Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012961

Physical Location & Seq

Genomic Coordinates Forward (+)

2966751 .. 2968815

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG039900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCACAAGCTATGGCTTCAATGGCTGGTCTACACGGTTCCTCCCAGGCTGTGTTGGAAGGCAGCAGCCTCCATCTAAGCGGCTCATCTCGCTTGAACATAGTTGGTAACAGCACCAGGCTAGCGGTGACAAGGCCCGGCTTTGCCATTAGAGCTCAGCAAGTGCCCGCTGAGCCTGAGACTAGCCGTCGCGCTATGCTCGGTCTTGTGGCAGTTGGTTTGGCCTCGGGATCTTTTGTTCAGGCTGTGCTTGCTGAGGCTAAGCCCATCAAAATCGGCCCTCCTCCCCCGCCATCCGGTGGATTGCCTGGAACTGAGAATTCGGATGAGGCAAGAGACCTTGATCTGCCATTGAAGAAGAGGTTCTTCTTGCAGCCACTGACTCCAGCTCAGGCTGCCGCGAGGGCAAAGGAGTCAGCCAAGGAAATCCTTGCCGTCAAGTCGTTCATAGACAAGAAGGCATGGCCATTTGTCCAGAACGATCTTCGTCTCAGGGCTTCATATCTCCGATATGACCTCAAAACAGTCCTCGCTGCCAAGTCCAAGGAAGAGAAGGAGTCATTGAAGACACTCGCAGGAAAGCTCTTCCAAGACCTTGACAATTTGGACTATGCAGCAAAGATCAAAAGCACCCCACAAGCGGAGAAGTACTATGCCGAAGCTGTATCTAGCCTTAATAATGTTGTTGCAAAGCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbQ

Protein Analysis

233

Amino Acids

24.87

Weight (kDa)

9.69

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbQ	PF05757	1 - 233	8.3e-75	Oxygen evolving enhancer protein 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05180 AT4G05180
fragaria_vesca	FvH4_3g02920
malus_domestica	MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica	Prupe.4G029300_v2.0.a1
pyrus_communis	pycom05g30770 pycom10g26290
rosa_chinensis	RchiOBHm_Chr5g0004501
rosa_laevigata	RLG00000031234
rosa_multiflora	Rmu_sc0000485.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071020
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana	Rw5G003810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	2 cut(s)	192, 401
AciI	CCGC	6 cut(s)	81, 125, 168, 290, 399, 641
AclWI	GGATC	1 cut(s)	238
AcoI	YGGCCR	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	3 cut(s)	296, 299, 640
AgsI	TTSAA	4 cut(s)	21, 97, 355, 565
AhdI	GACNNNNNGTC	1 cut(s)	186
AjnI	CCWGG	3 cut(s)	45, 116, 307
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	6 cut(s)	11, 155, 389, 583, 662, 694
AluI	AGCT	6 cut(s)	11, 155, 389, 583, 662, 694
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	3 cut(s)	173, 330, 494
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	4 cut(s)	134, 222, 277, 464
ApeKI	GCWGC	6 cut(s)	63, 66, 373, 395, 533, 614
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	135, 278
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	139
AsuNHI	GCTAGC	1 cut(s)	121
AvaI	CYCGRG	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	6 cut(s)	75, 78, 382, 385, 520, 626
BccI	CCATC	3 cut(s)	81, 275, 301
BceAI	ACGGC	2 cut(s)	171, 419
BciT130I	CCWGG	3 cut(s)	47, 118, 309
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	3 cut(s)	173, 330, 494
BfaI	CTAG	3 cut(s)	122, 183, 669
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	8 cut(s)	64, 67, 82, 374, 396, 399, 534, 615
BlpI	GCTNAGC	3 cut(s)	156, 171, 261
BlsI	GCNGC	8 cut(s)	65, 68, 83, 375, 397, 400, 535, 616
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	4 cut(s)	47, 118, 138, 309
BmeRI	GACNNNNNGTC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	135, 278
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	4 cut(s)	47, 118, 138, 309
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	2 cut(s)	255, 390
Bpu1102I	GCTNAGC	3 cut(s)	156, 171, 261
BpuMI	CCSGG	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	330
BsaJI	CCNNGG	4 cut(s)	45, 225, 420, 543
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 299, 640
BseBI	CCWGG	3 cut(s)	47, 118, 309
BseDI	CCNNGG	4 cut(s)	45, 225, 420, 543
BseGI	GGATG	2 cut(s)	293, 331
BseLI	CCNNNNNNNGG	3 cut(s)	296, 299, 640
BseMII	CTCAG	7 cut(s)	162, 168, 170, 246, 306, 404, 505
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	6 cut(s)	75, 78, 382, 385, 520, 626
Bsh1236I	CGCG	2 cut(s)	192, 401
BshFI	GGCC	4 cut(s)	136, 224, 279, 466
BsiHKAI	GWGCWC	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	2 cut(s)	138, 297
BslI	CCNNNNNNNGG	3 cut(s)	296, 299, 640
BsmAI	GTCTC	3 cut(s)	173, 330, 494
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	4 cut(s)	136, 224, 279, 466
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	157, 168
Bsp143I	GATC	4 cut(s)	230, 343, 481, 621
Bsp1720I	GCTNAGC	3 cut(s)	156, 171, 261
BspACI	CCGC	6 cut(s)	81, 125, 168, 290, 399, 641
BspANI	GGCC	4 cut(s)	136, 224, 279, 466
BspCNI	CTCAG	7 cut(s)	163, 169, 169, 247, 307, 403, 504
BspFNI	CGCG	2 cut(s)	192, 401
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	330
BssECI	CCNNGG	4 cut(s)	45, 225, 420, 543
BssMI	GATC	4 cut(s)	230, 343, 481, 621
BssT1I	CCWWGG	2 cut(s)	420, 543
Bst2UI	CCWGG	3 cut(s)	47, 118, 309
Bst4CI	ACNGT	2 cut(s)	38, 526
Bst6I	CTCTTC	3 cut(s)	353, 543, 590
BstC8I	GCNNGC	3 cut(s)	123, 168, 252
BstDEI	CTNAG	9 cut(s)	77, 156, 171, 177, 255, 261, 315, 390, 491
BstF5I	GGATG	2 cut(s)	293, 331
BstFNI	CGCG	2 cut(s)	192, 401
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	4 cut(s)	233, 346, 484, 624
BstMAI	GTCTC	3 cut(s)	173, 330, 494
BstMBI	GATC	4 cut(s)	230, 343, 481, 621
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 90, 152, 172, 251, 395, 404
BstNI	CCWGG	3 cut(s)	47, 118, 309
BstSCI	CCNGG	4 cut(s)	45, 116, 136, 307
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	2 cut(s)	192, 401
BstV1I	GCAGC	6 cut(s)	75, 78, 382, 385, 520, 626
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	136, 224, 279, 466
BtsCI	GGATG	2 cut(s)	293, 331
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	3 cut(s)	123, 168, 252
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	135, 278
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	1 cut(s)	462
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	9 cut(s)	77, 156, 171, 177, 255, 261, 315, 390, 491
DpnI	GATC	4 cut(s)	232, 345, 483, 623
DpnII	GATC	4 cut(s)	230, 343, 481, 621
DriI	GACNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	464
Eam1104I	CTCTTC	3 cut(s)	353, 543, 590
Eam1105I	GACNNNNNGTC	1 cut(s)	186
EarI	CTCTTC	3 cut(s)	353, 543, 590
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	420, 543
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	3 cut(s)	45, 116, 307
EcoT14I	CCWWGG	2 cut(s)	420, 543
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	420, 543
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	1 cut(s)	465
FaiI	YATR	9 cut(s)	14, 101, 197, 449, 463, 502, 513, 612, 654
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	1 cut(s)	461
FauI	CCCGC	2 cut(s)	175, 297
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	8 cut(s)	64, 67, 82, 374, 396, 399, 534, 615
FokI	GGATG	2 cut(s)	280, 338
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	8 cut(s)	64, 67, 82, 374, 396, 399, 534, 615
FspBI	CTAG	3 cut(s)	122, 183, 669
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	8 cut(s)	64, 67, 82, 374, 396, 399, 534, 615
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	136, 224, 279, 466
HapII	CCGG	2 cut(s)	138, 297
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	465
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	3 cut(s)	382, 413, 557
HpaII	CCGG	2 cut(s)	138, 297
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	325, 509
Hpy188III	TCNNGA	2 cut(s)	228, 475
Hpy8I	GTNNAC	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	3 cut(s)	53, 451, 547
HpyCH4III	ACNGT	2 cut(s)	38, 526
HpyCH4V	TGCA	3 cut(s)	373, 614, 689
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 90, 152, 172, 251, 395, 404
HpyF3I	CTNAG	9 cut(s)	77, 156, 171, 177, 255, 261, 315, 390, 491
Hsp92II	CATG	1 cut(s)	465
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	230, 343, 481, 621
LguI	GCTCTTC	1 cut(s)	590
Lsp1109I	GCAGC	6 cut(s)	75, 78, 382, 385, 520, 626
MaeI	CTAG	3 cut(s)	122, 183, 669
MaeIII	GTNAC	2 cut(s)	107, 127
MalI	GATC	4 cut(s)	232, 345, 483, 623
MboI	GATC	4 cut(s)	230, 343, 481, 621
MboII	GAAGA	7 cut(s)	358, 367, 370, 476, 560, 577, 577
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	2 cut(s)	157, 168
MlsI	TGGCCA	1 cut(s)	466
MluCI	AATT	2 cut(s)	319, 601
MluNI	TGGCCA	1 cut(s)	466
MlyI	GAGTC	3 cut(s)	376, 422, 566
MmeI	TCCRAC	1 cut(s)	36
Mox20I	TGGCCA	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	466
MseI	TTAA	2 cut(s)	675, 700
Msp20I	TGGCCA	1 cut(s)	466
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	138, 297
MspR9I	CCNGG	4 cut(s)	47, 118, 138, 309
MvaI	CCWGG	3 cut(s)	47, 118, 309
MvnI	CGCG	2 cut(s)	192, 401
MwoI	GCNNNNNNNGC	7 cut(s)	23, 90, 152, 172, 251, 395, 404
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	230, 343, 481, 621
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	8 cut(s)	65, 68, 83, 375, 397, 400, 535, 616
PleI	GAGTC	3 cut(s)	376, 421, 565
PpsI	GAGTC	3 cut(s)	376, 421, 565
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	45, 116, 307
PspGI	CCWGG	3 cut(s)	45, 116, 307
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	135, 278
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
SacI	GAGCTC	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	675, 700
SatI	GCNGC	8 cut(s)	64, 67, 82, 374, 396, 399, 534, 615
Sau3AI	GATC	4 cut(s)	230, 343, 481, 621
Sau96I	GGNCC	2 cut(s)	135, 278
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	3 cut(s)	376, 422, 566
ScrFI	CCNGG	4 cut(s)	47, 118, 138, 309
SduI	GDGCHC	2 cut(s)	157, 168
Sse9I	AATT	2 cut(s)	319, 601
SsiI	CCGC	6 cut(s)	81, 125, 168, 290, 399, 641
SspMI	CTAG	3 cut(s)	122, 183, 669
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	4 cut(s)	45, 116, 136, 307
StyI	CCWWGG	2 cut(s)	420, 543
TaaI	ACNGT	2 cut(s)	38, 526
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	2 cut(s)	319, 601
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	2 cut(s)	84, 401
Tru1I	TTAA	2 cut(s)	675, 700
Tru9I	TTAA	2 cut(s)	675, 700
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	6 cut(s)	63, 66, 373, 395, 533, 614
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	436, 489
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	3 cut(s)	122, 183, 669
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.