FvH4_3g04760

Alpha 1,4-glycosyltransferase conserved region

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2717467 .. 2718888
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04760.t1

Sequence Viewer

Length: 1422 bp
ATGCTACTCTCTGAAAGGCCCCCCAAGCTTGTCCGTCCCCTCATTATCTTCATCACCAAATTACAAGACCTGAGAAGATCAACACTTTCTGTTCTTCTCAACCTCCCAAGTTCTCTTCTTGCTTTGGTTCTCATTCTCCTTTTCGTCTACAACAGCTTCTATGTCTTCAGCATCATTCTCCCTTTTCCCGCCAAACCCCCGCCGGAGCCCGCCATTTTCTCGCCGCCTAATTATGCCGGAAAACCCTTCCCGAAGTGGGCACCTCCGTTTCGTTCTTCTCCATCGTCGAAGATTCAATCCTCTTCTGTTATGTATGTGGTGAAAGAGGAGAACGCACCCATGTTCTTGAAGAGCACAACCAGTTTGGCTTCTCTGCAAAACCCAACAAACTCGATCATGTCGAAATCCAAGTTTCAGAGGCCAAGAAGGTTCAAAAAACACAAGAGCAAGCTCAAGGCCATACCCATTGAGACTAAGCTGCCTCTGTTTCGGAGCCAATTCCCTACAAGAATGAGAGAGTTCTTTAGTGGAAACTCTTCTGGTTCTTCTTGCAAAACCAGGTTTTTCATGACTTGGATTTCGTCGAAGACTCTTGGAAATAGGGAATTGTTAGCTGTGGAGGGTGTGTTCAAATCCCACCCAAATGCTTGTTTGGTCATTGTCTCAAAGTCCTTGGATTCCAACAAGGGACTTGAAATTCTGAAGCCGTTTTTGGATTTGGGATATCGAGTAATGGCAATTGCTCCTGATTTTGACTACTTGTTCCACAATACTCCAGCTGAGGCTTGGTTTATTGGGTTGACGAAAGGCGATGTGAGACCTGGTGGAGTCTCAATTGGTCAGAACCTCTCCAATGTGCTTAGGCTTGCTTTGTTGTACAAGTTTGGTGGGATTTACTTAGACACAGATGTTATAGTGTTGAGGAGTTTGTCAAAGATGAAAAATGTGATTGGGGCGCAGACAGTTGACTTCCAAACTGGTAATTGGAGCCGATTGAACAATGCTGTGTTGGTTTTCGACAAGAATCATCCATTGCTCTTCAAGTTCATTCAGGAATTTGCTCTGACTTTTGATGGTAACAAATGGGGTCACAATGGACCTTACTTGGTCTCAAGGGTGGTTTCAAGGATCAGTCGAACACCAAACCCTGGTTTTAACTTTACTGTGGTAACTCCCTCGGCATTTTATCCGGTGCATTGGAGCCAGATTCAGAGTATTTTTCATGGTCCGAAAGATGATGTTCCCTCGAAATGGCTGCTTACAAAGTTGCAGCACATTCGTTCTCATAGCTTTGCATTGCACTTGTGGAATAGTCAGAGTAGAAGATTGAAGGTTCAGAAGGGCAGCATTATTGATCATATAATGTCAGATTTTACCATCTGTTACAATTCTTCTTCTGCAACTTCAAGTCTGTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

53.35

Weight (kDa)

10.21

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 200 - 321 4.6e-18 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 339 - 458 1.6e-25 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61050 AT1G61050
fragaria_vesca FvH4_3g04760
malus_domestica MD05G1317900.v1.1
prunus_persica Prupe.4G042800_v2.0.a1
pyrus_communis pycom05g29440
rosa_chinensis RchiOBHm_Chr5g0007781
rosa_laevigata RLG00000031488
rosa_multiflora Rmu_sc0005098.1_g000017
rosa_roxburghii Rroxscaffold_1G00068630
rosa_rugosa Rorug04G0430400
rosa_samantha Rh5AG058800 Rh5BG055500 Rh5CG065300 Rh5DG054500
rosa_wichuraiana Rw5G006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 259
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 1 cut(s) 147
AciI CCGC 4 cut(s) 189, 200, 210, 224
AclWI GGATC 1 cut(s) 1136
AcsI RAATTY 2 cut(s) 696, 1055
AcuI CTGAAG 2 cut(s) 151, 722
AfaI GTAC 1 cut(s) 878
AfiI CCNNNNNNNGG 3 cut(s) 256, 1148, 1251
AjnI CCWGG 3 cut(s) 557, 820, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AloI GAACNNNNNNTCC 2 cut(s) 611, 643
AluBI AGCT 7 cut(s) 28, 156, 451, 478, 614, 779, 1290
AluI AGCT 7 cut(s) 28, 156, 451, 478, 614, 779, 1290
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 5 cut(s) 464, 667, 811, 835, 1114
AlwI GGATC 1 cut(s) 1136
AoxI GGCC 3 cut(s) 17, 419, 456
ApeKI GCWGC 4 cut(s) 478, 1255, 1270, 1344
ApoI RAATTY 2 cut(s) 696, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 1 cut(s) 958
AspS9I GGNCC 3 cut(s) 18, 1097, 1226
AsuHPI GGTGA 2 cut(s) 46, 331
AvaII GGWCC 2 cut(s) 1097, 1226
BaeGI GKGCMC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 157, 593
Bbv12I GWGCWC 1 cut(s) 356
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 4 cut(s) 465, 1242, 1282, 1356
BccI CCATC 3 cut(s) 289, 1067, 1385
BceAI ACGGC 1 cut(s) 691
BcgI CGANNNNNNTGC 4 cut(s) 1237, 1259, 1271, 1293
BciT130I CCWGG 3 cut(s) 559, 822, 1149
BclI TGATCA 1 cut(s) 1354
BcoDI GTCTC 5 cut(s) 464, 667, 811, 835, 1114
BisI GCNGC 5 cut(s) 224, 479, 1256, 1271, 1345
BlsI GCNGC 5 cut(s) 225, 480, 1257, 1272, 1346
Bme1390I CCNGG 3 cut(s) 559, 822, 1149
Bme18I GGWCC 2 cut(s) 1097, 1226
BmgT120I GGNCC 3 cut(s) 18, 1097, 1226
BmiI GGNNCC 6 cut(s) 20, 207, 261, 494, 989, 1202
BmrFI CCNGG 3 cut(s) 559, 822, 1149
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 2 cut(s) 157, 593
BpmI CTGGAG 1 cut(s) 759
Bpu10I CCTNAGC 2 cut(s) 780, 860
BpuEI CTTGAG 2 cut(s) 437, 1096
BsaI GGTCTC 2 cut(s) 811, 1114
BsaJI CCNNGG 3 cut(s) 672, 1147, 1176
BsaWI WCCGGW 1 cut(s) 1189
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 1148, 1251
Bse1I ACTGG 2 cut(s) 360, 982
Bse3DI GCAATG 2 cut(s) 1031, 1295
BseBI CCWGG 3 cut(s) 559, 822, 1149
BseDI CCNNGG 3 cut(s) 672, 1147, 1176
BseGI GGATG 1 cut(s) 1027
BseLI CCNNNNNNNGG 3 cut(s) 256, 1148, 1251
BseMI GCAATG 2 cut(s) 1031, 1295
BseMII CTCAG 2 cut(s) 62, 771
BseNI ACTGG 2 cut(s) 360, 982
BseRI GAGGAG 2 cut(s) 341, 937
BseSI GKGCMC 1 cut(s) 262
BseXI GCAGC 4 cut(s) 465, 1242, 1282, 1356
BshFI GGCC 3 cut(s) 19, 421, 458
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 3 cut(s) 203, 237, 1190
BslFI GGGAC 2 cut(s) 21, 702
BslI CCNNNNNNNGG 3 cut(s) 256, 1148, 1251
BsmAI GTCTC 5 cut(s) 464, 667, 811, 835, 1114
BsmFI GGGAC 2 cut(s) 21, 702
BsnI GGCC 3 cut(s) 19, 421, 458
Bso31I GGTCTC 2 cut(s) 811, 1114
Bsp1286I GDGCHC 3 cut(s) 210, 262, 356
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 4 cut(s) 77, 393, 1128, 1354
BspACI CCGC 4 cut(s) 189, 200, 210, 224
BspANI GGCC 3 cut(s) 19, 421, 458
BspCNI CTCAG 2 cut(s) 63, 772
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 6 cut(s) 20, 207, 261, 494, 989, 1202
BspPI GGATC 1 cut(s) 1136
BspQI GCTCTTC 2 cut(s) 344, 1043
BspT107I GGYRCC 1 cut(s) 259
BspTNI GGTCTC 2 cut(s) 811, 1114
BsrDI GCAATG 2 cut(s) 1031, 1295
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 2 cut(s) 360, 982
BssECI CCNNGG 3 cut(s) 672, 1147, 1176
BssMI GATC 4 cut(s) 77, 393, 1128, 1354
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 3 cut(s) 559, 822, 1149
Bst4CI ACNGT 2 cut(s) 964, 1165
Bst6I CTCTTC 5 cut(s) 120, 307, 344, 541, 1043
BstAUI TGTACA 1 cut(s) 876
BstC8I GCNNGC 3 cut(s) 210, 449, 867
BstDEI CTNAG 5 cut(s) 71, 474, 780, 860, 898
BstF5I GGATG 1 cut(s) 1027
BstHHI GCGC 1 cut(s) 958
BstKTI GATC 4 cut(s) 80, 396, 1131, 1357
BstMAI GTCTC 5 cut(s) 464, 667, 811, 835, 1114
BstMBI GATC 4 cut(s) 77, 393, 1128, 1354
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 3 cut(s) 559, 822, 1149
BstSCI CCNGG 3 cut(s) 557, 820, 1147
BstSLI GKGCMC 1 cut(s) 262
BstV1I GCAGC 4 cut(s) 465, 1242, 1282, 1356
BstV2I GAAGAC 2 cut(s) 157, 593
BsuRI GGCC 3 cut(s) 19, 421, 458
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 1 cut(s) 1027
Cac8I GCNNGC 3 cut(s) 210, 449, 867
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 958
Cfr13I GGNCC 3 cut(s) 18, 1097, 1226
CsiI ACCWGGT 2 cut(s) 557, 820
Csp6I GTAC 1 cut(s) 877
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviAII CATG 4 cut(s) 340, 397, 568, 1223
CviQI GTAC 1 cut(s) 877
DdeI CTNAG 5 cut(s) 71, 474, 780, 860, 898
DpnI GATC 4 cut(s) 79, 395, 1130, 1356
DpnII GATC 4 cut(s) 77, 393, 1128, 1354
Eam1104I CTCTTC 5 cut(s) 120, 307, 344, 541, 1043
EarI CTCTTC 5 cut(s) 120, 307, 344, 541, 1043
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 2 cut(s) 811, 1114
Eco32I GATATC 1 cut(s) 725
Eco47I GGWCC 2 cut(s) 1097, 1226
Eco57I CTGAAG 2 cut(s) 151, 722
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 557, 820, 1147
EcoRV GATATC 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 4 cut(s) 343, 400, 571, 1226
FaqI GGGAC 2 cut(s) 21, 702
FatI CATG 4 cut(s) 339, 396, 567, 1222
FauI CCCGC 3 cut(s) 196, 207, 217
FbaI TGATCA 1 cut(s) 1354
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 5 cut(s) 224, 479, 1256, 1271, 1345
FokI GGATG 1 cut(s) 1014
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 5 cut(s) 224, 479, 1256, 1271, 1345
GlaI GCGC 1 cut(s) 957
GluI GCNGC 5 cut(s) 224, 479, 1256, 1271, 1345
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 3 cut(s) 19, 421, 458
HapII CCGG 3 cut(s) 203, 237, 1190
HhaI GCGC 1 cut(s) 958
Hin1II CATG 4 cut(s) 343, 400, 571, 1226
Hin6I GCGC 1 cut(s) 956
HinP1I GCGC 1 cut(s) 956
HincII GTYRAC 2 cut(s) 801, 967
HindII GTYRAC 2 cut(s) 801, 967
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 6 cut(s) 292, 589, 677, 828, 1024, 1207
HpaII CCGG 3 cut(s) 203, 237, 1190
HphI GGTGA 2 cut(s) 46, 331
Hpy166II GTNNAC 3 cut(s) 148, 801, 967
Hpy188III TCNNGA 5 cut(s) 250, 346, 568, 746, 1052
Hpy8I GTNNAC 3 cut(s) 148, 801, 967
Hpy99I CGWCG 2 cut(s) 289, 586
HpyAV CCTTC 4 cut(s) 256, 420, 1324, 1333
HpyCH4III ACNGT 2 cut(s) 964, 1165
HpyCH4V TGCA 7 cut(s) 376, 552, 1195, 1270, 1295, 1300, 1400
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 5 cut(s) 71, 474, 780, 860, 898
Hsp92II CATG 4 cut(s) 343, 400, 571, 1226
HspAI GCGC 1 cut(s) 956
Ksp22I TGATCA 1 cut(s) 1354
Kzo9I GATC 4 cut(s) 77, 393, 1128, 1354
LguI GCTCTTC 2 cut(s) 344, 1043
LmnI GCTCC 5 cut(s) 205, 492, 748, 987, 1200
Lsp1109I GCAGC 4 cut(s) 465, 1242, 1282, 1356
LweI GCATC 1 cut(s) 180
MabI ACCWGGT 2 cut(s) 557, 820
MaeIII GTNAC 4 cut(s) 1076, 1088, 1168, 1382
MalI GATC 4 cut(s) 79, 395, 1130, 1356
MboI GATC 4 cut(s) 77, 393, 1128, 1354
MfeI CAATTG 2 cut(s) 738, 834
MhlI GDGCHC 3 cut(s) 210, 262, 356
MlyI GAGTC 2 cut(s) 583, 837
MmeI TCCRAC 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 1 cut(s) 1155
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 779
MspI CCGG 3 cut(s) 203, 237, 1190
MspR9I CCNGG 3 cut(s) 559, 822, 1149
MunI CAATTG 2 cut(s) 738, 834
MvaI CCWGG 3 cut(s) 559, 822, 1149
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 4 cut(s) 77, 393, 1128, 1354
NlaIII CATG 4 cut(s) 343, 400, 571, 1226
NlaIV GGNNCC 6 cut(s) 20, 207, 261, 494, 989, 1202
NmeAIII GCCGAG 1 cut(s) 1157
NmuCI GTSAC 1 cut(s) 1088
PagI TCATGA 1 cut(s) 567
PciSI GCTCTTC 2 cut(s) 344, 1043
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 4 cut(s) 292, 677, 1024, 1207
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 5 cut(s) 225, 480, 1257, 1272, 1346
PleI GAGTC 2 cut(s) 583, 836
PpsI GAGTC 2 cut(s) 583, 836
Psp6I CCWGG 3 cut(s) 557, 820, 1147
PspGI CCWGG 3 cut(s) 557, 820, 1147
PspN4I GGNNCC 6 cut(s) 20, 207, 261, 494, 989, 1202
PspPI GGNCC 3 cut(s) 18, 1097, 1226
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 1 cut(s) 878
RsaNI GTAC 1 cut(s) 877
RseI CAYNNNNRTG 1 cut(s) 642
SapI GCTCTTC 2 cut(s) 344, 1043
SaqAI TTAA 1 cut(s) 1155
SatI GCNGC 5 cut(s) 224, 479, 1256, 1271, 1345
Sau3AI GATC 4 cut(s) 77, 393, 1128, 1354
Sau96I GGNCC 3 cut(s) 18, 1097, 1226
SchI GAGTC 2 cut(s) 583, 837
ScrFI CCNGG 3 cut(s) 559, 822, 1149
SduI GDGCHC 3 cut(s) 210, 262, 356
SexAI ACCWGGT 2 cut(s) 557, 820
SfaNI GCATC 1 cut(s) 180
SinI GGWCC 2 cut(s) 1097, 1226
SmiMI CAYNNNNRTG 1 cut(s) 642
SmlI CTYRAG 2 cut(s) 452, 1111
SmoI CTYRAG 2 cut(s) 452, 1111
SsiI CCGC 4 cut(s) 189, 200, 210, 224
StyD4I CCNGG 3 cut(s) 557, 820, 1147
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 964, 1165
TaqI TCGA 8 cut(s) 287, 392, 401, 584, 727, 1017, 1135, 1247
TatI WGTACW 1 cut(s) 876
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 4 cut(s) 292, 677, 1024, 1207
Tru1I TTAA 1 cut(s) 1155
Tru9I TTAA 1 cut(s) 1155
TseFI GTSAC 1 cut(s) 1088
TseI GCWGC 4 cut(s) 478, 1255, 1270, 1344
Tsp45I GTSAC 1 cut(s) 1088
TspDTI ATGAA 5 cut(s) 40, 556, 953, 1036, 1211
TspGWI ACGGA 2 cut(s) 23, 255
Van91I CCANNNNNTGG 1 cut(s) 1148
VpaK11BI GGWCC 2 cut(s) 1097, 1226
XapI RAATTY 2 cut(s) 696, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 783
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.