Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0018811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1654662 .. 1655297

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGAAGAAGGGTGTGAAGCCGGATGTGATCACGTTTAACAAGATTTTGGATTGCTTGTATGGGAATCAGCGGTTTTCGGATGCTGAGATGATATGGGGTGTAATGGTGGAGAAGAATGTTGTTCCGGATATTAGGAGCTATAATGCCAAGTTGATGGGATTGGCTTTGGAGAAGAGTAAAGAAGGGGCTCAATTGGTTGAGGAGTTGAGGAGTAGTGGAGTGGAACCTGATGTGTTTAGCTTCAATGCCTTGATTAAGGGATTTGTGGGTGAGGGGAACTTGGAGGAAGCTAAGCAGTGGTATGGTGAACTAGTGAAGAGTGGTTGTGCTCCGGATAAATGGACTTTCGAGACGCTTGTTCCCTTTGCTTGTGAGAAGGGTGATGTGGAGTATGGTTTTGAGCTCTGCAAGGATATTTTCCAAAGGCGCCGTCTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

148

Amino Acids

16.66

Weight (kDa)

5.04

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 50	2.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	8 - 55	2.2e-08	PPR repeat family
PPR_3	PF13812	66 - 120	2.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	77 - 121	6.7e-12	PPR repeat family
PPR	PF01535	80 - 110	3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03060 FvH4_3g03090
pyrus_communis	pycom01g12300
rosa_laevigata	RLG00000014597
rosa_multiflora	Rmu_sc0008316.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205910 Rroxscaffold_7G00205970 Rroxscaffold_7G00205980
rosa_samantha	Rh7DG423600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	429
AccIII	TCCGGA	2 cut(s)	127, 334
AciI	CCGC	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	313
AluBI	AGCT	4 cut(s)	141, 243, 293, 406
AluI	AGCT	4 cut(s)	141, 243, 293, 406
Alw21I	GWGCWC	2 cut(s)	334, 408
Alw26I	GTCTC	1 cut(s)	347
Aor13HI	TCCGGA	2 cut(s)	127, 334
ArsI	GACNNNNNNTTYG	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	432
AsuHPI	GGTGA	3 cut(s)	284, 320, 395
BanI	GGYRCC	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	193, 408
Bbv12I	GWGCWC	2 cut(s)	334, 408
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	313
BfaI	CTAG	2 cut(s)	314, 442
BfoI	RGCGCY	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	228, 431
BmsI	GCATC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	430
BsaWI	WCCGGW	2 cut(s)	127, 334
BseAI	TCCGGA	2 cut(s)	127, 334
BseGI	GGATG	2 cut(s)	31, 88
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	2 cut(s)	218, 226
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	334, 408
BsiSI	CCGG	3 cut(s)	23, 128, 335
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	3 cut(s)	193, 334, 408
Bsp13I	TCCGGA	2 cut(s)	127, 334
Bsp143I	GATC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	2 cut(s)	127, 334
BspLI	GGNNCC	2 cut(s)	228, 431
BspT107I	GGYRCC	1 cut(s)	429
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	430
Bst6I	CTCTTC	2 cut(s)	170, 314
BstACI	GRCGYC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	87, 294
BstF5I	GGATG	2 cut(s)	31, 88
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	31, 88
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
CfoI	GCGC	1 cut(s)	432
CseI	GACGC	1 cut(s)	364
CviJI	RGCY	7 cut(s)	22, 141, 167, 191, 243, 293, 406
CviKI_1	RGCY	7 cut(s)	22, 141, 167, 191, 243, 293, 406
DdeI	CTNAG	2 cut(s)	87, 294
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	170, 314
EarI	CTCTTC	2 cut(s)	170, 314
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	2 cut(s)	193, 408
Eco53kI	GAGCTC	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	193, 408
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	347
FaiI	YATR	5 cut(s)	63, 97, 144, 306, 396
FbaI	TGATCA	1 cut(s)	30
FokI	GGATG	2 cut(s)	38, 95
FriOI	GRGCYC	2 cut(s)	193, 408
FspBI	CTAG	2 cut(s)	314, 442
GlaI	GCGC	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	433
HapII	CCGG	3 cut(s)	23, 128, 335
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	23, 128, 335
HphI	GGTGA	3 cut(s)	284, 320, 395
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	3 cut(s)	128, 335, 352
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	4, 179, 373
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	2 cut(s)	87, 294
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	430
HspAI	GCGC	1 cut(s)	430
KasI	GGCGCC	1 cut(s)	429
Kpn2I	TCCGGA	2 cut(s)	127, 334
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	138, 337
LpnPI	CCDG	4 cut(s)	36, 141, 243, 348
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	314, 442
MaeII	ACGT	1 cut(s)	35
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	19, 127, 187, 331
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	3 cut(s)	193, 334, 408
MluCI	AATT	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	430
MnlI	CCTC	4 cut(s)	196, 204, 268, 280
MroI	TCCGGA	2 cut(s)	127, 334
MseI	TTAA	2 cut(s)	39, 258
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	3 cut(s)	23, 128, 335
MunI	CAATTG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	438
NarI	GGCGCC	1 cut(s)	430
NdeII	GATC	1 cut(s)	30
NlaIV	GGNNCC	2 cut(s)	228, 431
PfeI	GAWTC	1 cut(s)	67
PluTI	GGCGCC	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	228, 431
SacI	GAGCTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	39, 258
Sau3AI	GATC	1 cut(s)	30
SduI	GDGCHC	3 cut(s)	193, 334, 408
SetI	ASST	6 cut(s)	38, 143, 232, 245, 295, 408
SfaNI	GCATC	1 cut(s)	73
SfoI	GGCGCC	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	313
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	73
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	2 cut(s)	314, 442
SstI	GAGCTC	1 cut(s)	408
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	39, 258
Tru9I	TTAA	2 cut(s)	39, 258
TscAI	CASTG	1 cut(s)	305
TspRI	CASTG	1 cut(s)	305
XspI	CTAG	2 cut(s)	314, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.