pycom05g30990

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015045
Physical Location & Seq
Reverse (-)
30889162 .. 30889989
828 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30990.1

Sequence Viewer

Length: 828 bp
ATGTTCTTTTCTTTCTGCATGCAAAAAGACCAAAATGCTTTAACGTCCCTTCACTTCACAACATATATAAAACCAACTACATTAACGAACACTTCTGTCCTGCTCACCAAAACCCTCCTCCCACGCTTTCTTTTCTCCCAGAATATGTTCAACTCCGACCGGCTGCCGATCCAGTACTCCACCACCCCGGAGCAACAACGGCCCATGAAGCGTCAACACACCACCCGGTACTATGCCCACCGCGTCCGCGAAAGCCTCACCACCCGGGTCTCCAAGCTCATATGCACCATTTTCTTAAGCCTCCTCCTCATCCTTGGTATGATAACGTTCATACTATGGCTCAGCCTACGTCCCCACCGCCCTAGATTTCACATCCATGCATTTTCAGTTCCGGGTTTGGGTCAAGAAACCGGGTTCGCAAATGCGGAGATAATGTTCAATGCCACGGCCCGTAACGCGAACCATAATATAGGCATATATTATGATTCGATGGACGCGACGGTGTATTATAGGGACCAACAGATCGGGTCAATCACGGGTTTACTGGACCTGTTTTATCAAGGCCCAAAGAATACGACGATCGTGATGGGGTCGTTTCAGGGGGCCACCTTAACGGTGAATAACCAGCGTTGGATGGAGTTCACGAATGATCGTAAAAAAGGAACGGTCGTGTTTCGTCTTGAATTTACGGCTACGATTAGGTTTAAGATCCACGCGTGGGATAGCAGGCGTCATCGGGTGCACGCCAACTGTGATGTTGATGTGGGCCAGGACGGCTTGATCTTGCCCATTTCTAAGGATAGGAGATGCCCTGTTTATTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

276

Amino Acids

31.92

Weight (kDa)

9.93

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 149 - 251 2.6e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05220
fragaria_vesca FvH4_3g02710
malus_domestica MD05G1340700.v1.1 MD10G1314200.v1.1
prunus_persica Prupe.4G026800_v2.0.a1
pyrus_communis pycom05g30990 pycom10g26620
rosa_chinensis RchiOBHm_Chr5g0004071
rosa_laevigata RLG00000031201
rosa_multiflora Rmu_sc0000547.1_g000030
rosa_rugosa Rorug04G0409800
rosa_samantha Rh5AG037300 Rh5BG036300 Rh5CG040000 Rh5DG035800
rosa_wichuraiana Rw5G003370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 243, 249, 458, 497, 716
AciI CCGC 4 cut(s) 241, 247, 358, 425
AclI AACGTT 1 cut(s) 326
AclWI GGATC 2 cut(s) 163, 703
AcsI RAATTY 1 cut(s) 683
AcyI GRCGYC 1 cut(s) 730
AfaI GTAC 2 cut(s) 176, 230
AfiI CCNNNNNNNGG 2 cut(s) 398, 718
AflII CTTAAG 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 3 cut(s) 151, 439, 683
AjnI CCWGG 1 cut(s) 768
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
Alw21I GWGCWC 1 cut(s) 744
Alw26I GTCTC 1 cut(s) 274
Alw44I GTGCAC 1 cut(s) 740
AlwI GGATC 2 cut(s) 163, 703
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 5 cut(s) 200, 447, 562, 603, 766
ApaLI GTGCAC 1 cut(s) 740
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 683
Asp700I GAANNNNTTC 1 cut(s) 146
AspS9I GGNCC 7 cut(s) 201, 448, 514, 547, 563, 603, 766
AsuC2I CCSGG 6 cut(s) 188, 226, 265, 266, 393, 412
AsuHPI GGTGA 4 cut(s) 97, 250, 628, 814
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 2 cut(s) 514, 547
BaeGI GKGCMC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 744
BbvI GCAGC 1 cut(s) 150
BccI CCATC 3 cut(s) 484, 580, 628
BceAI ACGGC 4 cut(s) 215, 462, 705, 790
BciT130I CCWGG 1 cut(s) 770
BcnI CCSGG 6 cut(s) 188, 226, 265, 266, 393, 412
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 774
BisI GCNGC 1 cut(s) 164
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 7 cut(s) 188, 226, 265, 266, 393, 412, 770
Bme18I GGWCC 2 cut(s) 514, 547
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 7 cut(s) 201, 448, 514, 547, 563, 603, 766
BmiI GGNNCC 2 cut(s) 515, 604
BmrFI CCNGG 7 cut(s) 188, 226, 265, 266, 393, 412, 770
BmsI GCATC 1 cut(s) 797
Bpu1102I GCTNAGC 1 cut(s) 341
BpuMI CCSGG 6 cut(s) 188, 226, 265, 266, 393, 412
BsaHI GRCGYC 1 cut(s) 730
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 4 cut(s) 186, 264, 313, 444
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 718
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 172, 549
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 4 cut(s) 186, 264, 313, 444
BseGI GGATG 3 cut(s) 309, 372, 639
BseLI CCNNNNNNNGG 2 cut(s) 398, 718
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 2 cut(s) 172, 549
BseRI GAGGAG 3 cut(s) 107, 293, 296
BseSI GKGCMC 1 cut(s) 744
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 5 cut(s) 243, 249, 458, 497, 716
Bsh1285I CGRYCG 3 cut(s) 160, 582, 669
BshFI GGCC 5 cut(s) 202, 449, 564, 605, 768
BsiEI CGRYCG 3 cut(s) 160, 582, 669
BsiHKAI GWGCWC 1 cut(s) 744
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 6 cut(s) 160, 188, 226, 265, 392, 411
BslFI GGGAC 3 cut(s) 31, 336, 527
BslI CCNNNNNNNGG 2 cut(s) 398, 718
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 3 cut(s) 31, 336, 527
BsnI GGCC 5 cut(s) 202, 449, 564, 605, 768
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 744
Bsp143I GATC 6 cut(s) 168, 522, 579, 649, 708, 780
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 4 cut(s) 241, 247, 358, 425
BspANI GGCC 5 cut(s) 202, 449, 564, 605, 768
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 5 cut(s) 243, 249, 458, 497, 716
BspLI GGNNCC 2 cut(s) 515, 604
BspPI GGATC 2 cut(s) 163, 703
BspTI CTTAAG 1 cut(s) 295
BspTNI GGTCTC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 159
BsrI ACTGG 2 cut(s) 172, 549
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 4 cut(s) 186, 264, 313, 444
BssMI GATC 6 cut(s) 168, 522, 579, 649, 708, 780
BssNI GRCGYC 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 4 cut(s) 502, 616, 667, 752
BstACI GRCGYC 1 cut(s) 730
BstAFI CTTAAG 1 cut(s) 295
BstC8I GCNNGC 3 cut(s) 20, 728, 744
BstDEI CTNAG 2 cut(s) 341, 795
BstDSI CCRYGG 1 cut(s) 444
BstF5I GGATG 3 cut(s) 309, 372, 639
BstFNI CGCG 5 cut(s) 243, 249, 458, 497, 716
BstKTI GATC 6 cut(s) 171, 525, 582, 652, 711, 783
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 6 cut(s) 168, 522, 579, 649, 708, 780
BstMCI CGRYCG 3 cut(s) 160, 582, 669
BstMWI GCNNNNNNNGC 4 cut(s) 199, 208, 455, 774
BstNI CCWGG 1 cut(s) 770
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 7 cut(s) 186, 224, 263, 264, 391, 410, 768
BstSLI GKGCMC 1 cut(s) 744
BstUI CGCG 5 cut(s) 243, 249, 458, 497, 716
BstV1I GCAGC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 708
BstYI RGATCY 1 cut(s) 708
BsuRI GGCC 5 cut(s) 202, 449, 564, 605, 768
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 309, 372, 639
Cac8I GCNNGC 3 cut(s) 20, 728, 744
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 7 cut(s) 201, 448, 514, 547, 563, 603, 766
Cfr9I CCCGGG 1 cut(s) 264
CseI GACGC 4 cut(s) 200, 232, 503, 719
Csp6I GTAC 2 cut(s) 175, 229
CviAII CATG 3 cut(s) 19, 205, 377
CviQI GTAC 2 cut(s) 175, 229
DdeI CTNAG 2 cut(s) 341, 795
DpnI GATC 6 cut(s) 170, 524, 581, 651, 710, 782
DpnII GATC 6 cut(s) 168, 522, 579, 649, 708, 780
Eco130I CCWWGG 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 2 cut(s) 514, 547
Eco88I CYCGRG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 3 cut(s) 22, 208, 380
FaqI GGGAC 3 cut(s) 31, 336, 527
FatI CATG 3 cut(s) 18, 204, 376
FauNDI CATATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 3 cut(s) 296, 359, 646
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 5 cut(s) 202, 449, 564, 605, 768
HapII CCGG 6 cut(s) 160, 188, 226, 265, 392, 411
HgaI GACGC 4 cut(s) 200, 232, 503, 719
Hin1I GRCGYC 1 cut(s) 730
Hin1II CATG 3 cut(s) 22, 208, 380
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 1 cut(s) 485
HpaII CCGG 6 cut(s) 160, 188, 226, 265, 392, 411
HphI GGTGA 4 cut(s) 97, 250, 628, 814
Hpy166II GTNNAC 4 cut(s) 215, 542, 642, 742
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 4 cut(s) 404, 583, 643, 680
Hpy8I GTNNAC 4 cut(s) 215, 542, 642, 742
Hpy99I CGWCG 2 cut(s) 502, 580
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 4 cut(s) 502, 616, 667, 752
HpyCH4IV ACGT 3 cut(s) 44, 326, 349
HpyCH4V TGCA 5 cut(s) 18, 22, 285, 380, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 208, 455, 774
HpyF3I CTNAG 2 cut(s) 341, 795
HpySE526I ACGT 3 cut(s) 44, 326, 349
Hsp92I GRCGYC 1 cut(s) 730
Hsp92II CATG 3 cut(s) 22, 208, 380
Kzo9I GATC 6 cut(s) 168, 522, 579, 649, 708, 780
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 797
MaeI CTAG 1 cut(s) 363
MaeII ACGT 3 cut(s) 44, 326, 349
MaeIII GTNAC 1 cut(s) 452
MalI GATC 6 cut(s) 170, 524, 581, 651, 710, 782
MboI GATC 6 cut(s) 168, 522, 579, 649, 708, 780
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 744
MluCI AATT 1 cut(s) 683
MluI ACGCGT 1 cut(s) 714
MmeI TCCRAC 2 cut(s) 180, 611
MnlI CCTC 6 cut(s) 125, 128, 266, 311, 314, 317
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 5 cut(s) 41, 83, 296, 611, 705
MslI CAYNNNNRTG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 295
MspI CCGG 6 cut(s) 160, 188, 226, 265, 392, 411
MspR9I CCNGG 7 cut(s) 188, 226, 265, 266, 393, 412, 770
MvaI CCWGG 1 cut(s) 770
MvnI CGCG 5 cut(s) 243, 249, 458, 497, 716
MwoI GCNNNNNNNGC 4 cut(s) 199, 208, 455, 774
NciI CCSGG 6 cut(s) 188, 226, 265, 266, 393, 412
NdeI CATATG 1 cut(s) 281
NdeII GATC 6 cut(s) 168, 522, 579, 649, 708, 780
NlaIII CATG 3 cut(s) 22, 208, 380
NlaIV GGNNCC 2 cut(s) 515, 604
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 22
PaeI GCATGC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 1 cut(s) 165
Ple19I CGATCG 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 768
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 2 cut(s) 515, 604
PspPI GGNCC 7 cut(s) 201, 448, 514, 547, 563, 603, 766
PsuI RGATCY 1 cut(s) 708
PvuI CGATCG 1 cut(s) 582
RsaI GTAC 2 cut(s) 176, 230
RsaNI GTAC 2 cut(s) 175, 229
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 5 cut(s) 41, 83, 296, 611, 705
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 6 cut(s) 168, 522, 579, 649, 708, 780
Sau96I GGNCC 7 cut(s) 201, 448, 514, 547, 563, 603, 766
ScaI AGTACT 1 cut(s) 176
ScrFI CCNGG 7 cut(s) 188, 226, 265, 266, 393, 412, 770
SduI GDGCHC 1 cut(s) 744
SetI ASST 8 cut(s) 47, 279, 329, 352, 552, 611, 704, 827
SfaNI GCATC 1 cut(s) 797
SinI GGWCC 2 cut(s) 514, 547
SmaI CCCGGG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
SphI GCATGC 1 cut(s) 22
Sse9I AATT 1 cut(s) 683
SsiI CCGC 4 cut(s) 241, 247, 358, 425
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 7 cut(s) 186, 224, 263, 264, 391, 410, 768
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 4 cut(s) 502, 616, 667, 752
TaiI ACGT 3 cut(s) 47, 329, 352
TaqI TCGA 1 cut(s) 488
TasI AATT 1 cut(s) 683
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 5 cut(s) 41, 83, 296, 611, 705
Tru9I TTAA 5 cut(s) 41, 83, 296, 611, 705
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 221, 319
TspMI CCCGGG 1 cut(s) 264
Vha464I CTTAAG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 740
VpaK11BI GGWCC 2 cut(s) 514, 547
XapI RAATTY 1 cut(s) 683
XceI RCATGY 1 cut(s) 22
XmaI CCCGGG 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.