Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010721

Physical Location & Seq

Genomic Coordinates Reverse (-)

94031974 .. 94034619

Gene Structure 2646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCCGAGACTGAACCCAAATCCGTGGCTCCGGAGCTTCTGGAATGGCCCAAGAAGGACAAGCGCCGCCTCCTCCACGCCGTCTACCGCGTCGGCGATCTCGAGCGCACCATCAAGTTTTACACTGAGGCTCTGGGGATGAAGCTGTTGCGGCAGAGGGATATTCCGGAAGAGAAGTACTCCAATGCTTTTCTCGGATTCGGACCCGAAGAAACGAACTTTGTAGTCGAGCTCACTTATAACTATGGAGTCACTTCCTATGATATTGGGACTGGATTTGGACATTTCGCTATCGCTACTCCAGATGTTTACAAATTGGTGGAGGATATTCGTGCCAAGGGTGGGAATGTGACTAGGGAGCCTGGTCCGGTTAAAGGTGGGAACAGTATCATTGCCTTTGTGAAGGACCCTGATGGTTACACGTTTGAGCTTATTCAGAGGCCTTCAACCCCCGAGCCGCTCTGTCAGATTATGCTTCGAGTTGGTGATCTTGAGCGCTCAATCAGCTTCTATGAAAGGGCACTAGGGTTGAAGCTTTTGAGGAGGATTGAGAGACCTGAGTACAAGGCAAATCCTTTCTTGTCTATGTATTGTTACAACATAGCTATCCTGGGATATGCTGAAGAAGACCAGACAACTATTTTGGAGCTGACTTATAACTATGGTGTGACCGAATATACCAAGGGGAATGCGTATGCACAGATTGCTGTTGGCACTGATGATGTATACAAAAGTGCTGAGGTTGTCGACTTGGTTACAAAAGAGCTTGGAGGAAAGATAACTAGACAGCCAGGTCCAATTCCAGGACTCAACACCAAGATTACCTCTTTCCTGGACCCAGATGGTTGGAAAACTGTCCTGGTTGACAATGTGGACTTTCTCAAGGAACTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

298

Amino Acids

33.62

Weight (kDa)

5.18

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	23 - 144	2.3e-26	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase_4	PF13669	26 - 132	1.2e-09	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Glyoxalase	PF00903	156 - 284	2.6e-13	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840
fragaria_vesca	FvH4_3g01920
malus_domestica	MD05G1348100.v1.1
prunus_persica	Prupe.4G019400_v2.0.a1
pyrus_communis	pycom05g31560 pycom10g27300
rosa_chinensis	RchiOBHm_Chr5g0002821
rosa_laevigata	RLG00000031062
rosa_multiflora	Rmu_co8395511.1_g000001 Rmu_sc0013603.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073030
rosa_rugosa	Rorug04G0399900
rosa_samantha	Rh5BG025400 Rh5DG023900
rosa_wichuraiana	Rw5G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	240, 657
AasI	GACNNNNNNGTC	1 cut(s)	792
AccBSI	CCGCTC	1 cut(s)	460
AccI	GTMKAC	3 cut(s)	84, 726, 747
AccII	CGCG	1 cut(s)	90
AccIII	TCCGGA	2 cut(s)	31, 166
AciI	CCGC	4 cut(s)	67, 88, 151, 458
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	179, 563
AfeI	AGCGCT	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	342, 374, 803
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	447, 532
AjnI	CCWGG	6 cut(s)	361, 609, 790, 802, 831, 858
AluBI	AGCT	9 cut(s)	37, 145, 232, 430, 507, 535, 605, 649, 766
AluI	AGCT	9 cut(s)	37, 145, 232, 430, 507, 535, 605, 649, 766
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	2 cut(s)	2, 547
Ama87I	CYCGRG	2 cut(s)	101, 452
Aor13HI	TCCGGA	2 cut(s)	31, 166
Aor51HI	AGCGCT	1 cut(s)	497
AoxI	GGCC	3 cut(s)	3, 47, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
AspLEI	GCGC	3 cut(s)	66, 108, 498
AspS9I	GGNCC	6 cut(s)	48, 203, 365, 406, 794, 835
AsuHPI	GGTGA	1 cut(s)	497
AvaI	CYCGRG	2 cut(s)	101, 452
AvaII	GGWCC	5 cut(s)	203, 365, 406, 794, 835
BaeGI	GKGCMC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	738
BccI	CCATC	3 cut(s)	119, 407, 836
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	6 cut(s)	363, 611, 792, 804, 833, 860
BcoDI	GTCTC	2 cut(s)	2, 547
BfaI	CTAG	3 cut(s)	354, 524, 783
BfmI	CTRYAG	1 cut(s)	890
BfoI	RGCGCY	2 cut(s)	67, 499
BisI	GCNGC	3 cut(s)	67, 152, 458
BlsI	GCNGC	3 cut(s)	68, 153, 459
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	6 cut(s)	363, 611, 792, 804, 833, 860
Bme18I	GGWCC	5 cut(s)	203, 365, 406, 794, 835
BmeT110I	CYCGRG	2 cut(s)	101, 452
BmgT120I	GGNCC	6 cut(s)	48, 203, 365, 406, 794, 835
BmiI	GGNNCC	5 cut(s)	30, 205, 360, 408, 837
BmrFI	CCNGG	6 cut(s)	363, 611, 792, 804, 833, 860
BpiI	GAAGAC	1 cut(s)	633
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	512, 866
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	4 cut(s)	24, 336, 610, 681
BsaWI	WCCGGW	3 cut(s)	31, 166, 367
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 374, 803
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	2 cut(s)	31, 166
BseBI	CCWGG	6 cut(s)	363, 611, 792, 804, 833, 860
BseDI	CCNNGG	4 cut(s)	24, 336, 610, 681
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	3 cut(s)	342, 374, 803
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	3 cut(s)	117, 549, 729
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	2 cut(s)	62, 556
BseSI	GKGCMC	1 cut(s)	523
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	5, 49, 442
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	2 cut(s)	101, 452
BsiSI	CCGG	3 cut(s)	32, 167, 368
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	342, 374, 803
BsmAI	GTCTC	2 cut(s)	2, 547
BsmFI	GGGAC	1 cut(s)	283
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	3 cut(s)	5, 49, 442
Bso31I	GGTCTC	1 cut(s)	547
BsoBI	CYCGRG	2 cut(s)	101, 452
Bsp1286I	GDGCHC	2 cut(s)	234, 523
Bsp13I	TCCGGA	2 cut(s)	31, 166
Bsp143I	GATC	2 cut(s)	97, 487
BspACI	CCGC	4 cut(s)	67, 88, 151, 458
BspANI	GGCC	3 cut(s)	5, 49, 442
BspCNI	CTCAG	3 cut(s)	118, 550, 730
BspEI	TCCGGA	2 cut(s)	31, 166
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	5 cut(s)	30, 205, 360, 408, 837
BspMAI	CTGCAG	1 cut(s)	894
BspTNI	GGTCTC	1 cut(s)	547
BsrBI	CCGCTC	1 cut(s)	460
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	4 cut(s)	24, 336, 610, 681
BssMI	GATC	2 cut(s)	97, 487
BssNAI	GTATAC	1 cut(s)	727
BssT1I	CCWWGG	2 cut(s)	336, 681
Bst1107I	GTATAC	1 cut(s)	727
Bst2UI	CCWGG	6 cut(s)	363, 611, 792, 804, 833, 860
Bst4CI	ACNGT	2 cut(s)	386, 856
Bst6I	CTCTTC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	126, 558, 738
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	90
BstH2I	RGCGCY	2 cut(s)	67, 499
BstHHI	GCGC	3 cut(s)	66, 108, 498
BstKTI	GATC	2 cut(s)	100, 490
BstMAI	GTCTC	2 cut(s)	2, 547
BstMBI	GATC	2 cut(s)	97, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 504, 704
BstNI	CCWGG	6 cut(s)	363, 611, 792, 804, 833, 860
BstSCI	CCNGG	6 cut(s)	361, 609, 790, 802, 831, 858
BstSFI	CTRYAG	1 cut(s)	890
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	633
BstXI	CCANNNNNNTGG	2 cut(s)	25, 846
BstZ17I	GTATAC	1 cut(s)	727
BsuRI	GGCC	3 cut(s)	5, 49, 442
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	123, 714
CfoI	GCGC	3 cut(s)	66, 108, 498
Cfr13I	GGNCC	6 cut(s)	48, 203, 365, 406, 794, 835
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	178, 562
CviQI	GTAC	2 cut(s)	178, 562
DdeI	CTNAG	3 cut(s)	126, 558, 738
DpnI	GATC	2 cut(s)	99, 489
DpnII	GATC	2 cut(s)	97, 487
DrdI	GACNNNNNNGTC	1 cut(s)	792
DseDI	GACNNNNNNGTC	1 cut(s)	792
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	336, 681
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	5 cut(s)	203, 365, 406, 794, 835
Eco47III	AGCGCT	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	101, 452
EcoICRI	GAGCTC	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	6 cut(s)	361, 609, 790, 802, 831, 858
EcoT14I	CCWWGG	2 cut(s)	336, 681
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	336, 681
FaqI	GGGAC	1 cut(s)	283
FblI	GTMKAC	3 cut(s)	84, 726, 747
Fnu4HI	GCNGC	3 cut(s)	67, 152, 458
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	67, 152, 458
FspBI	CTAG	3 cut(s)	354, 524, 783
GlaI	GCGC	3 cut(s)	65, 107, 497
GluI	GCNGC	3 cut(s)	67, 152, 458
GsuI	CTGGAG	1 cut(s)	285
HaeII	RGCGCY	2 cut(s)	67, 499
HaeIII	GGCC	3 cut(s)	5, 49, 442
HapII	CCGG	3 cut(s)	32, 167, 368
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	3 cut(s)	66, 108, 498
Hin6I	GCGC	3 cut(s)	64, 106, 496
HinP1I	GCGC	3 cut(s)	64, 106, 496
HincII	GTYRAC	2 cut(s)	748, 865
HindII	GTYRAC	2 cut(s)	748, 865
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	3 cut(s)	198, 249, 807
HpaII	CCGG	3 cut(s)	32, 167, 368
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	6 cut(s)	85, 310, 727, 748, 865, 874
Hpy188I	TCNGA	4 cut(s)	197, 203, 438, 468
Hpy188III	TCNNGA	6 cut(s)	32, 41, 101, 167, 302, 491
Hpy8I	GTNNAC	6 cut(s)	85, 310, 727, 748, 865, 874
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	49, 397, 453
HpyCH4III	ACNGT	2 cut(s)	386, 856
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	2 cut(s)	698, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 504, 704
HpyF3I	CTNAG	3 cut(s)	126, 558, 738
HpySE526I	ACGT	1 cut(s)	422
HspAI	GCGC	3 cut(s)	64, 106, 496
Kpn2I	TCCGGA	2 cut(s)	31, 166
Kzo9I	GATC	2 cut(s)	97, 487
LmnI	GCTCC	4 cut(s)	34, 34, 358, 646
MaeI	CTAG	3 cut(s)	354, 524, 783
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	6 cut(s)	250, 349, 416, 593, 667, 754
MalI	GATC	2 cut(s)	99, 489
MbiI	CCGCTC	1 cut(s)	460
MboI	GATC	2 cut(s)	97, 487
MboII	GAAGA	4 cut(s)	182, 221, 635, 638
MhlI	GDGCHC	2 cut(s)	234, 523
MluCI	AATT	2 cut(s)	314, 798
MlyI	GAGTC	2 cut(s)	258, 801
MmeI	TCCRAC	1 cut(s)	827
MroI	TCCGGA	2 cut(s)	31, 166
MseI	TTAA	1 cut(s)	372
MspI	CCGG	3 cut(s)	32, 167, 368
MspR9I	CCNGG	6 cut(s)	363, 611, 792, 804, 833, 860
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	6 cut(s)	363, 611, 792, 804, 833, 860
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	151, 504, 704
NdeII	GATC	2 cut(s)	97, 487
NlaIV	GGNNCC	5 cut(s)	30, 205, 360, 408, 837
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	3 cut(s)	250, 349, 667
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	694
PfeI	GAWTC	1 cut(s)	198
PfoI	TCCNGGA	2 cut(s)	802, 831
PkrI	GCNGC	3 cut(s)	68, 153, 459
PleI	GAGTC	2 cut(s)	257, 801
PpsI	GAGTC	2 cut(s)	257, 801
PpuMI	RGGWCCY	1 cut(s)	406
PsiI	TTATAA	2 cut(s)	240, 657
Psp124BI	GAGCTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	6 cut(s)	361, 609, 790, 802, 831, 858
PspGI	CCWGG	6 cut(s)	361, 609, 790, 802, 831, 858
PspN4I	GGNNCC	5 cut(s)	30, 205, 360, 408, 837
PspPI	GGNCC	6 cut(s)	48, 203, 365, 406, 794, 835
PspPPI	RGGWCCY	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	894
RsaI	GTAC	2 cut(s)	179, 563
RsaNI	GTAC	2 cut(s)	178, 562
SacI	GAGCTC	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	746
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	3 cut(s)	67, 152, 458
Sau3AI	GATC	2 cut(s)	97, 487
Sau96I	GGNCC	6 cut(s)	48, 203, 365, 406, 794, 835
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	2 cut(s)	258, 801
ScrFI	CCNGG	6 cut(s)	363, 611, 792, 804, 833, 860
SduI	GDGCHC	2 cut(s)	234, 523
SfcI	CTRYAG	1 cut(s)	890
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	5 cut(s)	203, 365, 406, 794, 835
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	3 cut(s)	101, 491, 881
SmoI	CTYRAG	3 cut(s)	101, 491, 881
Sse9I	AATT	2 cut(s)	314, 798
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	67, 88, 151, 458
SspMI	CTAG	3 cut(s)	354, 524, 783
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	6 cut(s)	361, 609, 790, 802, 831, 858
StyI	CCWWGG	2 cut(s)	336, 681
TaaI	ACNGT	2 cut(s)	386, 856
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	4 cut(s)	102, 228, 478, 747
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	2 cut(s)	314, 798
TatI	WGTACW	2 cut(s)	177, 561
TauI	GCSGC	3 cut(s)	69, 154, 460
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	130, 721
TseFI	GTSAC	3 cut(s)	250, 349, 667
Tsp45I	GTSAC	3 cut(s)	250, 349, 667
TspDTI	ATGAA	2 cut(s)	155, 528
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	2 cut(s)	130, 721
VpaK11BI	GGWCC	5 cut(s)	203, 365, 406, 794, 835
XhoI	CTCGAG	1 cut(s)	101
XmiI	GTMKAC	3 cut(s)	84, 726, 747
XspI	CTAG	3 cut(s)	354, 524, 783
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.