Rh5BG036300

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015045
Physical Location & Seq
Forward (+)
2553675 .. 2555033
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG036300.1

Sequence Viewer

Length: 669 bp
ATGTACTCCTCCCGGTTGCCGGTGTCAACCCCGCAGCCCCAACCCATTAAGCGTCAGCACACTGCCCGGTACTACGCCCACCGCGTCAAAGAAAGCCTCACCACCCGGCTGTCCAAGTTTATATGTACCATTTTCTTGGCTCTCCTTCTTGTTGTTGGTATACTAACTTTCATACTATGGCTTAGTTTCCGTCCTCACCGGCCCAGATTTCATATCCATCAATTTTCAGTACCCGGTTTGAACCAAGCAACGGGGTTCGAAAATGCAGAGATAACGTTCAATGCCTCCGCCCGTAATGCGAACCATAATATCGGAATATATTATGATCAGATGGACGGGGCAGTTTACTATAAGGACCAACGGATTGGATTAATCTCATCATTGTTGCCACCATTTTATCAAGGGCCGAAGAACACAACAATCGTACATGGATCGTTTACAGGGGCAAGCTTGACGGTAAGTAGCCAGCGTTGGACGGAGTTCATGAATGATCGTGCAAAAGGGACGGTTGTGTTTCGCCTAGATTTAACGTCGGCGATTAGGTTTAAGATTTCCACCTGGACTAGTAAGCGCCACCGTGTTCACGCCAACTGTGATGTTGATGTAGGCCAGGATGGCCTGATCCTGGCCATTTCTAAAGATAAAAGATGTCCTGTCTATTTCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

222

Amino Acids

25.32

Weight (kDa)

10.05

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 96 - 199 8.3e-13 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05220
fragaria_vesca FvH4_3g02710
malus_domestica MD05G1340700.v1.1 MD10G1314200.v1.1
prunus_persica Prupe.4G026800_v2.0.a1
pyrus_communis pycom05g30990 pycom10g26620
rosa_chinensis RchiOBHm_Chr5g0004071
rosa_laevigata RLG00000031201
rosa_multiflora Rmu_sc0000547.1_g000030
rosa_rugosa Rorug04G0409800
rosa_samantha Rh5AG037300 Rh5BG036300 Rh5CG040000 Rh5DG035800
rosa_wichuraiana Rw5G003370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AccII CGCG 1 cut(s) 84
AciI CCGC 3 cut(s) 32, 82, 288
AclI AACGTT 1 cut(s) 275
AclWI GGATC 2 cut(s) 439, 616
AcoI YGGCCR 1 cut(s) 627
AfaI GTAC 5 cut(s) 5, 71, 127, 231, 426
AfiI CCNNNNNNNGG 3 cut(s) 19, 250, 625
AgsI TTSAA 2 cut(s) 241, 280
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 3 cut(s) 557, 609, 624
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
AlwI GGATC 2 cut(s) 439, 616
AoxI GGCC 5 cut(s) 200, 404, 607, 616, 627
ApeKI GCWGC 1 cut(s) 34
AseI ATTAAT 1 cut(s) 371
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 3 cut(s) 201, 355, 404
AsuC2I CCSGG 4 cut(s) 13, 67, 106, 234
AsuHPI GGTGA 2 cut(s) 91, 188
AsuII TTCGAA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 629
BbvI GCAGC 1 cut(s) 46
BccI CCATC 3 cut(s) 225, 325, 608
BciT130I CCWGG 3 cut(s) 559, 611, 626
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 4 cut(s) 13, 67, 106, 234
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 2 cut(s) 521, 564
BfoI RGCGCY 1 cut(s) 574
BglI GCCNNNNNGGC 1 cut(s) 615
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 7 cut(s) 13, 67, 106, 234, 559, 611, 626
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 3 cut(s) 201, 355, 404
BmrFI CCNGG 7 cut(s) 13, 67, 106, 234, 559, 611, 626
Bpu14I TTCGAA 1 cut(s) 258
BpuMI CCSGG 4 cut(s) 13, 67, 106, 234
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 250, 625
Bse118I RCCGGY 2 cut(s) 19, 198
BseBI CCWGG 3 cut(s) 559, 611, 626
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 3 cut(s) 19, 250, 625
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 5 cut(s) 202, 406, 609, 618, 629
BsiSI CCGG 6 cut(s) 13, 20, 67, 106, 199, 234
BslFI GGGAC 1 cut(s) 517
BslI CCNNNNNNNGG 3 cut(s) 19, 250, 625
BsmFI GGGAC 1 cut(s) 517
BsnI GGCC 5 cut(s) 202, 406, 609, 618, 629
Bsp119I TTCGAA 1 cut(s) 258
Bsp143I GATC 4 cut(s) 325, 431, 490, 621
BspACI CCGC 3 cut(s) 32, 82, 288
BspANI GGCC 5 cut(s) 202, 406, 609, 618, 629
BspFNI CGCG 1 cut(s) 84
BspHI TCATGA 1 cut(s) 483
BspPI GGATC 2 cut(s) 439, 616
BspT104I TTCGAA 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 19, 198
BssAI RCCGGY 2 cut(s) 19, 198
BssMI GATC 4 cut(s) 325, 431, 490, 621
BssNAI GTATAC 1 cut(s) 161
Bst1107I GTATAC 1 cut(s) 161
Bst2UI CCWGG 3 cut(s) 559, 611, 626
Bst4CI ACNGT 4 cut(s) 457, 508, 578, 593
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 448, 467
BstDEI CTNAG 2 cut(s) 182, 666
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 574
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 4 cut(s) 328, 434, 493, 624
BstMBI GATC 4 cut(s) 325, 431, 490, 621
BstMWI GCNNNNNNNGC 2 cut(s) 296, 615
BstNI CCWGG 3 cut(s) 559, 611, 626
BstSCI CCNGG 7 cut(s) 11, 65, 104, 232, 557, 609, 624
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 46
BstXI CCANNNNNNTGG 2 cut(s) 136, 365
BstZ17I GTATAC 1 cut(s) 161
BsuRI GGCC 5 cut(s) 202, 406, 609, 618, 629
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 448, 467
CciI TCATGA 1 cut(s) 483
CfoI GCGC 1 cut(s) 573
Cfr10I RCCGGY 2 cut(s) 19, 198
Cfr13I GGNCC 3 cut(s) 201, 355, 404
CseI GACGC 2 cut(s) 41, 73
Csp6I GTAC 5 cut(s) 4, 70, 126, 230, 425
CviAII CATG 2 cut(s) 428, 484
CviQI GTAC 5 cut(s) 4, 70, 126, 230, 425
DdeI CTNAG 2 cut(s) 182, 666
DpnI GATC 4 cut(s) 327, 433, 492, 623
DpnII GATC 4 cut(s) 325, 431, 490, 621
EaeI YGGCCR 1 cut(s) 627
EciI GGCGGA 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 355
EcoRII CCWGG 3 cut(s) 557, 609, 624
FaeI CATG 2 cut(s) 431, 487
FaqI GGGAC 1 cut(s) 517
FatI CATG 2 cut(s) 427, 483
FauI CCCGC 1 cut(s) 39
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 2 cut(s) 521, 564
GlaI GCGC 1 cut(s) 572
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 574
HaeIII GGCC 5 cut(s) 202, 406, 609, 618, 629
HapII CCGG 6 cut(s) 13, 20, 67, 106, 199, 234
HgaI GACGC 2 cut(s) 41, 73
HhaI GCGC 1 cut(s) 573
Hin1II CATG 2 cut(s) 431, 487
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 448
HpaII CCGG 6 cut(s) 13, 20, 67, 106, 199, 234
HphI GGTGA 2 cut(s) 91, 188
Hpy166II GTNNAC 5 cut(s) 27, 161, 346, 438, 583
Hpy188I TCNGA 2 cut(s) 314, 330
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 5 cut(s) 27, 161, 346, 438, 583
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 1 cut(s) 155
HpyCH4III ACNGT 4 cut(s) 457, 508, 578, 593
HpyCH4IV ACGT 2 cut(s) 275, 530
HpyCH4V TGCA 2 cut(s) 266, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 615
HpyF3I CTNAG 2 cut(s) 182, 666
HpySE526I ACGT 2 cut(s) 275, 530
Hsp92II CATG 2 cut(s) 431, 487
HspAI GCGC 1 cut(s) 571
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 325, 431, 490, 621
Lsp1109I GCAGC 1 cut(s) 46
MaeI CTAG 2 cut(s) 521, 564
MaeII ACGT 2 cut(s) 275, 530
MalI GATC 4 cut(s) 327, 433, 492, 623
MboI GATC 4 cut(s) 325, 431, 490, 621
MboII GAAGA 1 cut(s) 421
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 1 cut(s) 221
MluNI TGGCCA 1 cut(s) 629
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 4 cut(s) 19, 107, 204, 295
Mox20I TGGCCA 1 cut(s) 629
MscI TGGCCA 1 cut(s) 629
MseI TTAA 4 cut(s) 48, 371, 527, 546
Msp20I TGGCCA 1 cut(s) 629
MspI CCGG 6 cut(s) 13, 20, 67, 106, 199, 234
MspR9I CCNGG 7 cut(s) 13, 67, 106, 234, 559, 611, 626
MvaI CCWGG 3 cut(s) 559, 611, 626
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 296, 615
NciI CCSGG 4 cut(s) 13, 67, 106, 234
NdeII GATC 4 cut(s) 325, 431, 490, 621
NlaIII CATG 2 cut(s) 431, 487
NspV TTCGAA 1 cut(s) 258
PagI TCATGA 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PkrI GCNGC 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 275
Psp6I CCWGG 3 cut(s) 557, 609, 624
PspGI CCWGG 3 cut(s) 557, 609, 624
PspPI GGNCC 3 cut(s) 201, 355, 404
RsaI GTAC 5 cut(s) 5, 71, 127, 231, 426
RsaNI GTAC 5 cut(s) 4, 70, 126, 230, 425
SaqAI TTAA 4 cut(s) 48, 371, 527, 546
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 4 cut(s) 325, 431, 490, 621
Sau96I GGNCC 3 cut(s) 201, 355, 404
ScrFI CCNGG 7 cut(s) 13, 67, 106, 234, 559, 611, 626
SetI ASST 5 cut(s) 278, 452, 533, 545, 560
SfiI GGCCNNNNNGGCC 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 1 cut(s) 355
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 1 cut(s) 221
SsiI CCGC 3 cut(s) 32, 82, 288
SspMI CTAG 2 cut(s) 521, 564
StyD4I CCNGG 7 cut(s) 11, 65, 104, 232, 557, 609, 624
TaaI ACNGT 4 cut(s) 457, 508, 578, 593
TaiI ACGT 2 cut(s) 278, 533
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 221
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 4 cut(s) 48, 371, 527, 546
Tru9I TTAA 4 cut(s) 48, 371, 527, 546
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 34
TspDTI ATGAA 4 cut(s) 160, 200, 472, 500
TspGWI ACGGA 3 cut(s) 179, 376, 491
TspRI CASTG 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 355
VspI ATTAAT 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 2 cut(s) 521, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.