pycom05g30770

Oxygen-evolving enhancer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012961
Physical Location & Seq
Reverse (-)
30749978 .. 30751132
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30770.1

Sequence Viewer

Length: 699 bp
ATGGCACAAGCTATGGCTTCAATGGCTGGCATGCACGGCTCCTCCCAGGCAATTTTGGAGGGCAGCCTCCACCTAAGTGGCTCGTCACGCTTGAACACGGTCAGCAGCACCGGCAGGCTAGCCGTGGTGAGGTCCGGGCTCACCATTAGAGCCCAGCAAGTGCCTTCGGAGCCCGAAACTAGCCGTAGGGCCGTGCTTGGTCTCGTCGCGGTTGGTTTGGCCTCCGGATCATTTGTCCAAGCTGTGCTTGCCGAGGCTAAGCCCATCAAAGTCGGTCCCCCTCCACCACCCTCCGGGGGATTAACTGGAACCCTAAACTCGGATGAGGCAAGAGACCTTGACCTGCCATTGAAGGAGAGGTTCTTCATCCAACCACTCACTCCGGCTCAGGCAGCCGCGAGGGCGAAGGAGTCGGCCAAGGAGATTTTAGCTGTCAAGGAGTACATTGACAAAAAGGCATGGCCTTACGTCCAGAACGATCTTCGTCTCAGAGCCTCATATCTCCGTTATGACCTCAAGACCGTCATTTCTGCCAAATCTAAAGCCGAGAAGGAGCCCCTCAAGGAACTCACCGGAAAACTCTTCAAGGACATTGACGGCTTGGACTACGCAGCAAAGATCAAGAGCACCCCGGAAGCAGAGAAGTACTACGCCGCAACCGTATCTTCCCTCAATGATGTTCTTGCAAAGCTTGGCTAA

Protein Analysis

233

Amino Acids

24.75

Weight (kDa)

9.47

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 1 - 232 8.9e-75 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05180 AT4G05180
fragaria_vesca FvH4_3g02920
malus_domestica MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica Prupe.4G029300_v2.0.a1
pyrus_communis pycom05g30770 pycom10g26290
rosa_chinensis RchiOBHm_Chr5g0004501
rosa_laevigata RLG00000031234
rosa_multiflora Rmu_sc0000485.1_g000003
rosa_roxburghii Rroxscaffold_1G00071020
rosa_rugosa Rorug04G0412200
rosa_samantha Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana Rw5G003810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 351
AccII CGCG 2 cut(s) 209, 398
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 3 cut(s) 209, 396, 654
AclWI GGATC 1 cut(s) 235
AcoI YGGCCR 1 cut(s) 414
AfaI GTAC 2 cut(s) 443, 647
AfiI CCNNNNNNNGG 4 cut(s) 129, 293, 296, 319
AgsI TTSAA 4 cut(s) 21, 94, 352, 586
AjnI CCWGG 1 cut(s) 45
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 4 cut(s) 11, 242, 431, 691
AluI AGCT 4 cut(s) 11, 242, 431, 691
Alw21I GWGCWC 1 cut(s) 629
Alw26I GTCTC 3 cut(s) 206, 327, 491
AlwI GGATC 1 cut(s) 235
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 4 cut(s) 189, 219, 414, 461
ApeKI GCWGC 4 cut(s) 63, 105, 392, 611
AspS9I GGNCC 3 cut(s) 132, 189, 275
AsuC2I CCSGG 3 cut(s) 136, 295, 632
AsuHPI GGTGA 3 cut(s) 133, 139, 562
AsuNHI GCTAGC 1 cut(s) 118
AvaII GGWCC 2 cut(s) 132, 275
BanII GRGCYC 4 cut(s) 141, 154, 174, 558
Bbv12I GWGCWC 1 cut(s) 629
BbvI GCAGC 4 cut(s) 75, 117, 404, 623
BccI CCATC 1 cut(s) 272
BceAI ACGGC 5 cut(s) 52, 107, 168, 176, 613
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 3 cut(s) 136, 295, 632
BcoDI GTCTC 3 cut(s) 206, 327, 491
BfaI CTAG 2 cut(s) 119, 180
BfuAI ACCTGC 1 cut(s) 351
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 6 cut(s) 64, 106, 393, 396, 612, 654
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 6 cut(s) 65, 107, 394, 397, 613, 655
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 4 cut(s) 47, 136, 295, 632
Bme18I GGWCC 2 cut(s) 132, 275
BmgT120I GGNCC 3 cut(s) 132, 189, 275
BmiI GGNNCC 5 cut(s) 40, 171, 277, 310, 555
BmrFI CCNGG 4 cut(s) 47, 136, 295, 632
BmtI GCTAGC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 387
Bpu1102I GCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 500, 545
BpuMI CCSGG 3 cut(s) 136, 295, 632
BsaI GGTCTC 2 cut(s) 206, 327
BsaJI CCNNGG 6 cut(s) 45, 123, 252, 294, 417, 630
BsaWI WCCGGW 2 cut(s) 224, 572
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 293, 296, 319
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 6 cut(s) 45, 123, 252, 294, 417, 630
BseGI GGATG 2 cut(s) 328, 366
BseLI CCNNNNNNNGG 4 cut(s) 129, 293, 296, 319
BseMII CTCAG 2 cut(s) 401, 502
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 4 cut(s) 75, 117, 404, 623
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 209, 398
BshFI GGCC 4 cut(s) 191, 221, 416, 463
BsiHKAI GWGCWC 1 cut(s) 629
BsiSI CCGG 7 cut(s) 111, 135, 225, 294, 383, 573, 632
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 4 cut(s) 129, 293, 296, 319
BsmAI GTCTC 3 cut(s) 206, 327, 491
BsmBI CGTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 4 cut(s) 191, 221, 416, 463
Bso31I GGTCTC 2 cut(s) 206, 327
Bsp1286I GDGCHC 5 cut(s) 141, 154, 174, 558, 629
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 227, 478, 618
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 3 cut(s) 209, 396, 654
BspANI GGCC 4 cut(s) 191, 221, 416, 463
BspCNI CTCAG 2 cut(s) 400, 501
BspEI TCCGGA 1 cut(s) 224
BspFNI CGCG 2 cut(s) 209, 398
BspLI GGNNCC 5 cut(s) 40, 171, 277, 310, 555
BspMI ACCTGC 1 cut(s) 351
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 235
BspTNI GGTCTC 2 cut(s) 206, 327
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 6 cut(s) 45, 123, 252, 294, 417, 630
BssMI GATC 3 cut(s) 227, 478, 618
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 3 cut(s) 100, 523, 661
Bst6I CTCTTC 1 cut(s) 587
BstC8I GCNNGC 5 cut(s) 28, 32, 116, 120, 249
BstDEI CTNAG 4 cut(s) 74, 258, 387, 488
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 328, 366
BstFNI CGCG 2 cut(s) 209, 398
BstKTI GATC 3 cut(s) 230, 481, 621
BstMAI GTCTC 3 cut(s) 206, 327, 491
BstMBI GATC 3 cut(s) 227, 478, 618
BstMWI GCNNNNNNNGC 8 cut(s) 23, 36, 87, 111, 169, 248, 392, 401
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 4 cut(s) 45, 134, 293, 630
BstUI CGCG 2 cut(s) 209, 398
BstV1I GCAGC 4 cut(s) 75, 117, 404, 623
BstXI CCANNNNNNTGG 1 cut(s) 77
BsuRI GGCC 4 cut(s) 191, 221, 416, 463
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 328, 366
BveI ACCTGC 1 cut(s) 351
Cac8I GCNNGC 5 cut(s) 28, 32, 116, 120, 249
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 132, 189, 275
Csp6I GTAC 2 cut(s) 442, 646
CviAII CATG 2 cut(s) 31, 459
CviQI GTAC 2 cut(s) 442, 646
DdeI CTNAG 4 cut(s) 74, 258, 387, 488
DpnI GATC 3 cut(s) 229, 480, 620
DpnII GATC 3 cut(s) 227, 478, 618
EaeI YGGCCR 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 4 cut(s) 141, 154, 174, 558
Eco31I GGTCTC 2 cut(s) 206, 327
Eco47I GGWCC 2 cut(s) 132, 275
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 417
EcoT38I GRGCYC 4 cut(s) 141, 154, 174, 558
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 2 cut(s) 34, 462
FaiI YATR 5 cut(s) 14, 32, 460, 499, 510
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 30, 458
Fnu4HI GCNGC 6 cut(s) 64, 106, 393, 396, 612, 654
FokI GGATG 2 cut(s) 335, 353
FriOI GRGCYC 4 cut(s) 141, 154, 174, 558
Fsp4HI GCNGC 6 cut(s) 64, 106, 393, 396, 612, 654
FspBI CTAG 2 cut(s) 119, 180
GluI GCNGC 6 cut(s) 64, 106, 393, 396, 612, 654
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 4 cut(s) 191, 221, 416, 463
HapII CCGG 7 cut(s) 111, 135, 225, 294, 383, 573, 632
Hin1II CATG 2 cut(s) 34, 462
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 1 cut(s) 410
HpaII CCGG 7 cut(s) 111, 135, 225, 294, 383, 573, 632
HphI GGTGA 3 cut(s) 133, 139, 562
Hpy188I TCNGA 3 cut(s) 169, 322, 491
Hpy188III TCNNGA 4 cut(s) 225, 472, 517, 622
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 174, 346, 400, 544
HpyCH4III ACNGT 3 cut(s) 100, 523, 661
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 2 cut(s) 34, 686
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 36, 87, 111, 169, 248, 392, 401
HpyF3I CTNAG 4 cut(s) 74, 258, 387, 488
HpySE526I ACGT 1 cut(s) 468
Hsp92II CATG 2 cut(s) 34, 462
Kpn2I TCCGGA 1 cut(s) 224
Kzo9I GATC 3 cut(s) 227, 478, 618
LmnI GCTCC 3 cut(s) 44, 169, 553
Lsp1109I GCAGC 4 cut(s) 75, 117, 404, 623
MaeI CTAG 2 cut(s) 119, 180
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 1 cut(s) 84
MalI GATC 3 cut(s) 229, 480, 620
MboI GATC 3 cut(s) 227, 478, 618
MboII GAAGA 4 cut(s) 355, 473, 574, 657
MhlI GDGCHC 5 cut(s) 141, 154, 174, 558, 629
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 394
MroI TCCGGA 1 cut(s) 224
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 7 cut(s) 111, 135, 225, 294, 383, 573, 632
MspR9I CCNGG 4 cut(s) 47, 136, 295, 632
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 209, 398
MwoI GCNNNNNNNGC 8 cut(s) 23, 36, 87, 111, 169, 248, 392, 401
NciI CCSGG 3 cut(s) 136, 295, 632
NdeII GATC 3 cut(s) 227, 478, 618
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 2 cut(s) 34, 462
NlaIV GGNNCC 5 cut(s) 40, 171, 277, 310, 555
NmeAIII GCCGAG 2 cut(s) 277, 571
NmuCI GTSAC 1 cut(s) 84
NspI RCATGY 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 75
PaeI GCATGC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 2 cut(s) 474, 657
PkrI GCNGC 6 cut(s) 65, 107, 394, 397, 613, 655
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 5 cut(s) 40, 171, 277, 310, 555
PspPI GGNCC 3 cut(s) 132, 189, 275
RsaI GTAC 2 cut(s) 443, 647
RsaNI GTAC 2 cut(s) 442, 646
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 6 cut(s) 64, 106, 393, 396, 612, 654
Sau3AI GATC 3 cut(s) 227, 478, 618
Sau96I GGNCC 3 cut(s) 132, 189, 275
ScaI AGTACT 1 cut(s) 647
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 4 cut(s) 47, 136, 295, 632
SduI GDGCHC 5 cut(s) 141, 154, 174, 558, 629
SinI GGWCC 2 cut(s) 132, 275
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 515, 560
SmoI CTYRAG 2 cut(s) 515, 560
SphI GCATGC 1 cut(s) 34
Sse9I AATT 1 cut(s) 51
SsiI CCGC 3 cut(s) 209, 396, 654
SspMI CTAG 2 cut(s) 119, 180
StyD4I CCNGG 4 cut(s) 45, 134, 293, 630
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 3 cut(s) 100, 523, 661
TaiI ACGT 1 cut(s) 471
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 51
TatI WGTACW 2 cut(s) 441, 645
TauI GCSGC 2 cut(s) 398, 656
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TseFI GTSAC 1 cut(s) 84
TseI GCWGC 4 cut(s) 63, 105, 392, 611
Tsp45I GTSAC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 355
TspGWI ACGGA 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 132, 275
XceI RCATGY 1 cut(s) 34
XspI CTAG 2 cut(s) 119, 180
ZrmI AGTACT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.