Rorug04G0409800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015045
Physical Location & Seq
Reverse (-)
57225107 .. 57226805
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0409800.1

Sequence Viewer

Length: 840 bp
ATGGATTCAATGGGGAAGGGTACAGACAGCTACGGTGTGACCACCGGGTTCGGTGCAACCTCGCACCGGAGAACCAAAAACGGAGAAGCTCTTCAGAGAGAGCTGATCAGATTCTTGAATGCCGGAATCTTTGGCAGCAGCTTAGACTCTAATCACAAATTGCCTCACACCGCAACAAGGGCGGCCATGCTAGTGAGGATCAACACCCTCCTCCAGGGTTACTCAGGCATCAGGTTTGAAATCCTTGAAGCCATTACCAAATTCCTCAACGGCAACATCACCCCATGCCTGCCTCTTCGGGGCACCATCACCGCGTCGGGAGACTTGGTTCCCCTCTCCTACATTGCTGGGCTTTTGATAGGCAGGCCCAACTCAAAGTGCATTGGGCCTAACGGAGAGACCCTAACCCCAGCTGAGGCCTTTAAGTTGGCTGGAATTGAGGGTGATTTCTTTGAGTTGCAACCCAAGGAAGGCCTCGCTTTGGTGAATGGCACTGCTGTTGGGTCTGGAATGGCTTCCGTTGTGCTGTTTGAGGCCAACACTCTAGCTGTTCTCGCCGAAATCATGTCAGCAATTTTCGCTGAAGTTATGCAAGGAAAGCCGGAGTTTACAGACCACTTGACTCACAAACTGAAGCACCACCCTGGCCAGATTGAAGCTGCAGCCATAATGGAGCACATTCTTGACGGAAGCTCCTACATCAAAGAAGCCAAGAGGGTTCCTGAAATGGACCCTCTTCGAAGGCCTAAGCAAGACAGATACAGATATGCTCTAAGAACCTCCCCACAATGGCTAGGCCCCCTGATTGAGGTGATCAGAGCCAATGTTTTAAAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

279

Amino Acids

30.3

Weight (kDa)

8.72

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_aromatic PF00221 4 - 273 1.2e-80 Aromatic amino acid lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05220
fragaria_vesca FvH4_3g02710
malus_domestica MD05G1340700.v1.1 MD10G1314200.v1.1
prunus_persica Prupe.4G026800_v2.0.a1
pyrus_communis pycom05g30990 pycom10g26620
rosa_chinensis RchiOBHm_Chr5g0004071
rosa_laevigata RLG00000031201
rosa_multiflora Rmu_sc0000547.1_g000030
rosa_rugosa Rorug04G0409800
rosa_samantha Rh5AG037300 Rh5BG036300 Rh5CG040000 Rh5DG035800
rosa_wichuraiana Rw5G003370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 1 cut(s) 314
AciI CCGC 3 cut(s) 171, 182, 312
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 2 cut(s) 183, 646
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 3 cut(s) 77, 603, 653
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 9 cut(s) 66, 177, 214, 299, 415, 470, 481, 789, 808
AgsI TTSAA 5 cut(s) 9, 118, 239, 248, 656
AjnI CCWGG 2 cut(s) 213, 643
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 8 cut(s) 30, 89, 103, 141, 413, 548, 659, 693
AluI AGCT 8 cut(s) 30, 89, 103, 141, 413, 548, 659, 693
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 2 cut(s) 315, 392
AlwI GGATC 1 cut(s) 206
AoxI GGCC 9 cut(s) 183, 365, 386, 417, 472, 534, 646, 743, 796
ApeKI GCWGC 4 cut(s) 135, 138, 659, 662
ApoI RAATTY 1 cut(s) 260
Asp700I GAANNNNTTC 2 cut(s) 90, 514
AspS9I GGNCC 4 cut(s) 366, 386, 730, 797
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 5 cut(s) 271, 301, 455, 496, 823
AsuII TTCGAA 1 cut(s) 739
AvaII GGWCC 1 cut(s) 730
BaeGI GKGCMC 1 cut(s) 305
BalI TGGCCA 1 cut(s) 648
BanI GGYRCC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 147, 150, 646, 674
BccI CCATC 1 cut(s) 314
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 2 cut(s) 215, 645
BclI TGATCA 2 cut(s) 105, 813
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 315, 392
BfaI CTAG 3 cut(s) 191, 545, 794
BfmI CTRYAG 1 cut(s) 660
BisI GCNGC 5 cut(s) 136, 139, 183, 660, 663
BlsI GCNGC 5 cut(s) 137, 140, 184, 661, 664
Bme1390I CCNGG 3 cut(s) 46, 215, 645
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 4 cut(s) 366, 386, 730, 797
BmiI GGNNCC 5 cut(s) 304, 330, 720, 732, 799
BmrFI CCNGG 3 cut(s) 46, 215, 645
BmsI GCATC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 197
Bpu10I CCTNAGC 2 cut(s) 414, 747
Bpu14I TTCGAA 1 cut(s) 739
BpuMI CCSGG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 214, 465, 643
BsaWI WCCGGW 1 cut(s) 66
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 677, 707
Bsc4I CCNNNNNNNGG 9 cut(s) 66, 177, 214, 299, 415, 470, 481, 789, 808
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 2 cut(s) 215, 645
BseDI CCNNGG 3 cut(s) 214, 465, 643
BseLI CCNNNNNNNGG 9 cut(s) 66, 177, 214, 299, 415, 470, 481, 789, 808
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 2 cut(s) 237, 405
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 4 cut(s) 147, 150, 646, 674
BseYI CCCAGC 2 cut(s) 347, 409
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 9 cut(s) 185, 367, 388, 419, 474, 536, 648, 745, 798
BshNI GGYRCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 4 cut(s) 45, 67, 123, 602
BslI CCNNNNNNNGG 9 cut(s) 66, 177, 214, 299, 415, 470, 481, 789, 808
BsmAI GTCTC 2 cut(s) 315, 392
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 9 cut(s) 185, 367, 388, 419, 474, 536, 648, 745, 798
Bso31I GGTCTC 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 739
Bsp1286I GDGCHC 2 cut(s) 305, 678
Bsp143I GATC 3 cut(s) 105, 198, 813
BspACI CCGC 3 cut(s) 171, 182, 312
BspANI GGCC 9 cut(s) 185, 367, 388, 419, 474, 536, 648, 745, 798
BspCNI CTCAG 2 cut(s) 236, 406
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 5 cut(s) 304, 330, 720, 732, 799
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 96
BspT104I TTCGAA 1 cut(s) 739
BspT107I GGYRCC 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 342
BssECI CCNNGG 3 cut(s) 214, 465, 643
BssMI GATC 3 cut(s) 105, 198, 813
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 215, 645
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 3 cut(s) 96, 300, 741
BstBI TTCGAA 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 290, 365
BstDEI CTNAG 5 cut(s) 142, 223, 414, 747, 773
BstENI CCTNNNNNAGG 2 cut(s) 212, 806
BstFNI CGCG 1 cut(s) 314
BstKTI GATC 3 cut(s) 108, 201, 816
BstMAI GTCTC 2 cut(s) 315, 392
BstMBI GATC 3 cut(s) 105, 198, 813
BstMWI GCNNNNNNNGC 4 cut(s) 179, 554, 578, 598
BstNI CCWGG 2 cut(s) 215, 645
BstSCI CCNGG 3 cut(s) 44, 213, 643
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 4 cut(s) 147, 150, 646, 674
BsuRI GGCC 9 cut(s) 185, 367, 388, 419, 474, 536, 648, 745, 798
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 290, 365
Cfr13I GGNCC 4 cut(s) 366, 386, 730, 797
CseI GACGC 1 cut(s) 303
Csp6I GTAC 1 cut(s) 21
CviAII CATG 3 cut(s) 187, 285, 565
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 5 cut(s) 142, 223, 414, 747, 773
DpnI GATC 3 cut(s) 107, 200, 815
DpnII GATC 3 cut(s) 105, 198, 813
DraI TTTAAA 1 cut(s) 831
EaeI YGGCCR 2 cut(s) 183, 646
Eam1104I CTCTTC 3 cut(s) 96, 300, 741
EarI CTCTTC 3 cut(s) 96, 300, 741
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 3 cut(s) 419, 474, 745
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 730
Eco57I CTGAAG 3 cut(s) 77, 603, 653
EcoNI CCTNNNNNAGG 2 cut(s) 212, 806
EcoO109I RGGNCCY 1 cut(s) 797
EcoRII CCWGG 2 cut(s) 213, 643
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 190, 288, 568
FaiI YATR 6 cut(s) 188, 286, 566, 590, 668, 768
FatI CATG 3 cut(s) 186, 284, 564
FbaI TGATCA 2 cut(s) 105, 813
Fnu4HI GCNGC 5 cut(s) 136, 139, 183, 660, 663
Fsp4HI GCNGC 5 cut(s) 136, 139, 183, 660, 663
FspBI CTAG 3 cut(s) 191, 545, 794
GluI GCNGC 5 cut(s) 136, 139, 183, 660, 663
GsaI CCCAGC 2 cut(s) 351, 413
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 9 cut(s) 185, 367, 388, 419, 474, 536, 648, 745, 798
HapII CCGG 4 cut(s) 45, 67, 123, 602
HgaI GACGC 1 cut(s) 303
Hin1II CATG 3 cut(s) 190, 288, 568
HinfI GANTC 5 cut(s) 5, 111, 126, 146, 622
HpaII CCGG 4 cut(s) 45, 67, 123, 602
HphI GGTGA 5 cut(s) 271, 301, 455, 496, 823
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 3 cut(s) 96, 110, 818
Hpy188III TCNNGA 5 cut(s) 115, 318, 507, 683, 722
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 1 cut(s) 319
HpyAV CCTTC 3 cut(s) 10, 464, 735
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 5 cut(s) 56, 381, 460, 592, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 554, 578, 598
HpyF3I CTNAG 5 cut(s) 142, 223, 414, 747, 773
Hsp92II CATG 3 cut(s) 190, 288, 568
Ksp22I TGATCA 2 cut(s) 105, 813
Kzo9I GATC 3 cut(s) 105, 198, 813
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 2 cut(s) 673, 698
Lsp1109I GCAGC 4 cut(s) 147, 150, 646, 674
LweI GCATC 1 cut(s) 237
MaeI CTAG 3 cut(s) 191, 545, 794
MaeIII GTNAC 2 cut(s) 37, 218
MalI GATC 3 cut(s) 107, 200, 815
MboI GATC 3 cut(s) 105, 198, 813
MboII GAAGA 3 cut(s) 83, 287, 728
MhlI GDGCHC 2 cut(s) 305, 678
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 4 cut(s) 158, 260, 435, 573
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 2 cut(s) 140, 616
Mox20I TGGCCA 1 cut(s) 648
MroXI GAANNNNTTC 2 cut(s) 90, 514
MscI TGGCCA 1 cut(s) 648
MseI TTAA 2 cut(s) 423, 830
MslI CAYNNNNRTG 1 cut(s) 191
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 4 cut(s) 45, 67, 123, 602
MspR9I CCNGG 3 cut(s) 46, 215, 645
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 215, 645
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 4 cut(s) 179, 554, 578, 598
NciI CCSGG 1 cut(s) 46
NdeII GATC 3 cut(s) 105, 198, 813
NlaIII CATG 3 cut(s) 190, 288, 568
NlaIV GGNNCC 5 cut(s) 304, 330, 720, 732, 799
NmuCI GTSAC 1 cut(s) 37
NspV TTCGAA 1 cut(s) 739
PceI AGGCCT 3 cut(s) 419, 474, 745
PciSI GCTCTTC 1 cut(s) 96
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 90, 514
PfeI GAWTC 3 cut(s) 5, 111, 126
PkrI GCNGC 5 cut(s) 137, 140, 184, 661, 664
PleI GAGTC 2 cut(s) 140, 616
PpsI GAGTC 2 cut(s) 140, 616
Psp6I CCWGG 2 cut(s) 213, 643
PspFI CCCAGC 2 cut(s) 347, 409
PspGI CCWGG 2 cut(s) 213, 643
PspN4I GGNNCC 5 cut(s) 304, 330, 720, 732, 799
PspPI GGNCC 4 cut(s) 366, 386, 730, 797
PstI CTGCAG 1 cut(s) 664
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 423, 830
SatI GCNGC 5 cut(s) 136, 139, 183, 660, 663
Sau3AI GATC 3 cut(s) 105, 198, 813
Sau96I GGNCC 4 cut(s) 366, 386, 730, 797
SchI GAGTC 2 cut(s) 140, 616
ScrFI CCNGG 3 cut(s) 46, 215, 645
SduI GDGCHC 2 cut(s) 305, 678
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 739
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 4 cut(s) 158, 260, 435, 573
SseBI AGGCCT 3 cut(s) 419, 474, 745
SsiI CCGC 3 cut(s) 171, 182, 312
SspMI CTAG 3 cut(s) 191, 545, 794
StuI AGGCCT 3 cut(s) 419, 474, 745
StyD4I CCNGG 3 cut(s) 44, 213, 643
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 739
TasI AATT 4 cut(s) 158, 260, 435, 573
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 3 cut(s) 5, 111, 126
Tru1I TTAA 2 cut(s) 423, 830
Tru9I TTAA 2 cut(s) 423, 830
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 4 cut(s) 135, 138, 659, 662
Tsp45I GTSAC 1 cut(s) 37
TspGWI ACGGA 4 cut(s) 96, 408, 508, 702
TspRI CASTG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 730
XagI CCTNNNNNAGG 2 cut(s) 212, 806
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 2 cut(s) 90, 514
XspI CTAG 3 cut(s) 191, 545, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.