Rroxscaffold_1G00071020

Oxygen-evolving enhancer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012961
Physical Location & Seq
Reverse (-)
91972645 .. 91974052
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071020.1

Sequence Viewer

Length: 702 bp
ATGGCACAAGCTATGGCTTCAATGGCTGGTCTACACGGTTCCTCCCAGGCTGTGTTGGAAGGCAGCAGCCTCTATCTAAGTGGCTCATCTCGCCTCAACATAGTTGGTAACAGCACCAGGCTAGCGGTGACAAGGCCCGGCTTCGCCATTAGAGCTCAGCAAGTGCCCGCTGAGCCTGAGACTAGCCGGCGCGCTATGCTCGGTCTTGTGGCAGTCGGTTTGGCCTCGGGATCTTTTGTTCAGGCTGTGCTTGCTGAGGCTAAGCCCATCAAGGTCGGGCCTCCTCCCCCGCCATCCGGTGGATTGCCTGGAACTGAGAACTCGGATGAGGCAAGAGACCTTGATCTGCCATTGAAGAAGAGGTTCTTCTTGCAGCCACTGACTCCAGCTCAGGCTGCCGCGAGGGCAAAGGAGTCAGCCAAGGAAATCCTTGCCATCAAGTCGTTCATAGACAAGAAGGCATGGCCATTTGTCCAGAACGATCTTCGTCTCAGGGCTTCATATCTCCGATATGACCTCAAAACAGTACTCGCTGCCAAGTCCAAGGAAGAGAAGGAGTCATTGAAGACACTCACCGGAAAGCTCTTCCAAGACCTTGACAATTTGGACCATGCAGCAAAGATCAAAAGCACCCCACAAGCGGAGAAGTACTATGCCGAAGCTGTATCTACCCTTAATAATGTTGTTGCAAAGCTTGGTTAA

Protein Analysis

233

Amino Acids

24.91

Weight (kDa)

9.69

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbQ PF05757 1 - 233 1e-74 Oxygen evolving enhancer protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05180 AT4G05180
fragaria_vesca FvH4_3g02920
malus_domestica MD05G1336200.v1.1 MD10G1311700.v1.1
prunus_persica Prupe.4G029300_v2.0.a1
pyrus_communis pycom05g30770 pycom10g26290
rosa_chinensis RchiOBHm_Chr5g0004501
rosa_laevigata RLG00000031234
rosa_multiflora Rmu_sc0000485.1_g000003
rosa_roxburghii Rroxscaffold_1G00071020
rosa_rugosa Rorug04G0412200
rosa_samantha Rh5AG039900 Rh5BG038900 Rh5CG043000 Rh5DG038800
rosa_wichuraiana Rw5G003810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 31
AccII CGCG 2 cut(s) 192, 401
AciI CCGC 5 cut(s) 125, 168, 290, 399, 641
AclWI GGATC 1 cut(s) 238
AcoI YGGCCR 1 cut(s) 464
AfaI GTAC 2 cut(s) 528, 650
AfiI CCNNNNNNNGG 3 cut(s) 296, 299, 640
AgsI TTSAA 3 cut(s) 21, 355, 565
AjnI CCWGG 3 cut(s) 45, 116, 307
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 6 cut(s) 11, 155, 389, 583, 662, 694
AluI AGCT 6 cut(s) 11, 155, 389, 583, 662, 694
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 3 cut(s) 173, 330, 494
AlwI GGATC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 4 cut(s) 134, 222, 278, 464
ApeKI GCWGC 6 cut(s) 63, 66, 373, 395, 533, 614
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 2 cut(s) 192, 194
AspS9I GGNCC 3 cut(s) 135, 278, 607
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 139, 565
AsuNHI GCTAGC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 466
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 6 cut(s) 75, 78, 382, 385, 520, 626
BccI CCATC 3 cut(s) 275, 301, 443
BciT130I CCWGG 3 cut(s) 47, 118, 309
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 173, 330, 494
BfaI CTAG 2 cut(s) 122, 183
BglI GCCNNNNNGGC 1 cut(s) 404
BisI GCNGC 7 cut(s) 64, 67, 374, 396, 399, 534, 615
BlpI GCTNAGC 3 cut(s) 156, 171, 261
BlsI GCNGC 7 cut(s) 65, 68, 375, 397, 400, 535, 616
BmcAI AGTACT 2 cut(s) 528, 650
Bme1390I CCNGG 4 cut(s) 47, 118, 138, 309
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 135, 278, 607
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 4 cut(s) 47, 118, 138, 309
BmtI GCTAGC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 369
Bpu10I CCTNAGC 2 cut(s) 255, 390
Bpu1102I GCTNAGC 3 cut(s) 156, 171, 261
BpuMI CCSGG 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 4 cut(s) 45, 225, 420, 543
BsaWI WCCGGW 2 cut(s) 296, 575
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 299, 640
Bse118I RCCGGY 1 cut(s) 186
BseBI CCWGG 3 cut(s) 47, 118, 309
BseDI CCNNGG 4 cut(s) 45, 225, 420, 543
BseGI GGATG 2 cut(s) 293, 331
BseLI CCNNNNNNNGG 3 cut(s) 296, 299, 640
BseMII CTCAG 7 cut(s) 162, 168, 170, 246, 306, 404, 505
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 6 cut(s) 75, 78, 382, 385, 520, 626
Bsh1236I CGCG 2 cut(s) 192, 401
BshFI GGCC 4 cut(s) 136, 224, 280, 466
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 4 cut(s) 138, 187, 297, 576
BslI CCNNNNNNNGG 3 cut(s) 296, 299, 640
BsmAI GTCTC 3 cut(s) 173, 330, 494
BsmBI CGTCTC 1 cut(s) 494
BsnI GGCC 4 cut(s) 136, 224, 280, 466
Bso31I GGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 2 cut(s) 157, 168
Bsp143I GATC 4 cut(s) 230, 343, 481, 621
Bsp1720I GCTNAGC 3 cut(s) 156, 171, 261
BspACI CCGC 5 cut(s) 125, 168, 290, 399, 641
BspANI GGCC 4 cut(s) 136, 224, 280, 466
BspCNI CTCAG 7 cut(s) 163, 169, 169, 247, 307, 403, 504
BspFNI CGCG 2 cut(s) 192, 401
BspLI GGNNCC 1 cut(s) 40
BspOI GCTAGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 590
BspTNI GGTCTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 4 cut(s) 45, 225, 420, 543
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 4 cut(s) 230, 343, 481, 621
BssT1I CCWWGG 2 cut(s) 420, 543
Bst2UI CCWGG 3 cut(s) 47, 118, 309
Bst4CI ACNGT 2 cut(s) 38, 526
Bst6I CTCTTC 3 cut(s) 353, 543, 590
BstC8I GCNNGC 5 cut(s) 123, 168, 188, 192, 252
BstDEI CTNAG 9 cut(s) 77, 156, 171, 177, 255, 261, 315, 390, 491
BstF5I GGATG 2 cut(s) 293, 331
BstFNI CGCG 2 cut(s) 192, 401
BstHHI GCGC 2 cut(s) 192, 194
BstKTI GATC 4 cut(s) 233, 346, 484, 624
BstMAI GTCTC 3 cut(s) 173, 330, 494
BstMBI GATC 4 cut(s) 230, 343, 481, 621
BstMWI GCNNNNNNNGC 8 cut(s) 23, 90, 152, 172, 196, 251, 395, 404
BstNI CCWGG 3 cut(s) 47, 118, 309
BstSCI CCNGG 4 cut(s) 45, 116, 136, 307
BstSLI GKGCMC 1 cut(s) 168
BstUI CGCG 2 cut(s) 192, 401
BstV1I GCAGC 6 cut(s) 75, 78, 382, 385, 520, 626
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 4 cut(s) 136, 224, 280, 466
BtsCI GGATG 2 cut(s) 293, 331
BtsIMutI CAGTG 1 cut(s) 377
Cac8I GCNNGC 5 cut(s) 123, 168, 188, 192, 252
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 2 cut(s) 192, 194
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 135, 278, 607
Csp6I GTAC 2 cut(s) 527, 649
CviAII CATG 2 cut(s) 462, 611
CviQI GTAC 2 cut(s) 527, 649
DdeI CTNAG 9 cut(s) 77, 156, 171, 177, 255, 261, 315, 390, 491
DpnI GATC 4 cut(s) 232, 345, 483, 623
DpnII GATC 4 cut(s) 230, 343, 481, 621
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 3 cut(s) 353, 543, 590
EarI CTCTTC 3 cut(s) 353, 543, 590
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 420, 543
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 155
EcoRII CCWGG 3 cut(s) 45, 116, 307
EcoT14I CCWWGG 2 cut(s) 420, 543
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 420, 543
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 2 cut(s) 465, 614
FaiI YATR 9 cut(s) 14, 101, 197, 449, 463, 502, 513, 612, 654
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 2 cut(s) 461, 610
FauI CCCGC 2 cut(s) 175, 297
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 7 cut(s) 64, 67, 374, 396, 399, 534, 615
FokI GGATG 2 cut(s) 280, 338
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 7 cut(s) 64, 67, 374, 396, 399, 534, 615
FspBI CTAG 2 cut(s) 122, 183
GlaI GCGC 2 cut(s) 191, 193
GluI GCNGC 7 cut(s) 64, 67, 374, 396, 399, 534, 615
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 4 cut(s) 136, 224, 280, 466
HapII CCGG 4 cut(s) 138, 187, 297, 576
HhaI GCGC 2 cut(s) 192, 194
Hin1II CATG 2 cut(s) 465, 614
Hin6I GCGC 2 cut(s) 190, 192
HinP1I GCGC 2 cut(s) 190, 192
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 3 cut(s) 382, 413, 557
HpaII CCGG 4 cut(s) 138, 187, 297, 576
HphI GGTGA 2 cut(s) 139, 565
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 2 cut(s) 325, 509
Hpy188III TCNNGA 2 cut(s) 228, 475
Hpy8I GTNNAC 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 53, 451, 547
HpyCH4III ACNGT 2 cut(s) 38, 526
HpyCH4V TGCA 3 cut(s) 373, 614, 689
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 90, 152, 172, 196, 251, 395, 404
HpyF3I CTNAG 9 cut(s) 77, 156, 171, 177, 255, 261, 315, 390, 491
Hsp92II CATG 2 cut(s) 465, 614
HspAI GCGC 2 cut(s) 190, 192
KroI GCCGGC 1 cut(s) 186
KroNI GCCGGC 1 cut(s) 188
Kzo9I GATC 4 cut(s) 230, 343, 481, 621
LguI GCTCTTC 1 cut(s) 590
Lsp1109I GCAGC 6 cut(s) 75, 78, 382, 385, 520, 626
MaeI CTAG 2 cut(s) 122, 183
MaeIII GTNAC 2 cut(s) 107, 127
MalI GATC 4 cut(s) 232, 345, 483, 623
MboI GATC 4 cut(s) 230, 343, 481, 621
MboII GAAGA 7 cut(s) 358, 367, 370, 476, 560, 577, 577
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 2 cut(s) 157, 168
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 1 cut(s) 601
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 3 cut(s) 376, 422, 566
MmeI TCCRAC 1 cut(s) 36
Mox20I TGGCCA 1 cut(s) 466
MroNI GCCGGC 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 466
MseI TTAA 2 cut(s) 675, 700
Msp20I TGGCCA 1 cut(s) 466
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 4 cut(s) 138, 187, 297, 576
MspR9I CCNGG 4 cut(s) 47, 118, 138, 309
MvaI CCWGG 3 cut(s) 47, 118, 309
MvnI CGCG 2 cut(s) 192, 401
MwoI GCNNNNNNNGC 8 cut(s) 23, 90, 152, 172, 196, 251, 395, 404
NaeI GCCGGC 1 cut(s) 188
NciI CCSGG 1 cut(s) 138
NdeII GATC 4 cut(s) 230, 343, 481, 621
NgoMIV GCCGGC 1 cut(s) 186
NheI GCTAGC 1 cut(s) 121
NlaIII CATG 2 cut(s) 465, 614
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 127
PauI GCGCGC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 590
PdiI GCCGGC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 7 cut(s) 65, 68, 375, 397, 400, 535, 616
PleI GAGTC 3 cut(s) 376, 421, 565
PpsI GAGTC 3 cut(s) 376, 421, 565
Psp124BI GAGCTC 1 cut(s) 157
Psp6I CCWGG 3 cut(s) 45, 116, 307
PspGI CCWGG 3 cut(s) 45, 116, 307
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 135, 278, 607
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 230
PteI GCGCGC 1 cut(s) 190
RsaI GTAC 2 cut(s) 528, 650
RsaNI GTAC 2 cut(s) 527, 649
SacI GAGCTC 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 590
SaqAI TTAA 2 cut(s) 675, 700
SatI GCNGC 7 cut(s) 64, 67, 374, 396, 399, 534, 615
Sau3AI GATC 4 cut(s) 230, 343, 481, 621
Sau96I GGNCC 3 cut(s) 135, 278, 607
ScaI AGTACT 2 cut(s) 528, 650
SchI GAGTC 3 cut(s) 376, 422, 566
ScrFI CCNGG 4 cut(s) 47, 118, 138, 309
SduI GDGCHC 2 cut(s) 157, 168
SinI GGWCC 1 cut(s) 607
Sse9I AATT 1 cut(s) 601
SsiI CCGC 5 cut(s) 125, 168, 290, 399, 641
SspMI CTAG 2 cut(s) 122, 183
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 4 cut(s) 45, 116, 136, 307
StyI CCWWGG 2 cut(s) 420, 543
TaaI ACNGT 2 cut(s) 38, 526
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 601
TatI WGTACW 2 cut(s) 526, 648
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 2 cut(s) 675, 700
Tru9I TTAA 2 cut(s) 675, 700
TscAI CASTG 1 cut(s) 384
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 6 cut(s) 63, 66, 373, 395, 533, 614
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 436, 489
TspRI CASTG 1 cut(s) 384
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 2 cut(s) 122, 183
ZrmI AGTACT 2 cut(s) 528, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.