FvH4_3g02710

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015045
Physical Location & Seq
Forward (+)
1380840 .. 1381773
934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02710.t1

Sequence Viewer

Length: 669 bp
ATGTACTCCTCCCGGTTGCCATTGTCAAGCCCGCAGCCCCAACCCATCAAGCGTCAGCACACTGCCCGGTACTACGCCCATCGGGTCAAAGAAAGCCTCACCACCCGGGTGTCCAAGCTCATATGTACCATTTTCTTGGCTCTCCTTCTTGTTGTTGGTATGGTAACTTTCATACTATGGCTTAGTCTCCGACCTCACCGTCCCAGGTTTCATATCCATCAATTCTCAGTACCAGATTTGAACCAAGCAACGGGGTTCGAAAATGCAGTGATATCGTTCAATGCCAGCGCCCGTAATGCAAACCATAATATTGGCATATATTATGATTCCATGGACGGGGCGGTTTACTATAAGGACCAAAGGATTGGTTTTATCTCATCATTATTGCCGCCATTTTATCAAGGTCCCAAGAACACAACAACCGTAGATGGATCGTTTACAGGTGCCAGCTTGACGGTAAGTAGCCAACGGTGGTCGGAGTTCATGAATGATCGTGCAAAAGGGAACGTGGTGTTTCGCTTAGATTTAACGTCGACGATTAGGTTCAAGATTTCGACCTGGAATAGTAAGCGGCACCGTGTTCACGCCAACTGTGATATCGGCGTAGGCCAAGATGGCCAGATCCTGGCCCCTTATAAAGATAAGAGATGTCCAGTCTATTTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

223

Amino Acids

25.29

Weight (kDa)

10.01

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 96 - 198 6.6e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05220
fragaria_vesca FvH4_3g02710
malus_domestica MD05G1340700.v1.1 MD10G1314200.v1.1
prunus_persica Prupe.4G026800_v2.0.a1
pyrus_communis pycom05g30990 pycom10g26620
rosa_chinensis RchiOBHm_Chr5g0004071
rosa_laevigata RLG00000031201
rosa_multiflora Rmu_sc0000547.1_g000030
rosa_rugosa Rorug04G0409800
rosa_samantha Rh5AG037300 Rh5BG036300 Rh5CG040000 Rh5DG035800
rosa_wichuraiana Rw5G003370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AasI GACNNNNNNGTC 1 cut(s) 198
AccB1I GGYRCC 2 cut(s) 443, 573
AccB7I CCANNNNNTGG 1 cut(s) 625
AccI GTMKAC 1 cut(s) 533
AciI CCGC 4 cut(s) 32, 341, 389, 571
AclWI GGATC 2 cut(s) 439, 616
AcoI YGGCCR 1 cut(s) 616
AfaI GTAC 4 cut(s) 5, 71, 127, 231
AfiI CCNNNNNNNGG 3 cut(s) 250, 336, 625
AgsI TTSAA 3 cut(s) 241, 280, 547
AjnI CCWGG 3 cut(s) 203, 557, 624
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 2 cut(s) 118, 450
AluI AGCT 2 cut(s) 118, 450
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 439, 616
AlwNI CAGNNNCTG 1 cut(s) 625
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 3 cut(s) 607, 616, 627
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 355, 404, 628
AsuC2I CCSGG 4 cut(s) 13, 67, 106, 107
AsuHPI GGTGA 2 cut(s) 91, 188
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 105
AvaII GGWCC 2 cut(s) 355, 404
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 2 cut(s) 443, 573
BbvI GCAGC 1 cut(s) 46
BccI CCATC 5 cut(s) 53, 87, 225, 422, 608
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 3 cut(s) 205, 559, 626
BcnI CCSGG 4 cut(s) 13, 67, 106, 107
BcoDI GTCTC 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 615
BisI GCNGC 3 cut(s) 35, 389, 572
BlsI GCNGC 3 cut(s) 36, 390, 573
Bme1390I CCNGG 7 cut(s) 13, 67, 106, 107, 205, 559, 626
Bme18I GGWCC 2 cut(s) 355, 404
BmeT110I CYCGRG 1 cut(s) 105
BmgT120I GGNCC 3 cut(s) 355, 404, 628
BmiI GGNNCC 4 cut(s) 406, 445, 575, 630
BmrFI CCNGG 7 cut(s) 13, 67, 106, 107, 205, 559, 626
Bpu14I TTCGAA 1 cut(s) 258
BpuMI CCSGG 4 cut(s) 13, 67, 106, 107
BsaJI CCNNGG 3 cut(s) 105, 203, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 336, 625
Bse1I ACTGG 1 cut(s) 653
BseBI CCWGG 3 cut(s) 205, 559, 626
BseDI CCNNGG 3 cut(s) 105, 203, 330
BseLI CCNNNNNNNGG 3 cut(s) 250, 336, 625
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 653
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 3 cut(s) 609, 618, 629
BshNI GGYRCC 2 cut(s) 443, 573
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 3 cut(s) 13, 67, 106
BslFI GGGAC 2 cut(s) 186, 390
BslI CCNNNNNNNGG 3 cut(s) 250, 336, 625
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 186, 390
BsnI GGCC 3 cut(s) 609, 618, 629
BsoBI CYCGRG 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 258
Bsp143I GATC 3 cut(s) 431, 490, 621
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 4 cut(s) 32, 341, 389, 571
BspANI GGCC 3 cut(s) 609, 618, 629
BspCNI CTCAG 1 cut(s) 239
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 4 cut(s) 406, 445, 575, 630
BspPI GGATC 2 cut(s) 439, 616
BspT104I TTCGAA 1 cut(s) 258
BspT107I GGYRCC 2 cut(s) 443, 573
BsrI ACTGG 1 cut(s) 653
BssECI CCNNGG 3 cut(s) 105, 203, 330
BssMI GATC 3 cut(s) 431, 490, 621
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 3 cut(s) 205, 559, 626
Bst4CI ACNGT 6 cut(s) 200, 424, 457, 471, 578, 593
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 32, 286, 448
BstDEI CTNAG 4 cut(s) 182, 226, 520, 666
BstDSI CCRYGG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 3 cut(s) 434, 493, 624
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 3 cut(s) 431, 490, 621
BstMWI GCNNNNNNNGC 2 cut(s) 296, 615
BstNI CCWGG 3 cut(s) 205, 559, 626
BstSCI CCNGG 7 cut(s) 11, 65, 104, 105, 203, 557, 624
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 621
BstXI CCANNNNNNTGG 3 cut(s) 136, 311, 365
BstYI RGATCY 1 cut(s) 621
BsuRI GGCC 3 cut(s) 609, 618, 629
BtgI CCRYGG 1 cut(s) 330
BtsI GCAGTG 2 cut(s) 60, 273
BtsIMutI CAGTG 2 cut(s) 60, 273
Cac8I GCNNGC 3 cut(s) 32, 286, 448
CaiI CAGNNNCTG 1 cut(s) 625
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 355, 404, 628
Cfr9I CCCGGG 1 cut(s) 105
CseI GACGC 1 cut(s) 41
Csp6I GTAC 4 cut(s) 4, 70, 126, 230
CviAII CATG 2 cut(s) 331, 484
CviQI GTAC 4 cut(s) 4, 70, 126, 230
DdeI CTNAG 4 cut(s) 182, 226, 520, 666
DpnI GATC 3 cut(s) 433, 492, 623
DpnII GATC 3 cut(s) 431, 490, 621
DrdI GACNNNNNNGTC 1 cut(s) 198
DseDI GACNNNNNNGTC 1 cut(s) 198
EaeI YGGCCR 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 330
Eco32I GATATC 2 cut(s) 273, 598
Eco47I GGWCC 2 cut(s) 355, 404
Eco88I CYCGRG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 404
EcoRII CCWGG 3 cut(s) 203, 557, 624
EcoRV GATATC 2 cut(s) 273, 598
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 334, 487
FaqI GGGAC 2 cut(s) 186, 390
FatI CATG 2 cut(s) 330, 483
FauI CCCGC 1 cut(s) 39
FauNDI CATATG 1 cut(s) 122
FblI GTMKAC 1 cut(s) 533
Fnu4HI GCNGC 3 cut(s) 35, 389, 572
Fsp4HI GCNGC 3 cut(s) 35, 389, 572
GlaI GCGC 1 cut(s) 289
GluI GCNGC 3 cut(s) 35, 389, 572
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 3 cut(s) 609, 618, 629
HapII CCGG 3 cut(s) 13, 67, 106
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 334, 487
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HinfI GANTC 1 cut(s) 326
HpaII CCGG 3 cut(s) 13, 67, 106
HphI GGTGA 2 cut(s) 91, 188
Hpy166II GTNNAC 4 cut(s) 346, 438, 534, 583
Hpy188I TCNGA 2 cut(s) 191, 478
Hpy188III TCNNGA 2 cut(s) 484, 547
Hpy8I GTNNAC 4 cut(s) 346, 438, 534, 583
Hpy99I CGWCG 2 cut(s) 535, 538
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 6 cut(s) 200, 424, 457, 471, 578, 593
HpyCH4IV ACGT 2 cut(s) 507, 530
HpyCH4V TGCA 3 cut(s) 266, 299, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 615
HpyF3I CTNAG 4 cut(s) 182, 226, 520, 666
HpySE526I ACGT 2 cut(s) 507, 530
Hsp92II CATG 2 cut(s) 334, 487
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 3 cut(s) 431, 490, 621
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 2 cut(s) 507, 530
MaeIII GTNAC 1 cut(s) 163
MalI GATC 3 cut(s) 433, 492, 623
MboI GATC 3 cut(s) 431, 490, 621
MflI RGATCY 1 cut(s) 621
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 618
MmeI TCCRAC 2 cut(s) 214, 456
MnlI CCTC 3 cut(s) 19, 107, 204
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 3 cut(s) 13, 67, 106
MspR9I CCNGG 7 cut(s) 13, 67, 106, 107, 205, 559, 626
MvaI CCWGG 3 cut(s) 205, 559, 626
MwoI GCNNNNNNNGC 2 cut(s) 296, 615
NciI CCSGG 4 cut(s) 13, 67, 106, 107
NcoI CCATGG 1 cut(s) 330
NdeI CATATG 1 cut(s) 122
NdeII GATC 3 cut(s) 431, 490, 621
NlaIII CATG 2 cut(s) 334, 487
NlaIV GGNNCC 4 cut(s) 406, 445, 575, 630
NspV TTCGAA 1 cut(s) 258
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 483
PfeI GAWTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 625
PkrI GCNGC 3 cut(s) 36, 390, 573
PpuMI RGGWCCY 1 cut(s) 404
PsiI TTATAA 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 404
Psp6I CCWGG 3 cut(s) 203, 557, 624
PspGI CCWGG 3 cut(s) 203, 557, 624
PspN4I GGNNCC 4 cut(s) 406, 445, 575, 630
PspPI GGNCC 3 cut(s) 355, 404, 628
PspPPI RGGWCCY 1 cut(s) 404
PstNI CAGNNNCTG 1 cut(s) 625
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 4 cut(s) 5, 71, 127, 231
RsaNI GTAC 4 cut(s) 4, 70, 126, 230
RseI CAYNNNNRTG 1 cut(s) 107
SalI GTCGAC 1 cut(s) 532
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 3 cut(s) 35, 389, 572
Sau3AI GATC 3 cut(s) 431, 490, 621
Sau96I GGNCC 3 cut(s) 355, 404, 628
ScrFI CCNGG 7 cut(s) 13, 67, 106, 107, 205, 559, 626
SfiI GGCCNNNNNGGCC 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 258
SgrDI CGTCGACG 1 cut(s) 532
SinI GGWCC 2 cut(s) 355, 404
SmaI CCCGGG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 221
SsiI CCGC 4 cut(s) 32, 341, 389, 571
SspI AATATT 1 cut(s) 310
StyD4I CCNGG 7 cut(s) 11, 65, 104, 105, 203, 557, 624
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 6 cut(s) 200, 424, 457, 471, 578, 593
TaiI ACGT 2 cut(s) 510, 533
TaqI TCGA 3 cut(s) 258, 533, 554
TasI AATT 1 cut(s) 221
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 391, 574
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 2 cut(s) 67, 273
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 160, 200, 472, 500
TspMI CCCGGG 1 cut(s) 105
TspRI CASTG 2 cut(s) 67, 273
Van91I CCANNNNNTGG 1 cut(s) 625
VpaK11BI GGWCC 2 cut(s) 355, 404
XmaI CCCGGG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.