Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0018811

Physical Location & Seq

Genomic Coordinates Forward (+)

59856077 .. 59856403

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG423600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATGATGCATTCGGATTGTTGAGATCGATGGCATTGAAGGGTTTGGAGCCTAATTTGATTTTGTATAATGTGGTGATTATTGGGTTGTGTCGAGAAGGGAGGATGAGTGAGACTAGTCAGGTTGTTGAGGAGATGAAAAGAAAGGGTTTTGTTCCTGATGAGGTGACGAATAATACACTGATTAGTGGGTATTGCAAGCAAGGTAATTTTCACCAAGCACTTGTGTTGCAAGAGGAGATGCGGAGGAATGGCTTGTCTCCGAATGTTGTCACTTATACAGCATTGATCAATGCCATGTGTAAGGCTAGGAATTTGAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

8.53

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	14 - 47	1e-09	PPR repeat
PPR_2	PF13041	18 - 62	6.4e-12	PPR repeat family
PPR	PF01535	22 - 51	1e-06	PPR repeat
PPR_long	PF17177	39 - 107	5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	42 - 100	2.3e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	49 - 82	6.9e-11	PPR repeat
PPR_2	PF13041	53 - 102	7.2e-20	PPR repeat family
PPR	PF01535	59 - 86	2.6e-07	PPR repeat
PPR_1	PF12854	84 - 107	1.6e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018811)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03060 FvH4_3g03090
pyrus_communis	pycom01g12300
rosa_laevigata	RLG00000014597
rosa_multiflora	Rmu_sc0008316.1_g000009
rosa_roxburghii	Rroxscaffold_7G00205910 Rroxscaffold_7G00205970 Rroxscaffold_7G00205980
rosa_samantha	Rh7DG423600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	40, 319
AhlI	ACTAGT	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	107, 264
ApoI	RAATTY	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	88, 178, 206
BccI	CCATC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	107, 264
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	2 cut(s)	117, 309
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	231
Bsa29I	ATCGAT	2 cut(s)	29, 322
BsaXI	ACNNNNNCTCC	2 cut(s)	94, 124
BseCI	ATCGAT	2 cut(s)	29, 322
BseGI	GGATG	2 cut(s)	10, 111
BseRI	GAGGAG	2 cut(s)	146, 251
BshVI	ATCGAT	2 cut(s)	29, 322
BsmAI	GTCTC	2 cut(s)	107, 264
BsmI	GAATGC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	26, 288
BspACI	CCGC	1 cut(s)	244
BspDI	ATCGAT	2 cut(s)	29, 322
BspLI	GGNNCC	1 cut(s)	51
BssMI	GATC	2 cut(s)	26, 288
BstC8I	GCNNGC	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	10, 111
BstKTI	GATC	2 cut(s)	29, 291
BstMAI	GTCTC	2 cut(s)	107, 264
BstMBI	GATC	2 cut(s)	26, 288
Bsu15I	ATCGAT	2 cut(s)	29, 322
BsuTUI	ATCGAT	2 cut(s)	29, 322
BtsCI	GGATG	2 cut(s)	10, 111
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	200
ClaI	ATCGAT	2 cut(s)	29, 322
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	3 cut(s)	52, 255, 308
CviKI_1	RGCY	3 cut(s)	52, 255, 308
DpnI	GATC	2 cut(s)	28, 290
DpnII	GATC	2 cut(s)	26, 288
EcoT22I	ATGCAT	1 cut(s)	13
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	69, 279, 299
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	288
FokI	GGATG	2 cut(s)	17, 118
FspBI	CTAG	2 cut(s)	117, 309
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	3 cut(s)	88, 178, 206
Hpy188I	TCNGA	2 cut(s)	17, 264
Hpy188III	TCNNGA	2 cut(s)	95, 158
HpyAV	CCTTC	2 cut(s)	34, 92
HpyCH4V	TGCA	3 cut(s)	11, 198, 232
Hsp92II	CATG	1 cut(s)	301
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	26, 288
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	2 cut(s)	107, 171
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	117, 309
MaeIII	GTNAC	2 cut(s)	166, 271
MalI	GATC	2 cut(s)	28, 290
MboI	GATC	2 cut(s)	26, 288
MluCI	AATT	3 cut(s)	55, 208, 313
MnlI	CCTC	5 cut(s)	96, 124, 157, 229, 240
Mph1103I	ATGCAT	1 cut(s)	13
Mva1269I	GAATGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	26, 288
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	166, 271
NsiI	ATGCAT	1 cut(s)	13
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	26, 288
SetI	ASST	3 cut(s)	126, 168, 208
SfaNI	GCATC	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	3 cut(s)	55, 208, 313
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	2 cut(s)	117, 309
TaqI	TCGA	3 cut(s)	29, 94, 322
TasI	AATT	3 cut(s)	55, 208, 313
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	2 cut(s)	166, 271
Tsp45I	GTSAC	2 cut(s)	166, 271
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	1 cut(s)	313
XspI	CTAG	2 cut(s)	117, 309
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.