Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012961

Physical Location & Seq

Genomic Coordinates Reverse (-)

39644952 .. 39646445

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1311700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCACAAGCTATGGCTTCAATGGCTGGCCTGCACGGTTCCTCCCAGGCAGTTTTGGAGGGCAGCCTCCACCTAAGCAGCTCATCACGCTTGAACGCGGTCAGCAGCACCGGCAGGCTAGCCGTGGCGAGGTCCGGGCTCACCATTAGAGCCCAGCAAGTGCCTTCAGAGCCCGAAACTAGTCGTAGGGCCGTGCTTGGTCTCGTCGCAGTTGGTTTGGCCTCCGGGTCATTTGTTCAAGCTGTGCTTGCCGAGGCTAAGCCCATCAAAATCGGTCCTCCTCCACCTCCCTCCGGTGGATTGCCTGGAACCCTAAACTCGGATGAGGCAAGAGACCTTGACCTGCCGTTGAAGGAGAGGTTCTTCCTCCAACCACTCACTCCGGCTCAGGCTGCCGCGCGGGCGAAGGAGTCAGCCAAGGAAATTGTAGCTGTCAAGGAGTTCATTGACAAAAAGGCATGGCCCTACGTCCAGAACGATCTTCGTCTCAGATCCTCGTATCTCCGTTATGACCTCAAGACCGTCATTTCTGCCAAACCTAAACCCGAGAAGGAGCCCCTCAAGGAACTCGCTGGAAAGCTCTTCAAAGACATTGATGGCTTGGACCATGCAGCAAAGATCAAGAGCACCCCGGAAGCAGAGAAGTACTACGCCGCGACCGTATCTTCCCTCAATGATGTTCTTGCAAAGCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

233

Amino Acids

24.66

Weight (kDa)

9.52

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 232	5.7e-78	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05180 AT4G05180
fragaria_vesca	FvH4_3g02920
malus_domestica	MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica	Prupe.4G029300_v2.0.a1
pyrus_communis	pycom05g30770 pycom10g26290
rosa_chinensis	RchiOBHm_Chr5g0004501
rosa_laevigata	RLG00000031234
rosa_multiflora	Rmu_sc0000485.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071020
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana	Rw5G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	351
AccII	CGCG	4 cut(s)	98, 398, 400, 656
AciI	CCGC	4 cut(s)	98, 396, 400, 654
AclWI	GGATC	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	4 cut(s)	129, 293, 296, 319
AgsI	TTSAA	5 cut(s)	21, 94, 239, 352, 586
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	45, 304
AluBI	AGCT	6 cut(s)	11, 81, 242, 431, 580, 691
AluI	AGCT	6 cut(s)	11, 81, 242, 431, 580, 691
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	3 cut(s)	206, 327, 491
AlwI	GGATC	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	4 cut(s)	28, 189, 219, 461
ApeKI	GCWGC	5 cut(s)	63, 78, 105, 392, 611
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	5 cut(s)	132, 189, 275, 462, 604
AsuC2I	CCSGG	3 cut(s)	136, 226, 632
AsuHPI	GGTGA	1 cut(s)	133
AsuNHI	GCTAGC	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	545
AvaII	GGWCC	3 cut(s)	132, 275, 604
BanII	GRGCYC	4 cut(s)	141, 154, 174, 558
Bbv12I	GWGCWC	1 cut(s)	629
BbvI	GCAGC	5 cut(s)	75, 90, 117, 379, 623
BccI	CCATC	2 cut(s)	272, 590
BceAI	ACGGC	3 cut(s)	107, 176, 331
BciT130I	CCWGG	2 cut(s)	47, 306
BcnI	CCSGG	3 cut(s)	136, 226, 632
BcoDI	GTCTC	3 cut(s)	206, 327, 491
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	119, 180
BfuAI	ACCTGC	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	7 cut(s)	64, 79, 106, 393, 396, 612, 654
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	7 cut(s)	65, 80, 107, 394, 397, 613, 655
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	5 cut(s)	47, 136, 226, 306, 632
Bme18I	GGWCC	3 cut(s)	132, 275, 604
BmeT110I	CYCGRG	1 cut(s)	545
BmgT120I	GGNCC	5 cut(s)	132, 189, 275, 462, 604
BmiI	GGNNCC	3 cut(s)	40, 310, 555
BmrFI	CCNGG	5 cut(s)	47, 136, 226, 306, 632
BmtI	GCTAGC	1 cut(s)	122
Bpu10I	CCTNAGC	2 cut(s)	74, 387
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	2 cut(s)	500, 545
BpuMI	CCSGG	3 cut(s)	136, 226, 632
BsaI	GGTCTC	2 cut(s)	206, 327
BsaJI	CCNNGG	5 cut(s)	45, 123, 252, 417, 630
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 293, 296, 319
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	47, 306
BseDI	CCNNGG	5 cut(s)	45, 123, 252, 417, 630
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	4 cut(s)	129, 293, 296, 319
BseMII	CTCAG	2 cut(s)	401, 502
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	5 cut(s)	75, 90, 117, 379, 623
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	17
Bsh1236I	CGCG	4 cut(s)	98, 398, 400, 656
Bsh1285I	CGRYCG	1 cut(s)	660
BshFI	GGCC	4 cut(s)	30, 191, 221, 463
BsiEI	CGRYCG	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	629
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	6 cut(s)	111, 135, 225, 294, 383, 632
BslI	CCNNNNNNNGG	4 cut(s)	129, 293, 296, 319
BsmAI	GTCTC	3 cut(s)	206, 327, 491
BsmBI	CGTCTC	1 cut(s)	491
BsnI	GGCC	4 cut(s)	30, 191, 221, 463
Bso31I	GGTCTC	2 cut(s)	206, 327
BsoBI	CYCGRG	1 cut(s)	545
Bsp1286I	GDGCHC	5 cut(s)	141, 154, 174, 558, 629
Bsp143I	GATC	3 cut(s)	478, 491, 618
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	4 cut(s)	98, 396, 400, 654
BspANI	GGCC	4 cut(s)	30, 191, 221, 463
BspCNI	CTCAG	2 cut(s)	400, 501
BspFNI	CGCG	4 cut(s)	98, 398, 400, 656
BspLI	GGNNCC	3 cut(s)	40, 310, 555
BspMI	ACCTGC	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	587
BspTNI	GGTCTC	2 cut(s)	206, 327
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	5 cut(s)	45, 123, 252, 417, 630
BssMI	GATC	3 cut(s)	478, 491, 618
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	47, 306
Bst4CI	ACNGT	3 cut(s)	38, 523, 661
Bst6I	CTCTTC	1 cut(s)	587
BstC8I	GCNNGC	6 cut(s)	28, 32, 116, 120, 249, 402
BstDEI	CTNAG	4 cut(s)	74, 258, 387, 488
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	4 cut(s)	98, 398, 400, 656
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	3 cut(s)	481, 494, 621
BstMAI	GTCTC	3 cut(s)	206, 327, 491
BstMBI	GATC	3 cut(s)	478, 491, 618
BstMCI	CGRYCG	1 cut(s)	660
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 87, 111, 169, 248, 392, 401
BstNI	CCWGG	2 cut(s)	47, 306
BstSCI	CCNGG	5 cut(s)	45, 134, 224, 304, 630
BstUI	CGCG	4 cut(s)	98, 398, 400, 656
BstV1I	GCAGC	5 cut(s)	75, 90, 117, 379, 623
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
BsuRI	GGCC	4 cut(s)	30, 191, 221, 463
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	6 cut(s)	28, 32, 116, 120, 249, 402
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	5 cut(s)	132, 189, 275, 462, 604
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	2 cut(s)	459, 608
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	4 cut(s)	74, 258, 387, 488
DpnI	GATC	3 cut(s)	480, 493, 620
DpnII	GATC	3 cut(s)	478, 491, 618
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	4 cut(s)	141, 154, 174, 558
Eco31I	GGTCTC	2 cut(s)	206, 327
Eco47I	GGWCC	3 cut(s)	132, 275, 604
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	45, 304
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	4 cut(s)	141, 154, 174, 558
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	2 cut(s)	462, 611
FaiI	YATR	4 cut(s)	14, 460, 510, 609
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	2 cut(s)	458, 607
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	64, 79, 106, 393, 396, 612, 654
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	4 cut(s)	141, 154, 174, 558
Fsp4HI	GCNGC	7 cut(s)	64, 79, 106, 393, 396, 612, 654
FspBI	CTAG	2 cut(s)	119, 180
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	7 cut(s)	64, 79, 106, 393, 396, 612, 654
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	4 cut(s)	30, 191, 221, 463
HapII	CCGG	6 cut(s)	111, 135, 225, 294, 383, 632
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	462, 611
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	6 cut(s)	111, 135, 225, 294, 383, 632
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	169, 322, 491
Hpy188III	TCNNGA	3 cut(s)	472, 517, 622
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	174, 346, 400, 544
HpyCH4III	ACNGT	3 cut(s)	38, 523, 661
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	34, 611, 686
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 87, 111, 169, 248, 392, 401
HpyF3I	CTNAG	4 cut(s)	74, 258, 387, 488
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	2 cut(s)	462, 611
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	478, 491, 618
LguI	GCTCTTC	1 cut(s)	587
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	5 cut(s)	75, 90, 117, 379, 623
MaeI	CTAG	2 cut(s)	119, 180
MaeII	ACGT	1 cut(s)	468
MalI	GATC	3 cut(s)	480, 493, 620
MboI	GATC	3 cut(s)	478, 491, 618
MboII	GAAGA	4 cut(s)	355, 473, 574, 657
MflI	RGATCY	1 cut(s)	491
MhlI	GDGCHC	5 cut(s)	141, 154, 174, 558, 629
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	394
MseI	TTAA	1 cut(s)	697
MspI	CCGG	6 cut(s)	111, 135, 225, 294, 383, 632
MspR9I	CCNGG	5 cut(s)	47, 136, 226, 306, 632
MvaI	CCWGG	2 cut(s)	47, 306
MvnI	CGCG	4 cut(s)	98, 398, 400, 656
MwoI	GCNNNNNNNGC	7 cut(s)	23, 87, 111, 169, 248, 392, 401
NciI	CCSGG	3 cut(s)	136, 226, 632
NdeII	GATC	3 cut(s)	478, 491, 618
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	2 cut(s)	462, 611
NlaIV	GGNNCC	3 cut(s)	40, 310, 555
NmeAIII	GCCGAG	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	2 cut(s)	474, 657
PkrI	GCNGC	7 cut(s)	65, 80, 107, 394, 397, 613, 655
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	45, 304
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	45, 304
PspN4I	GGNNCC	3 cut(s)	40, 310, 555
PspPI	GGNCC	5 cut(s)	132, 189, 275, 462, 604
PsuI	RGATCY	1 cut(s)	491
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SapI	GCTCTTC	1 cut(s)	587
SaqAI	TTAA	1 cut(s)	697
SatI	GCNGC	7 cut(s)	64, 79, 106, 393, 396, 612, 654
Sau3AI	GATC	3 cut(s)	478, 491, 618
Sau96I	GGNCC	5 cut(s)	132, 189, 275, 462, 604
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	5 cut(s)	47, 136, 226, 306, 632
SduI	GDGCHC	5 cut(s)	141, 154, 174, 558, 629
SinI	GGWCC	3 cut(s)	132, 275, 604
SmlI	CTYRAG	2 cut(s)	515, 560
SmoI	CTYRAG	2 cut(s)	515, 560
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	4 cut(s)	98, 396, 400, 654
SspMI	CTAG	2 cut(s)	119, 180
StyD4I	CCNGG	5 cut(s)	45, 134, 224, 304, 630
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	38, 523, 661
TaiI	ACGT	1 cut(s)	471
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	645
TauI	GCSGC	2 cut(s)	398, 656
Tru1I	TTAA	1 cut(s)	697
Tru9I	TTAA	1 cut(s)	697
TseI	GCWGC	5 cut(s)	63, 78, 105, 392, 611
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	494
VpaK11BI	GGWCC	3 cut(s)	132, 275, 604
XspI	CTAG	2 cut(s)	119, 180
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.