Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010721

Physical Location & Seq

Genomic Coordinates Reverse (-)

31276445 .. 31278335

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31560.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCGAAGCTGAGGCAAAATCCGTCGCTCCAAACGCCGAGATTTTGGAATGGCCGAAGAAGGACAAGCGCCGGTTCCTCCACGCCGTGTACCGCGTCGGCGATCTCGATCGCACCATCAAGTTTTATACGGAGGCTTTGGGGATGAAGCTGTTGAGGAAGAGGGACATACCGGAGGAGAAATACTCGAATGCGTTTCTGGGATATGGGCCCGAAGATTCTCACTTCGTGGTTGAATTGACGTACAACTACGGAGTTTCGTCTTATGACATCGGCACTGGTTTCGGGCATTTCGCCATCGCTACTCCCGATGTTAAAAAACTGGTGGAAGATGTTCGTGCTAAGGGTGGAAATGTGACGAGGGAGCCTGGCCCTGTGAAAGGCGGGACGAGCATCATAGCCTTTGTGAAGGATCCTGATGGTTACACGTTTGAGATTATCCAGCGGCCCTCCACCCCTGAGCCACTTTGCCAAGTCATGCTCCGCGTTGGTGATCTCGAACGCTCTATCAAGTTCTATGAGAAGGCATTGGGGTTGAAGCTGTTGAGGACGATTGAGAGGCCCGAATACAAGTACACCATAGCCATTTTGGGATATGCAGAAGAAGACCAGACAACAATCTTGGAGTTGACCTATAACTATGGTGTGACCGAATACACTAAAGGAAACGCGTATGCACAGATTGCTATCAGTACTGATGATGTCTATAAAAGTGCCGAGGCTGTCAACTTGGTTGCACAAGAGCTTGGAGGAAAGATAACCAGACAGCCAGGACCAATTCCTGGACTCAACACCAAGATCATCTCTTTTCTCGATCCCGATGGCTGGAAAACTGTCCTGGTTGACAACGAGGATTTCCTGAAGGAACTGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

293

Amino Acids

32.76

Weight (kDa)

5.36

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840 AT1G11840
fragaria_vesca	FvH4_3g01920
malus_domestica	MD05G1348100.v1.1
prunus_persica	Prupe.4G019400_v2.0.a1
pyrus_communis	pycom05g31560 pycom10g27300
rosa_chinensis	RchiOBHm_Chr5g0002821
rosa_laevigata	RLG00000031062
rosa_multiflora	Rmu_co8395511.1_g000001 Rmu_sc0013603.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073030
rosa_rugosa	Rorug04G0399900
rosa_samantha	Rh5BG025400 Rh5DG023900
rosa_wichuraiana	Rw5G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	782
AccII	CGCG	3 cut(s)	96, 486, 671
AciI	CCGC	4 cut(s)	94, 384, 445, 484
AclWI	GGATC	3 cut(s)	407, 420, 809
AcoI	YGGCCR	2 cut(s)	3, 53
AdeI	CACNNNGTG	2 cut(s)	88, 229
AfaI	GTAC	4 cut(s)	92, 245, 575, 694
AfiI	CCNNNNNNNGG	3 cut(s)	380, 782, 825
AflIII	ACRYGT	2 cut(s)	426, 669
AgsI	TTSAA	2 cut(s)	236, 538
AjnI	CCWGG	4 cut(s)	367, 769, 781, 837
AluBI	AGCT	4 cut(s)	11, 151, 541, 745
AluI	AGCT	4 cut(s)	11, 151, 541, 745
AlwI	GGATC	3 cut(s)	407, 420, 809
AoxI	GGCC	6 cut(s)	3, 53, 209, 370, 446, 560
ApaI	GGGCCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	871
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	6 cut(s)	209, 210, 371, 447, 561, 773
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	12
BccI	CCATC	4 cut(s)	125, 305, 413, 815
BceAI	ACGGC	1 cut(s)	71
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	4 cut(s)	369, 771, 783, 839
BfmI	CTRYAG	1 cut(s)	869
BfoI	RGCGCY	1 cut(s)	73
BisI	GCNGC	2 cut(s)	446, 872
BlsI	GCNGC	2 cut(s)	447, 873
BmcAI	AGTACT	1 cut(s)	694
Bme1390I	CCNGG	4 cut(s)	369, 771, 783, 839
Bme18I	GGWCC	1 cut(s)	773
BmgT120I	GGNCC	6 cut(s)	209, 210, 371, 447, 561, 773
BmiI	GGNNCC	4 cut(s)	77, 211, 366, 414
BmrFI	CCNGG	4 cut(s)	369, 771, 783, 839
BmsI	GCATC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	3 cut(s)	12, 342, 459
BsaBI	GATNNNNATC	2 cut(s)	108, 686
BsaJI	CCNNGG	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 782, 825
Bse118I	RCCGGY	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	283, 327
Bse8I	GATNNNNATC	2 cut(s)	108, 686
BseBI	CCWGG	4 cut(s)	369, 771, 783, 839
BseDI	CCNNGG	1 cut(s)	717
BseGI	GGATG	1 cut(s)	150
BseJI	GATNNNNATC	2 cut(s)	108, 686
BseLI	CCNNNNNNNGG	3 cut(s)	380, 782, 825
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	283, 327
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	213
Bsh1236I	CGCG	3 cut(s)	96, 486, 671
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	6 cut(s)	5, 55, 211, 372, 448, 562
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	73, 173
BslFI	GGGAC	2 cut(s)	179, 400
BslI	CCNNNNNNNGG	3 cut(s)	380, 782, 825
BsmFI	GGGAC	2 cut(s)	179, 400
BsmI	GAATGC	1 cut(s)	196
BsnI	GGCC	6 cut(s)	5, 55, 211, 372, 448, 562
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
BspACI	CCGC	4 cut(s)	94, 384, 445, 484
BspANI	GGCC	6 cut(s)	5, 55, 211, 372, 448, 562
BspCNI	CTCAG	2 cut(s)	4, 451
BspFNI	CGCG	3 cut(s)	96, 486, 671
BspLI	GGNNCC	4 cut(s)	77, 211, 366, 414
BspMAI	CTGCAG	1 cut(s)	873
BspPI	GGATC	3 cut(s)	407, 420, 809
BsrFI	RCCGGY	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	283, 327
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	717
BssMI	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
Bst2UI	CCWGG	4 cut(s)	369, 771, 783, 839
Bst4CI	ACNGT	1 cut(s)	835
Bst6I	CTCTTC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstDEI	CTNAG	3 cut(s)	12, 342, 459
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	3 cut(s)	96, 486, 671
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	6 cut(s)	106, 112, 415, 496, 801, 817
BstMBI	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 390, 683
BstNI	CCWGG	4 cut(s)	369, 771, 783, 839
BstSCI	CCNGG	4 cut(s)	367, 769, 781, 837
BstSFI	CTRYAG	1 cut(s)	869
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	3 cut(s)	96, 486, 671
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	6 cut(s)	5, 55, 211, 372, 448, 562
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	276
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	6 cut(s)	209, 210, 371, 447, 561, 773
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	4 cut(s)	91, 244, 574, 693
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	4 cut(s)	91, 244, 574, 693
DdeI	CTNAG	3 cut(s)	12, 342, 459
DpnI	GATC	6 cut(s)	105, 111, 414, 495, 800, 816
DpnII	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
DraIII	CACNNNGTG	2 cut(s)	88, 229
EaeI	YGGCCR	2 cut(s)	3, 53
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	773
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRII	CCWGG	4 cut(s)	367, 769, 781, 837
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	1 cut(s)	481
FaqI	GGGAC	2 cut(s)	179, 400
FatI	CATG	1 cut(s)	477
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	446, 872
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	446, 872
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	446, 872
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	6 cut(s)	5, 55, 211, 372, 448, 562
HapII	CCGG	2 cut(s)	73, 173
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	3 cut(s)	630, 727, 844
HindII	GTYRAC	3 cut(s)	630, 727, 844
HinfI	GANTC	2 cut(s)	218, 786
HpaII	CCGG	2 cut(s)	73, 173
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	5 cut(s)	91, 576, 630, 727, 844
Hpy188III	TCNNGA	7 cut(s)	107, 308, 416, 497, 812, 818, 859
Hpy8I	GTNNAC	5 cut(s)	91, 576, 630, 727, 844
Hpy99I	CGWCG	2 cut(s)	29, 101
HpyAV	CCTTC	4 cut(s)	55, 403, 517, 856
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	2 cut(s)	242, 428
HpyCH4V	TGCA	4 cut(s)	599, 677, 737, 871
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 390, 683
HpyF3I	CTNAG	3 cut(s)	12, 342, 459
HpySE526I	ACGT	2 cut(s)	242, 428
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
LmnI	GCTCC	3 cut(s)	34, 364, 486
LweI	GCATC	1 cut(s)	402
MaeII	ACGT	2 cut(s)	242, 428
MaeIII	GTNAC	3 cut(s)	355, 422, 646
MalI	GATC	6 cut(s)	105, 111, 414, 495, 800, 816
MboI	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
MboII	GAAGA	6 cut(s)	70, 172, 227, 341, 614, 617
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	236, 777
MluI	ACGCGT	1 cut(s)	669
MlyI	GAGTC	1 cut(s)	780
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	445
MspI	CCGG	2 cut(s)	73, 173
MspR9I	CCNGG	4 cut(s)	369, 771, 783, 839
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	4 cut(s)	369, 771, 783, 839
MvnI	CGCG	3 cut(s)	96, 486, 671
MwoI	GCNNNNNNNGC	3 cut(s)	35, 390, 683
NdeII	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	4 cut(s)	77, 211, 366, 414
NmeAIII	GCCGAG	2 cut(s)	64, 742
NmuCI	GTSAC	2 cut(s)	355, 646
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 306
PctI	GAATGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	782
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	2 cut(s)	447, 873
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	1 cut(s)	780
PpsI	GAGTC	1 cut(s)	780
Psp6I	CCWGG	4 cut(s)	367, 769, 781, 837
PspGI	CCWGG	4 cut(s)	367, 769, 781, 837
PspN4I	GGNNCC	4 cut(s)	77, 211, 366, 414
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	6 cut(s)	209, 210, 371, 447, 561, 773
PstI	CTGCAG	1 cut(s)	873
PsuI	RGATCY	1 cut(s)	412
PvuI	CGATCG	1 cut(s)	112
RsaI	GTAC	4 cut(s)	92, 245, 575, 694
RsaNI	GTAC	4 cut(s)	91, 244, 574, 693
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	446, 872
Sau3AI	GATC	6 cut(s)	103, 109, 412, 493, 798, 814
Sau96I	GGNCC	6 cut(s)	209, 210, 371, 447, 561, 773
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	1 cut(s)	780
ScrFI	CCNGG	4 cut(s)	369, 771, 783, 839
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	13, 153, 245, 431, 543, 635, 747
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	773
Sse9I	AATT	2 cut(s)	236, 777
SsiI	CCGC	4 cut(s)	94, 384, 445, 484
StyD4I	CCNGG	4 cut(s)	367, 769, 781, 837
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	2 cut(s)	245, 431
TaqI	TCGA	4 cut(s)	108, 188, 498, 813
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	2 cut(s)	236, 777
TatI	WGTACW	2 cut(s)	573, 692
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	355, 646
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	2 cut(s)	355, 646
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	3 cut(s)	13, 146, 267
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	773
XagI	CCTNNNNNAGG	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	333
ZrmI	AGTACT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.