Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012961

Physical Location & Seq

Genomic Coordinates Forward (+)

1561438 .. 1562904

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCACAAGCTATGGCTTCAATGGCTGGTCTACATGGTTCCTCCCAGGCTGTGTTGGAAGGCAGCAGCCTCCATCTAAGTGGCTCATCTCGCTTGAACATAGTTGGTAACAACACCAGGCTAGCCGTGACCAGAACCGGGTTCGCCATTAGAGCCCAGCAGGTGTCTGCTGAGCCCGAGACTAGCCGTCGCGCTATGCTCGGTCTTGTGGCAGTTGGTTTGGCCTCTGGATCTTTCGTTCAAGCTGTGCTTGCTGAGGCTAAACCCATCAAAGTCGGCCCTCCTCCCCCGCCATCCGGTGGACTGCCTGGAACTGAGAACTCGGATGAGGCAAGAGACCTTGATCTGCCATTGAACAAGAGGTTCTTCTTGCAGCCACTGACTCCGGCTGAGGCTGCCGCGAGGGCAAAGGAGTCGGCCAAGGAAATCCTTGGCGTCAAGTCATTCATAGACAAGAAGGCATGGCCATTTGTCCAGAACGATCTTCGTCTCAAATCTGAGTACCTCCGATATGATCTCAAAACAGTCATCTCTGCCAAGCCCAAGGAAGAGAAGGAGTCACTCAAGACTCTCACCGGAAAGCTCTTCCAGGACCTTGCCAATTTGGACCATGCAGCCAAGATCAAAAGCACCCCACAAGCAGAGAAGTACTATGCCGAAGCTGTATCTACCCTTAATGATGTTGTTAAAAAGCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

234

Amino Acids

24.94

Weight (kDa)

9.52

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 233	1.9e-76	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05180 AT4G05180
fragaria_vesca	FvH4_3g02920
malus_domestica	MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica	Prupe.4G029300_v2.0.a1
pyrus_communis	pycom05g30770 pycom10g26290
rosa_chinensis	RchiOBHm_Chr5g0004501
rosa_laevigata	RLG00000031234
rosa_multiflora	Rmu_sc0000485.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071020
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana	Rw5G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
Acc36I	ACCTGC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	2 cut(s)	192, 401
AciI	CCGC	2 cut(s)	290, 399
AclWI	GGATC	1 cut(s)	238
AcoI	YGGCCR	2 cut(s)	417, 464
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	2 cut(s)	503, 650
AfiI	CCNNNNNNNGG	3 cut(s)	138, 296, 299
AgsI	TTSAA	4 cut(s)	21, 97, 242, 355
AhdI	GACNNNNNGTC	1 cut(s)	186
AjnI	CCWGG	4 cut(s)	45, 116, 307, 588
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	5 cut(s)	11, 245, 583, 662, 694
AluI	AGCT	5 cut(s)	11, 245, 583, 662, 694
Alw26I	GTCTC	3 cut(s)	173, 330, 494
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	4 cut(s)	222, 277, 417, 464
ApeKI	GCWGC	5 cut(s)	63, 66, 373, 395, 614
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	278, 592, 607
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	565
AsuNHI	GCTAGC	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	592, 607
BalI	TGGCCA	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	157, 177
BbvCI	CCTCAGC	2 cut(s)	255, 390
BbvI	GCAGC	5 cut(s)	75, 78, 382, 385, 626
BccI	CCATC	3 cut(s)	81, 275, 301
BceAI	ACGGC	2 cut(s)	110, 171
BcgI	CGANNNNNNTGC	2 cut(s)	396, 430
BciT130I	CCWGG	4 cut(s)	47, 118, 309, 590
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	173, 330, 494
BfaI	CTAG	2 cut(s)	122, 183
BfuAI	ACCTGC	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	6 cut(s)	64, 67, 374, 396, 399, 615
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	6 cut(s)	65, 68, 375, 397, 400, 616
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	5 cut(s)	47, 118, 139, 309, 590
Bme18I	GGWCC	2 cut(s)	592, 607
BmeRI	GACNNNNNGTC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	278, 592, 607
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	5 cut(s)	47, 118, 139, 309, 590
BmtI	GCTAGC	1 cut(s)	125
Bpu10I	CCTNAGC	2 cut(s)	255, 390
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	548
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	45, 420, 430, 543
BsaWI	WCCGGW	2 cut(s)	296, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 296, 299
BseBI	CCWGG	4 cut(s)	47, 118, 309, 590
BseDI	CCNNGG	4 cut(s)	45, 420, 430, 543
BseGI	GGATG	2 cut(s)	293, 331
BseLI	CCNNNNNNNGG	3 cut(s)	138, 296, 299
BseMII	CTCAG	5 cut(s)	162, 246, 306, 381, 489
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	5 cut(s)	75, 78, 382, 385, 626
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	192, 401
BshFI	GGCC	4 cut(s)	224, 279, 419, 466
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	4 cut(s)	138, 297, 386, 576
BslI	CCNNNNNNNGG	3 cut(s)	138, 296, 299
BsmAI	GTCTC	3 cut(s)	173, 330, 494
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	4 cut(s)	224, 279, 419, 466
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	157, 177
Bsp143I	GATC	5 cut(s)	230, 343, 481, 514, 621
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	2 cut(s)	290, 399
BspANI	GGCC	4 cut(s)	224, 279, 419, 466
BspCNI	CTCAG	5 cut(s)	163, 247, 307, 382, 490
BspFNI	CGCG	2 cut(s)	192, 401
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	330
BssECI	CCNNGG	4 cut(s)	45, 420, 430, 543
BssMI	GATC	5 cut(s)	230, 343, 481, 514, 621
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	3 cut(s)	420, 430, 543
Bst2UI	CCWGG	4 cut(s)	47, 118, 309, 590
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	2 cut(s)	543, 590
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	123, 252
BstDEI	CTNAG	6 cut(s)	77, 171, 255, 315, 390, 498
BstF5I	GGATG	2 cut(s)	293, 331
BstFNI	CGCG	2 cut(s)	192, 401
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	233, 346, 484, 517, 624
BstMAI	GTCTC	3 cut(s)	173, 330, 494
BstMBI	GATC	5 cut(s)	230, 343, 481, 514, 621
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 90, 152, 251, 395, 404
BstNI	CCWGG	4 cut(s)	47, 118, 309, 590
BstSCI	CCNGG	5 cut(s)	45, 116, 137, 307, 588
BstUI	CGCG	2 cut(s)	192, 401
BstV1I	GCAGC	5 cut(s)	75, 78, 382, 385, 626
BstX2I	RGATCY	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	224, 279, 419, 466
BtsCI	GGATG	2 cut(s)	293, 331
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	123, 252
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	278, 592, 607
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	502, 649
CviAII	CATG	3 cut(s)	35, 462, 611
CviQI	GTAC	2 cut(s)	502, 649
DdeI	CTNAG	6 cut(s)	77, 171, 255, 315, 390, 498
DpnI	GATC	5 cut(s)	232, 345, 483, 516, 623
DpnII	GATC	5 cut(s)	230, 343, 481, 514, 621
DriI	GACNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	2 cut(s)	417, 464
Eam1104I	CTCTTC	2 cut(s)	543, 590
Eam1105I	GACNNNNNGTC	1 cut(s)	186
EarI	CTCTTC	2 cut(s)	543, 590
Eco130I	CCWWGG	3 cut(s)	420, 430, 543
Eco24I	GRGCYC	2 cut(s)	157, 177
Eco31I	GGTCTC	1 cut(s)	330
Eco47I	GGWCC	2 cut(s)	592, 607
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	4 cut(s)	45, 116, 307, 588
EcoT14I	CCWWGG	3 cut(s)	420, 430, 543
EcoT38I	GRGCYC	2 cut(s)	157, 177
ErhI	CCWWGG	3 cut(s)	420, 430, 543
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	3 cut(s)	38, 465, 614
FaiI	YATR	9 cut(s)	14, 36, 101, 197, 449, 463, 513, 612, 654
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 350, 382
FatI	CATG	3 cut(s)	34, 461, 610
FauI	CCCGC	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	6 cut(s)	64, 67, 374, 396, 399, 615
FokI	GGATG	2 cut(s)	280, 338
FriOI	GRGCYC	2 cut(s)	157, 177
Fsp4HI	GCNGC	6 cut(s)	64, 67, 374, 396, 399, 615
FspBI	CTAG	2 cut(s)	122, 183
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	6 cut(s)	64, 67, 374, 396, 399, 615
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	4 cut(s)	224, 279, 419, 466
HapII	CCGG	4 cut(s)	138, 297, 386, 576
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	3 cut(s)	38, 465, 614
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	382, 413, 557, 568
HpaII	CCGG	4 cut(s)	138, 297, 386, 576
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	32, 302
Hpy188I	TCNGA	3 cut(s)	325, 499, 509
Hpy188III	TCNNGA	3 cut(s)	228, 475, 565
Hpy8I	GTNNAC	2 cut(s)	32, 302
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	53, 451, 547
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4V	TGCA	2 cut(s)	373, 614
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 90, 152, 251, 395, 404
HpyF3I	CTNAG	6 cut(s)	77, 171, 255, 315, 390, 498
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	3 cut(s)	38, 465, 614
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	230, 343, 481, 514, 621
LguI	GCTCTTC	1 cut(s)	590
Lsp1109I	GCAGC	5 cut(s)	75, 78, 382, 385, 626
MaeI	CTAG	2 cut(s)	122, 183
MaeIII	GTNAC	3 cut(s)	107, 127, 558
MalI	GATC	5 cut(s)	232, 345, 483, 516, 623
MboI	GATC	5 cut(s)	230, 343, 481, 514, 621
MboII	GAAGA	4 cut(s)	358, 476, 560, 577
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	157, 177
MlsI	TGGCCA	1 cut(s)	466
MluCI	AATT	1 cut(s)	601
MluNI	TGGCCA	1 cut(s)	466
MlyI	GAGTC	4 cut(s)	376, 422, 562, 566
MmeI	TCCRAC	1 cut(s)	36
Mox20I	TGGCCA	1 cut(s)	466
MscI	TGGCCA	1 cut(s)	466
MseI	TTAA	3 cut(s)	675, 687, 700
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	466
MspI	CCGG	4 cut(s)	138, 297, 386, 576
MspR9I	CCNGG	5 cut(s)	47, 118, 139, 309, 590
MvaI	CCWGG	4 cut(s)	47, 118, 309, 590
MvnI	CGCG	2 cut(s)	192, 401
MwoI	GCNNNNNNNGC	6 cut(s)	23, 90, 152, 251, 395, 404
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	5 cut(s)	230, 343, 481, 514, 621
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	38, 465, 614
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	127, 558
PaqCI	CACCTGC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	590
PflMI	CCANNNNNTGG	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	6 cut(s)	65, 68, 375, 397, 400, 616
PleI	GAGTC	4 cut(s)	376, 421, 562, 565
PpsI	GAGTC	4 cut(s)	376, 421, 562, 565
PpuMI	RGGWCCY	1 cut(s)	592
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	4 cut(s)	45, 116, 307, 588
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	4 cut(s)	45, 116, 307, 588
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	3 cut(s)	278, 592, 607
PspPPI	RGGWCCY	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	2 cut(s)	503, 650
RsaNI	GTAC	2 cut(s)	502, 649
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	675, 687, 700
SatI	GCNGC	6 cut(s)	64, 67, 374, 396, 399, 615
Sau3AI	GATC	5 cut(s)	230, 343, 481, 514, 621
Sau96I	GGNCC	3 cut(s)	278, 592, 607
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	4 cut(s)	376, 422, 562, 566
ScrFI	CCNGG	5 cut(s)	47, 118, 139, 309, 590
SduI	GDGCHC	2 cut(s)	157, 177
SinI	GGWCC	2 cut(s)	592, 607
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	601
SsiI	CCGC	2 cut(s)	290, 399
SspMI	CTAG	2 cut(s)	122, 183
StyD4I	CCNGG	5 cut(s)	45, 116, 137, 307, 588
StyI	CCWWGG	3 cut(s)	420, 430, 543
TaaI	ACNGT	1 cut(s)	526
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	1 cut(s)	601
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	401
Tru1I	TTAA	3 cut(s)	675, 687, 700
Tru9I	TTAA	3 cut(s)	675, 687, 700
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	127, 558
TseI	GCWGC	5 cut(s)	63, 66, 373, 395, 614
Tsp45I	GTSAC	2 cut(s)	127, 558
TspDTI	ATGAA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	592, 607
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	2 cut(s)	122, 183
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.