Prupe.4G026800_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015045
Physical Location & Seq
Forward (+)
1250856 .. 1251891
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G026800.1

Sequence Viewer

Length: 681 bp
ATGCACAACTCCCCCGACCGGTTGCCGATCCAGTACCCCACCCCGGAGCCCCAACGCATGAAGCGTCAGCACACCCCCCGGTACTACGCCCACCGGGTCCGTGAAAGCCTCACCACCCGGGTCTCCAAGCTTTTCTGCACCATCTTCTTGGGCCTCCTCCTCATTCTTGGCATGATAGCGTTCATACTTTGGCTTAGTCTACGTCCACACCGCCCAAGATTTCATATCCATGCATTTACGGTTCCGGGCTTGAACCAAGAAACCGGGTTTGAAAATGCTCAGATCACATTCAATGCCACGGCCCGTAACGCCAACCATGATATTGGTATATACTATGATTCAATGGACGGGTCCGCTTATTATAAGGACCAGCGGATTGGGTCAATCTCCGGGTTACTGCCCCCGTTTTATCAAGGGCCTAAGAACACGACGATCGTGGCTGGGTCGTTTACTGGGGCTACCTTAACGGTGAATAGCCAGCGTTGGATGGAGTTCATCAATGATCGTTCGAGAGGAACGGTCGTGTTTCGACTTGAATTTTCGGCTACGATTAGGTTTAGGATTCAGTCGTGGGATAGTAAGCGCCATCGGATGCACGCCAACTGTGATGTCGATGTGGGCCAGGATGGCTTGATCTTGCCCGTTTCTAAAGATAGGAGATGCCCTGTCTATTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

26.08

Weight (kDa)

9.95

Isoelectric Point (pI)

58.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05220
fragaria_vesca FvH4_3g02710
malus_domestica MD05G1340700.v1.1 MD10G1314200.v1.1
prunus_persica Prupe.4G026800_v2.0.a1
pyrus_communis pycom05g30990 pycom10g26620
rosa_chinensis RchiOBHm_Chr5g0004071
rosa_laevigata RLG00000031201
rosa_multiflora Rmu_sc0000547.1_g000030
rosa_rugosa Rorug04G0409800
rosa_samantha Rh5AG037300 Rh5BG036300 Rh5CG040000 Rh5DG035800
rosa_wichuraiana Rw5G003370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccI GTMKAC 1 cut(s) 199
AciI CCGC 3 cut(s) 211, 354, 373
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 536
AfaI GTAC 2 cut(s) 35, 83
AfiI CCNNNNNNNGG 2 cut(s) 18, 43
AgeI ACCGGT 1 cut(s) 18
AgsI TTSAA 5 cut(s) 253, 272, 292, 342, 536
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 22
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 4 cut(s) 151, 300, 416, 619
ApoI RAATTY 1 cut(s) 536
AsiGI ACCGGT 1 cut(s) 18
AspLEI GCGC 1 cut(s) 585
AspS9I GGNCC 7 cut(s) 97, 151, 301, 351, 367, 416, 619
AsuC2I CCSGG 8 cut(s) 44, 79, 95, 118, 119, 246, 265, 391
AsuHPI GGTGA 3 cut(s) 103, 481, 667
AvaI CYCGRG 1 cut(s) 117
AvaII GGWCC 3 cut(s) 97, 351, 367
BanII GRGCYC 1 cut(s) 51
BccI CCATC 4 cut(s) 149, 481, 594, 620
BceAI ACGGC 1 cut(s) 315
BciT130I CCWGG 1 cut(s) 623
BcnI CCSGG 8 cut(s) 44, 79, 95, 118, 119, 246, 265, 391
BcoDI GTCTC 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 586
BglI GCCNNNNNGGC 1 cut(s) 627
Bme1390I CCNGG 9 cut(s) 44, 79, 95, 118, 119, 246, 265, 391, 623
Bme18I GGWCC 3 cut(s) 97, 351, 367
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 7 cut(s) 97, 151, 301, 351, 367, 416, 619
BmiI GGNNCC 4 cut(s) 48, 98, 243, 352
BmrFI CCNGG 9 cut(s) 44, 79, 95, 118, 119, 246, 265, 391, 623
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 2 cut(s) 582, 650
BmuI ACTGGG 1 cut(s) 462
BpuMI CCSGG 8 cut(s) 44, 79, 95, 118, 119, 246, 265, 391
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 4 cut(s) 42, 77, 117, 297
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 43
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 31, 457
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 4 cut(s) 42, 77, 117, 297
BseGI GGATG 3 cut(s) 492, 597, 631
BseLI CCNNNNNNNGG 2 cut(s) 18, 43
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 31, 457
BseRI GAGGAG 2 cut(s) 146, 149
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 121
Bsh1285I CGRYCG 3 cut(s) 19, 435, 522
BshFI GGCC 4 cut(s) 153, 302, 418, 621
BshTI ACCGGT 1 cut(s) 18
BsiEI CGRYCG 3 cut(s) 19, 435, 522
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 8 cut(s) 19, 44, 79, 94, 118, 245, 264, 390
BslI CCNNNNNNNGG 2 cut(s) 18, 43
BsmAI GTCTC 1 cut(s) 127
BsnI GGCC 4 cut(s) 153, 302, 418, 621
Bso31I GGTCTC 1 cut(s) 127
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 5 cut(s) 27, 282, 432, 502, 633
BspACI CCGC 3 cut(s) 211, 354, 373
BspANI GGCC 4 cut(s) 153, 302, 418, 621
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 4 cut(s) 48, 98, 243, 352
BspPI GGATC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 18
BsrI ACTGG 2 cut(s) 31, 457
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 4 cut(s) 42, 77, 117, 297
BssMI GATC 5 cut(s) 27, 282, 432, 502, 633
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 4 cut(s) 241, 469, 520, 605
BstC8I GCNNGC 2 cut(s) 479, 597
BstDEI CTNAG 3 cut(s) 194, 279, 420
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 3 cut(s) 492, 597, 631
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 1 cut(s) 585
BstKTI GATC 5 cut(s) 30, 285, 435, 505, 636
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 5 cut(s) 27, 282, 432, 502, 633
BstMCI CGRYCG 3 cut(s) 19, 435, 522
BstMWI GCNNNNNNNGC 2 cut(s) 308, 627
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 9 cut(s) 42, 77, 93, 116, 117, 244, 263, 389, 621
BstXI CCANNNNNNTGG 3 cut(s) 148, 323, 377
BsuRI GGCC 4 cut(s) 153, 302, 418, 621
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 492, 597, 631
Cac8I GCNNGC 2 cut(s) 479, 597
CfoI GCGC 1 cut(s) 585
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 7 cut(s) 97, 151, 301, 351, 367, 416, 619
Cfr9I CCCGGG 1 cut(s) 117
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 34, 82
CspAI ACCGGT 1 cut(s) 18
CviAII CATG 4 cut(s) 58, 172, 230, 317
CviQI GTAC 2 cut(s) 34, 82
DdeI CTNAG 3 cut(s) 194, 279, 420
DpnI GATC 5 cut(s) 29, 284, 434, 504, 635
DpnII GATC 5 cut(s) 27, 282, 432, 502, 633
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 127
Eco47I GGWCC 3 cut(s) 97, 351, 367
Eco88I CYCGRG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 621
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 4 cut(s) 61, 175, 233, 320
FatI CATG 4 cut(s) 57, 171, 229, 316
FblI GTMKAC 1 cut(s) 199
FokI GGATG 3 cut(s) 499, 604, 638
FriOI GRGCYC 1 cut(s) 51
GlaI GCGC 1 cut(s) 584
GsaI CCCAGC 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 586
HaeIII GGCC 4 cut(s) 153, 302, 418, 621
HapII CCGG 8 cut(s) 19, 44, 79, 94, 118, 245, 264, 390
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 585
Hin1II CATG 4 cut(s) 61, 175, 233, 320
Hin6I GCGC 1 cut(s) 583
HinP1I GCGC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 338, 562
HpaII CCGG 8 cut(s) 19, 44, 79, 94, 118, 245, 264, 390
HphI GGTGA 3 cut(s) 103, 481, 667
Hpy166II GTNNAC 3 cut(s) 200, 206, 450
Hpy188I TCNGA 2 cut(s) 282, 591
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 3 cut(s) 200, 206, 450
Hpy99I CGWCG 1 cut(s) 433
HpyCH4III ACNGT 4 cut(s) 241, 469, 520, 605
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 4, 138, 233, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 627
HpyF3I CTNAG 3 cut(s) 194, 279, 420
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 4 cut(s) 61, 175, 233, 320
HspAI GCGC 1 cut(s) 583
Kzo9I GATC 5 cut(s) 27, 282, 432, 502, 633
LmnI GCTCC 1 cut(s) 46
LweI GCATC 2 cut(s) 582, 650
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 305, 393
MalI GATC 5 cut(s) 29, 284, 434, 504, 635
MboI GATC 5 cut(s) 27, 282, 432, 502, 633
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 5 cut(s) 119, 164, 167, 170, 506
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 1 cut(s) 464
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 8 cut(s) 19, 44, 79, 94, 118, 245, 264, 390
MspR9I CCNGG 9 cut(s) 44, 79, 95, 118, 119, 246, 265, 391, 623
MvaI CCWGG 1 cut(s) 623
MwoI GCNNNNNNNGC 2 cut(s) 308, 627
NciI CCSGG 8 cut(s) 44, 79, 95, 118, 119, 246, 265, 391
NdeII GATC 5 cut(s) 27, 282, 432, 502, 633
NlaIII CATG 4 cut(s) 61, 175, 233, 320
NlaIV GGNNCC 4 cut(s) 48, 98, 243, 352
NsiI ATGCAT 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 2 cut(s) 338, 562
PinAI ACCGGT 1 cut(s) 18
Ple19I CGATCG 1 cut(s) 435
PsiI TTATAA 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 621
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 4 cut(s) 48, 98, 243, 352
PspPI GGNCC 7 cut(s) 97, 151, 301, 351, 367, 416, 619
PvuI CGATCG 1 cut(s) 435
RsaI GTAC 2 cut(s) 35, 83
RsaNI GTAC 2 cut(s) 34, 82
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 464
Sau3AI GATC 5 cut(s) 27, 282, 432, 502, 633
Sau96I GGNCC 7 cut(s) 97, 151, 301, 351, 367, 416, 619
ScrFI CCNGG 9 cut(s) 44, 79, 95, 118, 119, 246, 265, 391, 623
SduI GDGCHC 1 cut(s) 51
SetI ASST 5 cut(s) 132, 205, 464, 557, 680
SfaNI GCATC 2 cut(s) 582, 650
SinI GGWCC 3 cut(s) 97, 351, 367
SmaI CCCGGG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 1 cut(s) 536
SsiI CCGC 3 cut(s) 211, 354, 373
StyD4I CCNGG 9 cut(s) 42, 77, 93, 116, 117, 244, 263, 389, 621
TaaI ACNGT 4 cut(s) 241, 469, 520, 605
TaiI ACGT 1 cut(s) 205
TaqI TCGA 3 cut(s) 509, 529, 612
TasI AATT 1 cut(s) 536
TfiI GAWTC 2 cut(s) 338, 562
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TspDTI ATGAA 4 cut(s) 74, 172, 212, 484
TspGWI ACGGA 1 cut(s) 89
TspMI CCCGGG 1 cut(s) 117
VpaK11BI GGWCC 3 cut(s) 97, 351, 367
XapI RAATTY 1 cut(s) 536
XmaI CCCGGG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 199
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.