Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1629270 .. 1629924

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGAAGAAGGGTGTGAAGCCGGATGTGATCACGTTTAACAAGATTTTGGATTGCTTGTATGGGAATCAGCGGTTTTCGGATGCTGAGATGATATGGGGTGTAATGGTGGAGAAGAATGTTGTTCCGGATATTAGGAGCTATAATGCCAAGTTGATGGGATTGGCTTTGGAGAAGAAGAGTAAAGAAGGGGCTCAATTGGTTGAGGAGTTGAGGAGTAGTGGAGTGGAACCTGATGTGTTTAGCTTCAATGCCTTGATTAAGGGATTTGTGGGTGAGGGGAACTTGGAGGAAGCTAAGAAGTGGTATGGTGAACTAGTGAAGAGTGGTTGTGCTCCGGATAAATGGACTTTCGAGACGCTTGTTCCCTTTGCTTGTGAGAAGGGTGATGTGGAGTATGGTTTTGAGCTCTGCAAGGATATTTTCCAAAGGCGCCGTCTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

149

Amino Acids

16.79

Weight (kDa)

5.39

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 50	3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	8 - 55	2.4e-08	PPR repeat family
PPR_2	PF13041	43 - 91	4.7e-08	PPR repeat family
PPR_3	PF13812	67 - 121	3.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	75 - 101	9.8e-06	PPR repeat
PPR_2	PF13041	78 - 122	3.6e-12	PPR repeat family
PPR	PF01535	81 - 111	1.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03060 FvH4_3g03090
pyrus_communis	pycom01g12300
rosa_laevigata	RLG00000014597
rosa_multiflora	Rmu_sc0008316.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205910 Rroxscaffold_7G00205970 Rroxscaffold_7G00205980
rosa_samantha	Rh7DG423600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccIII	TCCGGA	2 cut(s)	127, 337
AciI	CCGC	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	250
AhlI	ACTAGT	1 cut(s)	316
AluBI	AGCT	4 cut(s)	141, 246, 296, 409
AluI	AGCT	4 cut(s)	141, 246, 296, 409
Alw21I	GWGCWC	2 cut(s)	337, 411
Alw26I	GTCTC	1 cut(s)	350
Aor13HI	TCCGGA	2 cut(s)	127, 337
ArsI	GACNNNNNNTTYG	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	287, 323, 398
BanI	GGYRCC	1 cut(s)	432
BanII	GRGCYC	2 cut(s)	196, 411
Bbv12I	GWGCWC	2 cut(s)	337, 411
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	420
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	2 cut(s)	317, 445
BfoI	RGCGCY	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	231, 434
BmsI	GCATC	1 cut(s)	73
BsaHI	GRCGYC	1 cut(s)	433
BsaWI	WCCGGW	2 cut(s)	127, 337
BseAI	TCCGGA	2 cut(s)	127, 337
BseGI	GGATG	2 cut(s)	31, 88
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	221, 229
BshNI	GGYRCC	1 cut(s)	432
BsiHKAI	GWGCWC	2 cut(s)	337, 411
BsiSI	CCGG	3 cut(s)	23, 128, 338
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	196, 337, 411
Bsp13I	TCCGGA	2 cut(s)	127, 337
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	2 cut(s)	127, 337
BspLI	GGNNCC	2 cut(s)	231, 434
BspT107I	GGYRCC	1 cut(s)	432
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	433
Bst6I	CTCTTC	2 cut(s)	173, 317
BstACI	GRCGYC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	87, 297
BstF5I	GGATG	2 cut(s)	31, 88
BstH2I	RGCGCY	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	31, 88
CfoI	GCGC	1 cut(s)	435
CseI	GACGC	1 cut(s)	367
CviJI	RGCY	7 cut(s)	22, 141, 167, 194, 246, 296, 409
CviKI_1	RGCY	7 cut(s)	22, 141, 167, 194, 246, 296, 409
DdeI	CTNAG	2 cut(s)	87, 297
DinI	GGCGCC	1 cut(s)	434
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	173, 317
EarI	CTCTTC	2 cut(s)	173, 317
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	196, 411
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	196, 411
EgeI	GGCGCC	1 cut(s)	434
EheI	GGCGCC	1 cut(s)	434
Esp3I	CGTCTC	1 cut(s)	350
FaiI	YATR	5 cut(s)	63, 97, 144, 309, 399
FbaI	TGATCA	1 cut(s)	30
FokI	GGATG	2 cut(s)	38, 95
FriOI	GRGCYC	2 cut(s)	196, 411
FspBI	CTAG	2 cut(s)	317, 445
GlaI	GCGC	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	436
HapII	CCGG	3 cut(s)	23, 128, 338
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	23, 128, 338
HphI	GGTGA	3 cut(s)	287, 323, 398
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	128, 338, 355
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	4, 182, 376
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	441
HpyF3I	CTNAG	2 cut(s)	87, 297
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	433
HspAI	GCGC	1 cut(s)	433
KasI	GGCGCC	1 cut(s)	432
Kpn2I	TCCGGA	2 cut(s)	127, 337
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	138, 340
LpnPI	CCDG	4 cut(s)	36, 141, 246, 351
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	317, 445
MaeII	ACGT	1 cut(s)	35
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	5 cut(s)	19, 127, 187, 190, 334
MfeI	CAATTG	1 cut(s)	197
MhlI	GDGCHC	3 cut(s)	196, 337, 411
MluCI	AATT	1 cut(s)	197
Mly113I	GGCGCC	1 cut(s)	433
MnlI	CCTC	4 cut(s)	199, 207, 271, 283
MroI	TCCGGA	2 cut(s)	127, 337
MseI	TTAA	2 cut(s)	39, 261
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	3 cut(s)	23, 128, 338
MunI	CAATTG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	441
NarI	GGCGCC	1 cut(s)	433
NdeII	GATC	1 cut(s)	30
NlaIV	GGNNCC	2 cut(s)	231, 434
PfeI	GAWTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	231, 434
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	39, 261
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	3 cut(s)	196, 337, 411
SetI	ASST	6 cut(s)	38, 143, 235, 248, 298, 411
SfaNI	GCATC	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	316
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	1 cut(s)	73
SspDI	GGCGCC	1 cut(s)	432
SspMI	CTAG	2 cut(s)	317, 445
SstI	GAGCTC	1 cut(s)	411
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	354
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	39, 261
Tru9I	TTAA	2 cut(s)	39, 261
XspI	CTAG	2 cut(s)	317, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.