RLG00000031234

Oxygen-evolving enhancer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012961
Physical Location & Seq
Forward (+)
3223633 .. 3224763
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031234

Sequence Viewer

Length: 705 bp
ATGGCACAAGCTATGGCTTCAATGGCTGGTCTACACGGTTCCTCCCAGGCTGTGTTGGAAGGCAGCAGCCTCCATCTAAGTGGCTCATCTCGCTTGAACATAGTTGGTAACAACAGCAGGCTAGCCGTGACAAGGCCCGGCTTTGCCATTAGAGCTCAGCAAGTGCCCGCTGAGCCTGAGACTAGCCGTCGCGCTATGCTCGGTCTTGTGGCAGTTGGTTTGGCCTCGGGATCTTTTGTTCAGGCTGTGCTTGCTGAGGCTAAGCCCATCAAAGTCGGCCCTCCTCCCCCGCCATCCGGTGGATTGCCTGGAACTGAGAACTCGGATGAGGCAAGAGACCTTGATCTGCCATTGAAGAAGAGGTTCTTCTTGCAGCCACTGAATCCAGCTCAGGCTGCCGCGAGGGCAAAGGAGTCAGCCAAGGAAATCCTTGCCGTCAAGTCGTTCATAGACAAGAAGGCATGGCCATCTGTCCAGAACGATCTTCGTCTCAGGGCTTCATATCTCCGATATGACCTCAAAACAGTCCTTGCAGCTGCCAAGTCCAAGGAAGAGAAGGAGTCATTGAAGACACTCACCGGAAAGCTCTTCCAGGACCTTGACAATTTGGACTATGCAGCAAAGATCAAAAGCACCCCACAAGCGGAGAAGTACTATGCCGAAGCTGTATCTACCCTTAATAATGTTGTTGCAAAGCTTGGTTAA

Protein Analysis

235

Amino Acids

24.94

Weight (kDa)

9.69

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 1 - 234 2.7e-73 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0012961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05180 AT4G05180
fragaria_vesca FvH4_3g02920
malus_domestica MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica Prupe.4G029300_v2.0.a1
pyrus_communis pycom05g30770 pycom10g26290
rosa_chinensis RchiOBHm_Chr5g0004501
rosa_laevigata RLG00000031234
rosa_multiflora Rmu_sc0000485.1_g000003
rosa_roxburghii Rroxscaffold_1G00071020
rosa_rugosa Rorug04G0412200
rosa_samantha Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana Rw5G003810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 31
AccII CGCG 2 cut(s) 192, 401
AciI CCGC 4 cut(s) 168, 290, 399, 644
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 464
AfaI GTAC 1 cut(s) 653
AfiI CCNNNNNNNGG 4 cut(s) 132, 296, 299, 643
AgsI TTSAA 4 cut(s) 21, 97, 355, 568
AhdI GACNNNNNGTC 1 cut(s) 186
AjnI CCWGG 3 cut(s) 45, 307, 591
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 7 cut(s) 11, 155, 389, 536, 586, 665, 697
AluI AGCT 7 cut(s) 11, 155, 389, 536, 586, 665, 697
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 3 cut(s) 173, 330, 494
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 4 cut(s) 134, 222, 277, 464
ApeKI GCWGC 7 cut(s) 63, 66, 373, 395, 533, 536, 617
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 135, 278, 595
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 568
AsuNHI GCTAGC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 595
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 466
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 7 cut(s) 75, 78, 382, 385, 523, 545, 629
BccI CCATC 4 cut(s) 81, 275, 301, 475
BceAI ACGGC 3 cut(s) 110, 171, 419
BciT130I CCWGG 3 cut(s) 47, 309, 593
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 173, 330, 494
BfaI CTAG 2 cut(s) 122, 183
BglI GCCNNNNNGGC 1 cut(s) 404
BisI GCNGC 8 cut(s) 64, 67, 374, 396, 399, 534, 537, 618
BlpI GCTNAGC 3 cut(s) 156, 171, 261
BlsI GCNGC 8 cut(s) 65, 68, 375, 397, 400, 535, 538, 619
BmcAI AGTACT 1 cut(s) 653
Bme1390I CCNGG 4 cut(s) 47, 138, 309, 593
Bme18I GGWCC 1 cut(s) 595
BmeRI GACNNNNNGTC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 135, 278, 595
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 4 cut(s) 47, 138, 309, 593
BmtI GCTAGC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 575
Bpu10I CCTNAGC 2 cut(s) 255, 390
Bpu1102I GCTNAGC 3 cut(s) 156, 171, 261
BpuMI CCSGG 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 45, 225, 420, 546
BsaWI WCCGGW 2 cut(s) 296, 578
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 4 cut(s) 132, 296, 299, 643
BseBI CCWGG 3 cut(s) 47, 309, 593
BseDI CCNNGG 4 cut(s) 45, 225, 420, 546
BseGI GGATG 2 cut(s) 293, 331
BseLI CCNNNNNNNGG 4 cut(s) 132, 296, 299, 643
BseMII CTCAG 7 cut(s) 162, 168, 170, 246, 306, 404, 505
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 7 cut(s) 75, 78, 382, 385, 523, 545, 629
Bsh1236I CGCG 2 cut(s) 192, 401
BshFI GGCC 4 cut(s) 136, 224, 279, 466
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 3 cut(s) 138, 297, 579
BslI CCNNNNNNNGG 4 cut(s) 132, 296, 299, 643
BsmAI GTCTC 3 cut(s) 173, 330, 494
BsmBI CGTCTC 1 cut(s) 494
BsnI GGCC 4 cut(s) 136, 224, 279, 466
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 157, 168
Bsp143I GATC 4 cut(s) 230, 343, 481, 624
Bsp1720I GCTNAGC 3 cut(s) 156, 171, 261
BspACI CCGC 4 cut(s) 168, 290, 399, 644
BspANI GGCC 4 cut(s) 136, 224, 279, 466
BspCNI CTCAG 7 cut(s) 163, 169, 169, 247, 307, 403, 504
BspFNI CGCG 2 cut(s) 192, 401
BspLI GGNNCC 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 330
BssECI CCNNGG 4 cut(s) 45, 225, 420, 546
BssMI GATC 4 cut(s) 230, 343, 481, 624
BssT1I CCWWGG 2 cut(s) 420, 546
Bst2UI CCWGG 3 cut(s) 47, 309, 593
Bst4CI ACNGT 2 cut(s) 38, 526
Bst6I CTCTTC 3 cut(s) 353, 546, 593
BstC8I GCNNGC 4 cut(s) 119, 123, 168, 252
BstDEI CTNAG 9 cut(s) 77, 156, 171, 177, 255, 261, 315, 390, 491
BstF5I GGATG 2 cut(s) 293, 331
BstFNI CGCG 2 cut(s) 192, 401
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 4 cut(s) 233, 346, 484, 627
BstMAI GTCTC 3 cut(s) 173, 330, 494
BstMBI GATC 4 cut(s) 230, 343, 481, 624
BstMWI GCNNNNNNNGC 7 cut(s) 23, 90, 152, 172, 251, 395, 404
BstNI CCWGG 3 cut(s) 47, 309, 593
BstSCI CCNGG 4 cut(s) 45, 136, 307, 591
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 2 cut(s) 192, 401
BstV1I GCAGC 7 cut(s) 75, 78, 382, 385, 523, 545, 629
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 80
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 4 cut(s) 136, 224, 279, 466
BtsCI GGATG 2 cut(s) 293, 331
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 4 cut(s) 119, 123, 168, 252
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 3 cut(s) 135, 278, 595
Csp6I GTAC 1 cut(s) 652
CviAII CATG 1 cut(s) 462
CviQI GTAC 1 cut(s) 652
DdeI CTNAG 9 cut(s) 77, 156, 171, 177, 255, 261, 315, 390, 491
DpnI GATC 4 cut(s) 232, 345, 483, 626
DpnII GATC 4 cut(s) 230, 343, 481, 624
DriI GACNNNNNGTC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 3 cut(s) 353, 546, 593
Eam1105I GACNNNNNGTC 1 cut(s) 186
EarI CTCTTC 3 cut(s) 353, 546, 593
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 420, 546
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 3 cut(s) 45, 307, 591
EcoT14I CCWWGG 2 cut(s) 420, 546
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 420, 546
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 1 cut(s) 465
FaiI YATR 9 cut(s) 14, 101, 197, 449, 463, 502, 513, 615, 657
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 1 cut(s) 461
FauI CCCGC 2 cut(s) 175, 297
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 8 cut(s) 64, 67, 374, 396, 399, 534, 537, 618
FokI GGATG 2 cut(s) 280, 338
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 8 cut(s) 64, 67, 374, 396, 399, 534, 537, 618
FspBI CTAG 2 cut(s) 122, 183
GlaI GCGC 1 cut(s) 193
GluI GCNGC 8 cut(s) 64, 67, 374, 396, 399, 534, 537, 618
HaeIII GGCC 4 cut(s) 136, 224, 279, 466
HapII CCGG 3 cut(s) 138, 297, 579
HhaI GCGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 465
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 3 cut(s) 382, 413, 560
HpaII CCGG 3 cut(s) 138, 297, 579
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 325, 509
Hpy188III TCNNGA 2 cut(s) 228, 475
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 3 cut(s) 53, 451, 550
HpyCH4III ACNGT 2 cut(s) 38, 526
HpyCH4V TGCA 4 cut(s) 373, 533, 617, 692
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 90, 152, 172, 251, 395, 404
HpyF3I CTNAG 9 cut(s) 77, 156, 171, 177, 255, 261, 315, 390, 491
Hsp92II CATG 1 cut(s) 465
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 4 cut(s) 230, 343, 481, 624
LguI GCTCTTC 1 cut(s) 593
Lsp1109I GCAGC 7 cut(s) 75, 78, 382, 385, 523, 545, 629
MaeI CTAG 2 cut(s) 122, 183
MaeIII GTNAC 2 cut(s) 107, 127
MalI GATC 4 cut(s) 232, 345, 483, 626
MboI GATC 4 cut(s) 230, 343, 481, 624
MboII GAAGA 7 cut(s) 358, 367, 370, 476, 563, 580, 580
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 2 cut(s) 157, 168
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 1 cut(s) 604
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 2 cut(s) 422, 569
MmeI TCCRAC 1 cut(s) 36
Mox20I TGGCCA 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 466
MseI TTAA 2 cut(s) 678, 703
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 2 cut(s) 170, 536
MspI CCGG 3 cut(s) 138, 297, 579
MspR9I CCNGG 4 cut(s) 47, 138, 309, 593
MvaI CCWGG 3 cut(s) 47, 309, 593
MvnI CGCG 2 cut(s) 192, 401
MwoI GCNNNNNNNGC 7 cut(s) 23, 90, 152, 172, 251, 395, 404
NciI CCSGG 1 cut(s) 138
NdeII GATC 4 cut(s) 230, 343, 481, 624
NheI GCTAGC 1 cut(s) 121
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 299
PfoI TCCNGGA 1 cut(s) 591
PkrI GCNGC 8 cut(s) 65, 68, 375, 397, 400, 535, 538, 619
PleI GAGTC 2 cut(s) 421, 568
PpsI GAGTC 2 cut(s) 421, 568
PpuMI RGGWCCY 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 3 cut(s) 45, 307, 591
PspGI CCWGG 3 cut(s) 45, 307, 591
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 135, 278, 595
PspPPI RGGWCCY 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 1 cut(s) 653
RsaNI GTAC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 78
SacI GAGCTC 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 2 cut(s) 678, 703
SatI GCNGC 8 cut(s) 64, 67, 374, 396, 399, 534, 537, 618
Sau3AI GATC 4 cut(s) 230, 343, 481, 624
Sau96I GGNCC 3 cut(s) 135, 278, 595
ScaI AGTACT 1 cut(s) 653
SchI GAGTC 2 cut(s) 422, 569
ScrFI CCNGG 4 cut(s) 47, 138, 309, 593
SduI GDGCHC 2 cut(s) 157, 168
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 1 cut(s) 604
SsiI CCGC 4 cut(s) 168, 290, 399, 644
SspMI CTAG 2 cut(s) 122, 183
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 4 cut(s) 45, 136, 307, 591
StyI CCWWGG 2 cut(s) 420, 546
TaaI ACNGT 2 cut(s) 38, 526
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 604
TatI WGTACW 1 cut(s) 651
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 678, 703
Tru9I TTAA 2 cut(s) 678, 703
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 7 cut(s) 63, 66, 373, 395, 533, 536, 617
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 436, 489
TspRI CASTG 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 122, 183
ZrmI AGTACT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.