Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010721

Physical Location & Seq

Genomic Coordinates Reverse (-)

56519641 .. 56520530

Gene Structure 890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0399900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTCATGAGCGAAATGATCATCAGGTTGTAATCTACGGATCATGGATTAGTTCATTTACTGCTAGGGTGAAGATAGCCCTAAAACTTAAGGGCATAGATTACGAGTATGTGGAGGAAGATATCACAAACAAGAGTCAGATGATGCTGAACTACAATCCCATCCATAAGAAGGTACCTATTCTTGTTCATCAAGGCAGGCCGATCGTTGAGTCACAAGTCATCCTCGAATATATCGATGAGAATTGGAGCCATGCCCCCAAACTGTTGCCCGAGGATCCTTATGAAAAAGCCAAAATCCGCTTCTGGGCTAAATTCTTTGATGAGAAGATAATACCGGTAATACAGGCGATTTTGAGGTCCAAATCAGGGGAAGAGAGAGAGAATCTGATTCAAGAGTTGAGCGAAGTGATTCAGGTTTTTGAAGAAGGGATGAAGAGAGATTATGGAGAGAAACCACCCTTGTTCAATGGAGATTCGTTGGGGTTTATCGGCATCGTGGTCAGCGCATATGTGTGCAGCTACAAGCCAATTCATGAGGCTTTTGCTACGATTCTTTTAGCCGAAAAGAACCCTGCATTTTTCTCATGGGTGAATGAGCTCCTAGAGCATCCTCTTATAAAGGAGACGCAGCCACCTCATGACAGACTGATAGCTAGGTTCCAGCCTCTTCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

226

Amino Acids

26.24

Weight (kDa)

5.79

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	11 - 81	1.5e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	13 - 82	1.5e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	18 - 81	9.4e-13	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840
fragaria_vesca	FvH4_3g01920
malus_domestica	MD05G1348100.v1.1
prunus_persica	Prupe.4G019400_v2.0.a1
pyrus_communis	pycom05g31560 pycom10g27300
rosa_chinensis	RchiOBHm_Chr5g0002821
rosa_laevigata	RLG00000031062
rosa_multiflora	Rmu_co8395511.1_g000001 Rmu_sc0013603.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073030
rosa_rugosa	Rorug04G0399900
rosa_samantha	Rh5BG025400 Rh5DG023900
rosa_wichuraiana	Rw5G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	3 cut(s)	49, 272, 285
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	172, 307, 369
AflII	CTTAAG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	4 cut(s)	395, 425, 469, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	3 cut(s)	522, 601, 656
AluI	AGCT	3 cut(s)	522, 601, 656
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	3 cut(s)	49, 272, 285
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	519, 631
ApoI	RAATTY	1 cut(s)	314
AsiGI	ACCGGT	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	82, 604
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	531, 643
BccI	CCATC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	3 cut(s)	66, 605, 657
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	520, 632
BlsI	GCNGC	2 cut(s)	521, 633
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	4 cut(s)	177, 251, 279, 662
BmsI	GCATC	3 cut(s)	135, 504, 619
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 307, 369
Bse118I	RCCGGY	1 cut(s)	337
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	4 cut(s)	162, 222, 438, 610
BseLI	CCNNNNNNNGG	3 cut(s)	172, 307, 369
BseXI	GCAGC	2 cut(s)	531, 643
BsgI	GTGCAG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	172, 307, 369
BsmAI	GTCTC	1 cut(s)	620
BsmBI	CGTCTC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	19, 41, 204, 277
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	237
BspHI	TCATGA	3 cut(s)	7, 535, 640
BspLI	GGNNCC	4 cut(s)	177, 251, 279, 662
BspPI	GGATC	3 cut(s)	49, 272, 285
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	19, 41, 204, 277
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	3 cut(s)	369, 431, 675
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	200
BstF5I	GGATG	4 cut(s)	162, 222, 438, 610
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	4 cut(s)	22, 44, 207, 280
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	4 cut(s)	19, 41, 204, 277
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstV1I	GCAGC	2 cut(s)	531, 643
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	162, 222, 438, 610
Cac8I	GCNNGC	1 cut(s)	200
CciI	TCATGA	3 cut(s)	7, 535, 640
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	176
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	6 cut(s)	8, 45, 254, 536, 588, 641
CviQI	GTAC	1 cut(s)	176
DpnI	GATC	4 cut(s)	21, 43, 206, 279
DpnII	GATC	4 cut(s)	19, 41, 204, 277
Eam1104I	CTCTTC	3 cut(s)	369, 431, 675
EarI	CTCTTC	3 cut(s)	369, 431, 675
Ecl136II	GAGCTC	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	603
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
FatI	CATG	6 cut(s)	7, 44, 253, 535, 587, 640
FauNDI	CATATG	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	520, 632
FokI	GGATG	4 cut(s)	149, 209, 445, 597
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	520, 632
FspBI	CTAG	3 cut(s)	66, 605, 657
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	520, 632
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	7 cut(s)	136, 212, 385, 391, 412, 476, 553
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	82, 604
Hpy188I	TCNGA	2 cut(s)	141, 390
Hpy188III	TCNNGA	4 cut(s)	8, 395, 536, 641
HpyAV	CCTTC	2 cut(s)	166, 422
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	519, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
Hsp92II	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
HspAI	GCGC	1 cut(s)	507
KpnI	GGTACC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 41, 204, 277
LmnI	GCTCC	2 cut(s)	249, 606
LpnPI	CCDG	9 cut(s)	11, 184, 292, 332, 351, 354, 401, 588, 677
Lsp1109I	GCAGC	2 cut(s)	531, 643
LweI	GCATC	3 cut(s)	135, 504, 619
MaeI	CTAG	3 cut(s)	66, 605, 657
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	4 cut(s)	21, 43, 206, 279
MboI	GATC	4 cut(s)	19, 41, 204, 277
MboII	GAAGA	7 cut(s)	85, 131, 340, 386, 437, 448, 662
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	3 cut(s)	244, 314, 531
MlyI	GAGTC	2 cut(s)	145, 221
MnlI	CCTC	8 cut(s)	109, 236, 268, 351, 532, 624, 648, 678
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	514
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	607
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	4 cut(s)	19, 41, 204, 277
NlaIII	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
NlaIV	GGNNCC	4 cut(s)	177, 251, 279, 662
NmuCI	GTSAC	1 cut(s)	213
PagI	TCATGA	3 cut(s)	7, 535, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	385, 391, 412, 476, 553
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	521, 633
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	2 cut(s)	144, 220
PpsI	GAGTC	2 cut(s)	144, 220
PsiI	TTATAA	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	603
PspN4I	GGNNCC	4 cut(s)	177, 251, 279, 662
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	520, 632
Sau3AI	GATC	4 cut(s)	19, 41, 204, 277
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	145, 221
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	3 cut(s)	135, 504, 619
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	244, 314, 531
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	3 cut(s)	66, 605, 657
SstI	GAGCTC	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	228, 237
TasI	AATT	3 cut(s)	244, 314, 531
TfiI	GAWTC	5 cut(s)	385, 391, 412, 476, 553
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	2 cut(s)	519, 631
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	5 cut(s)	45, 179, 300, 449, 524
TspGWI	ACGGA	1 cut(s)	54
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	3 cut(s)	66, 605, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.