Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012961

Physical Location & Seq

Genomic Coordinates Forward (+)

1365077 .. 1366413

Gene Structure 1337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCACAAGCTATTGCTTCAATGTCTGGCCTACATGGTTCATCCCAGGCTGTGTTGGAAGGCAGCCTTCATCTAAGTGGCTCATCACGCTTGAACATAGCCAGCAGCACCAACAGGCTAGCTGTGACCAAGTCCGGGTTCGCCATAAGAGCCCAGCAAGCGCCTGCAGAGCCTGAAACTAGCCGTAGAGCCATGCTTGGTCTTGTGGCCGCTGGTTTGGCCTCTGGTTCTTTTGTCCAAGCTGTGCTTGCAGAGGCTAAGCCCATCAAAGTTGGTCCACCTCCACCCCCTTCCGGCGGATTACCTGGAACTCTAAACTCGGATGAGGCAAGAGACCTTGACCTGCCATTGAAGGAGAGGTTCTTCATCCAACCCTTGACCCCAGCTCAGGCTGCACAGAGGGCAAAGGAGTCAGCCAAGGAAATTGTTGCTGTGAAGGAGTACATAGACAAGAAGGCTTGGCCTTATGTCCAGAACGATCTTCGTCTCAGGGCCTCGTATCTCCGATATGACCTCAAGACTGTGATTTCTGCCAAATCCAAAACAGAGAAGGAGCCACTCAAGGAACTCACTGGAAAGCTCTTCAAGGACATTGACAATTTGGACCATGCAGCCAAGATCAAGAGCACCCCAGAAGCAGAGAAGTACTATGCGGCGACTGTATCTTCCCTGAATGATGTTATTGCAAAGCTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

233

Amino Acids

24.79

Weight (kDa)

9.47

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05180 AT4G05180
fragaria_vesca	FvH4_3g02920
malus_domestica	MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica	Prupe.4G029300_v2.0.a1
pyrus_communis	pycom05g30770 pycom10g26290
rosa_chinensis	RchiOBHm_Chr5g0004501
rosa_laevigata	RLG00000031234
rosa_multiflora	Rmu_sc0000485.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071020
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana	Rw5G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AciI	CCGC	3 cut(s)	210, 297, 653
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	2 cut(s)	443, 647
AfiI	CCNNNNNNNGG	4 cut(s)	135, 293, 296, 388
AgsI	TTSAA	4 cut(s)	21, 94, 352, 586
AjnI	CCWGG	2 cut(s)	45, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	6 cut(s)	11, 122, 242, 386, 580, 691
AluI	AGCT	6 cut(s)	11, 122, 242, 386, 580, 691
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	2 cut(s)	327, 491
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	5 cut(s)	28, 207, 219, 461, 492
ApeKI	GCWGC	4 cut(s)	63, 105, 392, 611
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	3 cut(s)	275, 492, 604
AsuC2I	CCSGG	1 cut(s)	136
AsuNHI	GCTAGC	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	275, 604
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	75, 117, 379, 623
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	2 cut(s)	47, 306
BcnI	CCSGG	1 cut(s)	136
BcoDI	GTCTC	2 cut(s)	327, 491
BfaI	CTAG	2 cut(s)	119, 180
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	6 cut(s)	64, 106, 210, 393, 612, 654
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	6 cut(s)	65, 107, 211, 394, 613, 655
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	3 cut(s)	47, 136, 306
Bme18I	GGWCC	2 cut(s)	275, 604
BmgT120I	GGNCC	3 cut(s)	275, 492, 604
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	47, 136, 306
BmtI	GCTAGC	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	500, 545
BpuMI	CCSGG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	45, 417
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 293, 296, 388
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	47, 306
BseDI	CCNNGG	2 cut(s)	45, 417
BseGI	GGATG	3 cut(s)	41, 328, 366
BseLI	CCNNNNNNNGG	4 cut(s)	135, 293, 296, 388
BseMII	CTCAG	2 cut(s)	401, 502
BseNI	ACTGG	1 cut(s)	577
BseXI	GCAGC	4 cut(s)	75, 117, 379, 623
BseYI	CCCAGC	2 cut(s)	153, 382
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	5 cut(s)	30, 209, 221, 463, 494
BsiHKAI	GWGCWC	1 cut(s)	629
BsiSI	CCGG	2 cut(s)	135, 294
BslI	CCNNNNNNNGG	4 cut(s)	135, 293, 296, 388
BsmAI	GTCTC	2 cut(s)	327, 491
BsmBI	CGTCTC	1 cut(s)	491
BsnI	GGCC	5 cut(s)	30, 209, 221, 463, 494
Bso31I	GGTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	154, 629
Bsp143I	GATC	2 cut(s)	478, 618
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	210, 297, 653
BspANI	GGCC	5 cut(s)	30, 209, 221, 463, 494
BspCNI	CTCAG	2 cut(s)	400, 501
BspLI	GGNNCC	1 cut(s)	555
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	2 cut(s)	45, 417
BssMI	GATC	2 cut(s)	478, 618
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	47, 306
Bst4CI	ACNGT	2 cut(s)	523, 661
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	5 cut(s)	103, 120, 159, 165, 249
BstDEI	CTNAG	4 cut(s)	74, 258, 387, 488
BstF5I	GGATG	3 cut(s)	41, 328, 366
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	481, 621
BstMAI	GTCTC	2 cut(s)	327, 491
BstMBI	GATC	2 cut(s)	478, 618
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 149, 158, 169, 218, 248, 392, 401
BstNI	CCWGG	2 cut(s)	47, 306
BstSCI	CCNGG	3 cut(s)	45, 134, 304
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	75, 117, 379, 623
BsuRI	GGCC	5 cut(s)	30, 209, 221, 463, 494
BtsCI	GGATG	3 cut(s)	41, 328, 366
BtsIMutI	CAGTG	1 cut(s)	570
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	5 cut(s)	103, 120, 159, 165, 249
CaiI	CAGNNNCTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	275, 492, 604
Csp6I	GTAC	2 cut(s)	442, 646
CviAII	CATG	3 cut(s)	35, 193, 608
CviQI	GTAC	2 cut(s)	442, 646
DdeI	CTNAG	4 cut(s)	74, 258, 387, 488
DpnI	GATC	2 cut(s)	480, 620
DpnII	GATC	2 cut(s)	478, 618
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	275, 604
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	45, 304
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	3 cut(s)	38, 196, 611
FaiI	YATR	9 cut(s)	36, 98, 146, 194, 446, 468, 510, 609, 651
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 231, 263
FatI	CATG	3 cut(s)	34, 192, 607
Fnu4HI	GCNGC	6 cut(s)	64, 106, 210, 393, 612, 654
FokI	GGATG	3 cut(s)	28, 335, 353
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	6 cut(s)	64, 106, 210, 393, 612, 654
FspBI	CTAG	2 cut(s)	119, 180
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	6 cut(s)	64, 106, 210, 393, 612, 654
GsaI	CCCAGC	2 cut(s)	157, 386
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	5 cut(s)	30, 209, 221, 463, 494
HapII	CCGG	2 cut(s)	135, 294
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	38, 196, 611
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	2 cut(s)	135, 294
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	322, 506
Hpy188III	TCNNGA	3 cut(s)	472, 517, 622
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	7 cut(s)	53, 77, 300, 346, 430, 448, 544
HpyCH4III	ACNGT	2 cut(s)	523, 661
HpyCH4V	TGCA	5 cut(s)	167, 251, 395, 611, 686
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 149, 158, 169, 218, 248, 392, 401
HpyF3I	CTNAG	4 cut(s)	74, 258, 387, 488
Hsp92II	CATG	3 cut(s)	38, 196, 611
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	478, 618
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	4 cut(s)	75, 117, 379, 623
MaeI	CTAG	2 cut(s)	119, 180
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	480, 620
MboI	GATC	2 cut(s)	478, 618
MboII	GAAGA	4 cut(s)	355, 473, 574, 657
MhlI	GDGCHC	2 cut(s)	154, 629
MluCI	AATT	2 cut(s)	423, 598
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	36, 394
MnlI	CCTC	8 cut(s)	232, 247, 291, 319, 351, 393, 505, 524
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	2 cut(s)	135, 294
MspR9I	CCNGG	3 cut(s)	47, 136, 306
MvaI	CCWGG	2 cut(s)	47, 306
MwoI	GCNNNNNNNGC	8 cut(s)	87, 149, 158, 169, 218, 248, 392, 401
NciI	CCSGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	478, 618
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	3 cut(s)	38, 196, 611
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	587
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	6 cut(s)	65, 107, 211, 394, 613, 655
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	45, 304
PspFI	CCCAGC	2 cut(s)	153, 382
PspGI	CCWGG	2 cut(s)	45, 304
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	3 cut(s)	275, 492, 604
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	130
RsaI	GTAC	2 cut(s)	443, 647
RsaNI	GTAC	2 cut(s)	442, 646
RseI	CAYNNNNRTG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	587
SatI	GCNGC	6 cut(s)	64, 106, 210, 393, 612, 654
Sau3AI	GATC	2 cut(s)	478, 618
Sau96I	GGNCC	3 cut(s)	275, 492, 604
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	47, 136, 306
SduI	GDGCHC	2 cut(s)	154, 629
SfcI	CTRYAG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	275, 604
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	515, 560
SmoI	CTYRAG	2 cut(s)	515, 560
Sse9I	AATT	2 cut(s)	423, 598
SsiI	CCGC	3 cut(s)	210, 297, 653
SspMI	CTAG	2 cut(s)	119, 180
StyD4I	CCNGG	3 cut(s)	45, 134, 304
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	523, 661
TasI	AATT	2 cut(s)	423, 598
TatI	WGTACW	2 cut(s)	441, 645
TauI	GCSGC	2 cut(s)	212, 656
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	63, 105, 392, 611
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	3 cut(s)	30, 59, 355
TspRI	CASTG	1 cut(s)	577
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	275, 604
XspI	CTAG	2 cut(s)	119, 180
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.