Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g03060 FvH4_3g03090 |
| pyrus_communis | pycom01g12300 |
| rosa_laevigata | RLG00000014597 |
| rosa_multiflora | Rmu_sc0008316.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00205910 Rroxscaffold_7G00205970 Rroxscaffold_7G00205980 |
| rosa_samantha | Rh7DG423600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 87 |
| AgsI | TTSAA | 2 cut(s) | 53, 176 |
| AluBI | AGCT | 2 cut(s) | 32, 112 |
| AluI | AGCT | 2 cut(s) | 32, 112 |
| AlwI | GGATC | 1 cut(s) | 87 |
| AoxI | GGCC | 2 cut(s) | 17, 193 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 29 |
| AsuNHI | GCTAGC | 1 cut(s) | 86 |
| BccI | CCATC | 1 cut(s) | 61 |
| BfaI | CTAG | 1 cut(s) | 87 |
| BfmI | CTRYAG | 1 cut(s) | 21 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BmtI | GCTAGC | 1 cut(s) | 90 |
| Bse118I | RCCGGY | 1 cut(s) | 195 |
| BshFI | GGCC | 2 cut(s) | 19, 195 |
| BsiSI | CCGG | 1 cut(s) | 196 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| BsnI | GGCC | 2 cut(s) | 19, 195 |
| Bsp143I | GATC | 1 cut(s) | 79 |
| BspANI | GGCC | 2 cut(s) | 19, 195 |
| BspOI | GCTAGC | 1 cut(s) | 90 |
| BspPI | GGATC | 1 cut(s) | 87 |
| BsrFI | RCCGGY | 1 cut(s) | 195 |
| BssAI | RCCGGY | 1 cut(s) | 195 |
| BssMI | GATC | 1 cut(s) | 79 |
| Bst6I | CTCTTC | 1 cut(s) | 122 |
| BstC8I | GCNNGC | 3 cut(s) | 88, 193, 197 |
| BstKTI | GATC | 1 cut(s) | 82 |
| BstMBI | GATC | 1 cut(s) | 79 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 118, 192 |
| BstSFI | CTRYAG | 1 cut(s) | 21 |
| BstX2I | RGATCY | 1 cut(s) | 79 |
| BstYI | RGATCY | 1 cut(s) | 79 |
| BsuRI | GGCC | 2 cut(s) | 19, 195 |
| Cac8I | GCNNGC | 3 cut(s) | 88, 193, 197 |
| Cfr10I | RCCGGY | 1 cut(s) | 195 |
| CviJI | RGCY | 7 cut(s) | 19, 32, 57, 86, 112, 195, 199 |
| CviKI_1 | RGCY | 7 cut(s) | 19, 32, 57, 86, 112, 195, 199 |
| DpnI | GATC | 1 cut(s) | 81 |
| DpnII | GATC | 1 cut(s) | 79 |
| Eam1104I | CTCTTC | 1 cut(s) | 122 |
| EarI | CTCTTC | 1 cut(s) | 122 |
| FaiI | YATR | 4 cut(s) | 29, 37, 183, 212 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FspBI | CTAG | 1 cut(s) | 87 |
| HaeIII | GGCC | 2 cut(s) | 19, 195 |
| HapII | CCGG | 1 cut(s) | 196 |
| HpaII | CCGG | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 1 cut(s) | 79 |
| Hpy188III | TCNNGA | 1 cut(s) | 146 |
| Hpy8I | GTNNAC | 1 cut(s) | 106 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 118, 192 |
| KroI | GCCGGC | 1 cut(s) | 195 |
| KroNI | GCCGGC | 1 cut(s) | 197 |
| Kzo9I | GATC | 1 cut(s) | 79 |
| LpnPI | CCDG | 5 cut(s) | 68, 76, 159, 177, 209 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 1 cut(s) | 87 |
| MalI | GATC | 1 cut(s) | 81 |
| MboI | GATC | 1 cut(s) | 79 |
| MboII | GAAGA | 2 cut(s) | 76, 139 |
| MflI | RGATCY | 1 cut(s) | 79 |
| MroNI | GCCGGC | 1 cut(s) | 195 |
| MseI | TTAA | 1 cut(s) | 162 |
| MspI | CCGG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 118, 192 |
| NaeI | GCCGGC | 1 cut(s) | 197 |
| NdeII | GATC | 1 cut(s) | 79 |
| NgoMIV | GCCGGC | 1 cut(s) | 195 |
| NheI | GCTAGC | 1 cut(s) | 86 |
| PdiI | GCCGGC | 1 cut(s) | 197 |
| PsuI | RGATCY | 1 cut(s) | 79 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| Sau3AI | GATC | 1 cut(s) | 79 |
| SetI | ASST | 3 cut(s) | 15, 34, 114 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 21 |
| SgeI | CNNG | 9 cut(s) | 65, 70, 95, 99, 103, 121, 158, 204, 208 |
| SspMI | CTAG | 1 cut(s) | 87 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TspDTI | ATGAA | 3 cut(s) | 114, 140, 170 |
| XspI | CTAG | 1 cut(s) | 87 |