Rmu_sc0008316.1_g000009

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008316.1
OG0018811
Physical Location & Seq
Reverse (-)
20130 .. 20528
399 bp
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UTR
Exon/CDS
Intron
Rmu_sc0008316.1_g000009.1.cds

Sequence Viewer

Length: 399 bp
atgttgattttaccgcggagagctcgatggtcgtttcgagttcttcgatcattgtcatcctctgttagcatacccattgtagcttcatcaacctcatctctgggtttcgactcgtattttgaacccaataccagtgaccaagtatactccaacaaccggagaatgggccactttataaaatctggggacttgaacaatgcactcaacgtgttcgatgaaatgcctcggtatgatgttgtgacatataacttgcttatttcagggcatggccgatttgggcatcgagaactggcttttcggctctatactgatatggtttcacaaggaattagagagagtgcgtcgacgttttcttctgtgttggggacttgtactgatgcagggcttgcaaccacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28 PPR PPR_2

Protein Analysis

132

Amino Acids

14.71

Weight (kDa)

8.97

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018811)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03060 FvH4_3g03090
pyrus_communis pycom01g12300
rosa_laevigata RLG00000014597
rosa_multiflora Rmu_sc0008316.1_g000009
rosa_roxburghii Rroxscaffold_7G00205910 Rroxscaffold_7G00205970 Rroxscaffold_7G00205980
rosa_samantha Rh7DG423600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccI GTMKAC 2 cut(s) 144, 344
AccII CGCG 1 cut(s) 16
AciI CCGC 2 cut(s) 14, 16
AcoI YGGCCR 1 cut(s) 268
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 2 cut(s) 156, 163
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 2 cut(s) 122, 193
AluBI AGCT 2 cut(s) 23, 83
AluI AGCT 2 cut(s) 23, 83
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 2 cut(s) 166, 268
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 166
BmsI GCATC 2 cut(s) 289, 367
BsaJI CCNNGG 2 cut(s) 14, 224
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 163
Bse1I ACTGG 2 cut(s) 132, 294
BseDI CCNNGG 2 cut(s) 14, 224
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 156, 163
BseNI ACTGG 2 cut(s) 132, 294
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 168, 270
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 2 cut(s) 200, 379
BslI CCNNNNNNNGG 2 cut(s) 156, 163
BsmFI GGGAC 2 cut(s) 200, 379
BsnI GGCC 2 cut(s) 168, 270
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 47
BspACI CCGC 2 cut(s) 14, 16
BspANI GGCC 2 cut(s) 168, 270
BspFNI CGCG 1 cut(s) 16
BsrI ACTGG 2 cut(s) 132, 294
BssECI CCNNGG 2 cut(s) 14, 224
BssMI GATC 1 cut(s) 47
BssNAI GTATAC 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 145
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 16
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstUI CGCG 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 168, 270
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 166
Cfr42I CCGCGG 1 cut(s) 17
CseI GACGC 1 cut(s) 330
Csp6I GTAC 1 cut(s) 372
CviAII CATG 1 cut(s) 266
CviJI RGCY 7 cut(s) 23, 83, 168, 270, 293, 301, 385
CviKI_1 RGCY 7 cut(s) 23, 83, 168, 270, 293, 301, 385
CviQI GTAC 1 cut(s) 372
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 1 cut(s) 269
FaiI YATR 9 cut(s) 71, 145, 176, 231, 244, 246, 267, 306, 314
FaqI GGGAC 2 cut(s) 200, 379
FatI CATG 1 cut(s) 265
FblI GTMKAC 2 cut(s) 144, 344
FokI GGATG 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 25
HaeIII GGCC 2 cut(s) 168, 270
HapII CCGG 1 cut(s) 157
HgaI GACGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 269
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 145, 345
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 2 cut(s) 145, 345
Hpy99I CGWCG 2 cut(s) 346, 349
HpyCH4IV ACGT 2 cut(s) 207, 347
HpyCH4V TGCA 3 cut(s) 200, 380, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
HpySE526I ACGT 2 cut(s) 207, 347
Hsp92II CATG 1 cut(s) 269
KspI CCGCGG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 86, 145, 168, 170, 246, 275, 366
LweI GCATC 2 cut(s) 289, 367
MaeII ACGT 2 cut(s) 207, 347
MaeIII GTNAC 2 cut(s) 134, 238
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 2 cut(s) 35, 345
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 3 cut(s) 70, 103, 234
MseI TTAA 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 157
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 1 cut(s) 47
NlaIII CATG 1 cut(s) 269
NmuCI GTSAC 2 cut(s) 134, 238
PcsI WCGNNNNNNNCGW 1 cut(s) 43
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SacI GAGCTC 1 cut(s) 25
SacII CCGCGG 1 cut(s) 17
SalI GTCGAC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 397
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 25, 85, 95, 210, 350
SfaNI GCATC 2 cut(s) 289, 367
Sfr303I CCGCGG 1 cut(s) 17
SgrBI CCGCGG 1 cut(s) 17
SgrDI CGTCGACG 1 cut(s) 343
Sse9I AATT 1 cut(s) 327
SsiI CCGC 2 cut(s) 14, 16
SstI GAGCTC 1 cut(s) 25
TaiI ACGT 2 cut(s) 210, 350
TaqI TCGA 7 cut(s) 25, 37, 46, 108, 213, 283, 344
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 371
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 134, 238
Tsp45I GTSAC 2 cut(s) 134, 238
TspDTI ATGAA 2 cut(s) 75, 231
TspRI CASTG 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 144, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.