
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	6 cut(s)	85, 310, 700, 721, 838, 847
Hpy188I	TCNGA	3 cut(s)	197, 203, 438
Hpy188III	TCNNGA	6 cut(s)	32, 41, 101, 167, 491, 878
Hpy8I	GTNNAC	6 cut(s)	85, 310, 700, 721, 838, 847
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	49, 397, 453, 946
HpyCH4III	ACNGT	3 cut(s)	386, 829, 873
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	671, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 504, 677
HpyF3I	CTNAG	4 cut(s)	126, 453, 558, 711
HpySE526I	ACGT	1 cut(s)	422
HspAI	GCGC	4 cut(s)	64, 106, 496, 498
Kpn2I	TCCGGA	2 cut(s)	31, 166
Kzo9I	GATC	2 cut(s)	97, 487
LmnI	GCTCC	6 cut(s)	34, 34, 103, 229, 358, 619
MaeI	CTAG	3 cut(s)	354, 524, 756
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	5 cut(s)	250, 349, 416, 640, 930
MalI	GATC	2 cut(s)	99, 489
MboI	GATC	2 cut(s)	97, 487
MboII	GAAGA	6 cut(s)	64, 182, 221, 608, 611, 959
MfeI	CAATTG	1 cut(s)	903
MhlI	GDGCHC	2 cut(s)	234, 523
MluCI	AATT	3 cut(s)	314, 771, 903
MlyI	GAGTC	2 cut(s)	258, 774
MmeI	TCCRAC	1 cut(s)	800
MroI	TCCGGA	2 cut(s)	31, 166
MseI	TTAA	2 cut(s)	372, 539
MspI	CCGG	3 cut(s)	32, 167, 368
MspR9I	CCNGG	6 cut(s)	363, 584, 765, 777, 806, 833
MunI	CAATTG	1 cut(s)	903
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	6 cut(s)	363, 584, 765, 777, 806, 833
MvnI	CGCG	2 cut(s)	90, 498
MwoI	GCNNNNNNNGC	3 cut(s)	151, 504, 677
NdeII	GATC	2 cut(s)	97, 487
NlaIV	GGNNCC	5 cut(s)	30, 205, 360, 408, 810
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	250, 349, 640
PauI	GCGCGC	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	667
PfeI	GAWTC	2 cut(s)	198, 881
PfoI	TCCNGGA	2 cut(s)	775, 804
PkrI	GCNGC	3 cut(s)	68, 153, 459
PleI	GAGTC	2 cut(s)	257, 774
PpsI	GAGTC	2 cut(s)	257, 774
PpuMI	RGGWCCY	1 cut(s)	406
PsiI	TTATAA	3 cut(s)	240, 630, 731
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	6 cut(s)	361, 582, 763, 775, 804, 831
PspGI	CCWGG	6 cut(s)	361, 582, 763, 775, 804, 831
PspN4I	GGNNCC	5 cut(s)	30, 205, 360, 408, 810
PspPI	GGNCC	5 cut(s)	203, 365, 406, 767, 808
PspPPI	RGGWCCY	1 cut(s)	406
PteI	GCGCGC	1 cut(s)	496
RsaI	GTAC	3 cut(s)	179, 563, 569
RsaNI	GTAC	3 cut(s)	178, 562, 568
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	372, 539
SatI	GCNGC	3 cut(s)	67, 152, 458
Sau3AI	GATC	2 cut(s)	97, 487
Sau96I	GGNCC	5 cut(s)	203, 365, 406, 767, 808
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	258, 774
ScrFI	CCNGG	6 cut(s)	363, 584, 765, 777, 806, 833
SduI	GDGCHC	2 cut(s)	234, 523
SinI	GGWCC	5 cut(s)	203, 365, 406, 767, 808
SmlI	CTYRAG	2 cut(s)	491, 854
SmoI	CTYRAG	2 cut(s)	491, 854
Sse9I	AATT	3 cut(s)	314, 771, 903
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	67, 88, 151, 458
SspMI	CTAG	3 cut(s)	354, 524, 756
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	6 cut(s)	361, 582, 763, 775, 804, 831
StyI	CCWWGG	3 cut(s)	336, 654, 897
TaaI	ACNGT	3 cut(s)	386, 829, 873
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	1 cut(s)	478
TaqII	GACCGA	1 cut(s)	659
TasI	AATT	3 cut(s)	314, 771, 903
TatI	WGTACW	3 cut(s)	177, 561, 567
TauI	GCSGC	3 cut(s)	69, 154, 460
TfiI	GAWTC	2 cut(s)	198, 881
Tru1I	TTAA	2 cut(s)	372, 539
Tru9I	TTAA	2 cut(s)	372, 539
TscAI	CASTG	2 cut(s)	130, 694
TseFI	GTSAC	3 cut(s)	250, 349, 640
Tsp45I	GTSAC	3 cut(s)	250, 349, 640
TspDTI	ATGAA	4 cut(s)	155, 528, 873, 908
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	130, 694
VpaK11BI	GGWCC	5 cut(s)	203, 365, 406, 767, 808
XmiI	GTMKAC	2 cut(s)	84, 699
XspI	CTAG	3 cut(s)	354, 524, 756
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.