Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015496

Physical Location & Seq

Genomic Coordinates Reverse (-)

4989543 .. 4991125

Gene Structure 1583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTATGTGGTGAAAGAAGAAAACGCACCCATGTTCTTGAAGAGCACAACCCATTTGGCCTCTCTGCAAAACCCAACAAACTCAATGATACCCATTTTGAAATCTAAGTTTCAGAGGTCAAGAAAGTTCAGAAAACACAAGCGCAAGCTCAAAGCCATACCCATTGAGACGAAGTTGCCTCCGTCTCAGAGTCAATTCCCAACAAGAATGAGAGAGTTCTTGAGTGGAAACTCTTCTGGTTCTTCTTGCAAAATCAGGTTTTTCATGACTTGGATTTCATCCAAGACTCTTGGAAATAGGGAGTTGTTAGCTGTGGAGAGTGTGTTCAAATCCCACCCAAATGCTTGTTTGGTCATAGTCTCAAATTCTCTGGATTCCTACAAGGGACTTGAAATCCTGAAGCCGTTTTCGGATTTGGGCTTTCGAGTAATGGCAATTGCTCCTGATTTTGATTACTTGTTCCACAATACTCCTGCTGAGGCTTGGTTTTTTGGGTTGAGAAAAGGCAATGTGAGACCTGGTGGAGTCTCAATTGGTCAGAACCTCTCCAATGTGCTTAGGCTTGCTTTGTTGTACAAGTTTGGTGGGATTTACTTGGACACAGATGTTATAGTGTTAAGGAGTTTGTCAAAGATGAAAAATGTGATTGGGGCTCAGACAATTGACCTCAAAACCGGTAATTGGAGCCGATTGAACAATGCTGTGTTGGTGTTCGACAAGAATCATCCATTACTCTTCAAGTTCATTCAGGAATTTGCTCTGACTTTTGATGGTAACAAATGGGGTCACAATGGACCTTACTTGGTCTCAAGAGTGGTTTCAAGGATCAGTGAAAAACCAAACCCTGGTTTTAACTTTACTGTGGTAACTCCCTCGGCATTTTATCCGGTGAATTGGAGCCGTATTCGGAGTATTTTTTGTGGTCCGAAAGATGAGGTATACTCGAAATGGCTGCTTACAAAGCTGAAGCATATTAGATCTCATAGTTTTGCATTGCACTTGTGGAATAGTCAGAGTAGAAGACTGAAGGTTCAGAAGGGAAGCATTATTGATCATATAATGTCAGATTTTACCATCTGTTACAATTCTTCCTCTGCAACTTCAAGCTTGTCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00601 ko00603 ko01100 map00601 map00603 map01100

Pfam Domains

Protein Families

Gb3_synth Gly_transf_sug

Protein Analysis

372

Amino Acids

42.24

Weight (kDa)

10.16

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gly_transf_sug	PF04488	99 - 219	2.5e-19	Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth	PF04572	238 - 357	7.9e-25	Alpha 1,4-glycosyltransferase conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61050 AT1G61050
fragaria_vesca	FvH4_3g04760
malus_domestica	MD05G1317900.v1.1
prunus_persica	Prupe.4G042800_v2.0.a1
pyrus_communis	pycom05g29440
rosa_chinensis	RchiOBHm_Chr5g0007781
rosa_laevigata	RLG00000031488
rosa_multiflora	Rmu_sc0005098.1_g000017
rosa_roxburghii	Rroxscaffold_1G00068630
rosa_rugosa	Rorug04G0430400
rosa_samantha	Rh5AG058800 Rh5BG055500 Rh5CG065300 Rh5DG054500
rosa_wichuraiana	Rw5G006100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	845
AccI	GTMKAC	1 cut(s)	939
AclWI	GGATC	1 cut(s)	833
AcsI	RAATTY	2 cut(s)	364, 752
AcuI	CTGAAG	3 cut(s)	419, 986, 1046
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	681, 845
AgeI	ACCGGT	1 cut(s)	674
AgsI	TTSAA	8 cut(s)	40, 100, 328, 392, 694, 739, 822, 1104
AjnI	CCWGG	2 cut(s)	517, 844
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	4 cut(s)	148, 311, 964, 1107
AluI	AGCT	4 cut(s)	148, 311, 964, 1107
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	6 cut(s)	161, 189, 364, 508, 532, 811
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	952
ApoI	RAATTY	2 cut(s)	364, 752
AsiGI	ACCGGT	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	794, 923
AsuHPI	GGTGA	2 cut(s)	22, 901
AvaII	GGWCC	2 cut(s)	794, 923
BanII	GRGCYC	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	1027
Bbv12I	GWGCWC	1 cut(s)	47
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	939
BccI	CCATC	2 cut(s)	764, 1082
BceAI	ACGGC	2 cut(s)	388, 885
BcgI	CGANNNNNNTGC	2 cut(s)	934, 968
BciT130I	CCWGG	2 cut(s)	519, 846
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	6 cut(s)	161, 189, 364, 508, 532, 811
BglII	AGATCT	1 cut(s)	977
BisI	GCNGC	1 cut(s)	953
BlsI	GCNGC	1 cut(s)	954
Bme1390I	CCNGG	2 cut(s)	519, 846
Bme18I	GGWCC	2 cut(s)	794, 923
BmgT120I	GGNCC	2 cut(s)	794, 923
BmiI	GGNNCC	2 cut(s)	686, 899
BmrFI	CCNGG	2 cut(s)	519, 846
BpiI	GAAGAC	1 cut(s)	1027
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
Bpu10I	CCTNAGC	2 cut(s)	477, 557
BpuEI	CTTGAG	2 cut(s)	241, 793
BsaI	GGTCTC	2 cut(s)	508, 811
BsaJI	CCNNGG	2 cut(s)	844, 873
BsaWI	WCCGGW	2 cut(s)	674, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	2 cut(s)	681, 845
Bse118I	RCCGGY	1 cut(s)	674
Bse3DI	GCAATG	2 cut(s)	514, 992
BseBI	CCWGG	2 cut(s)	519, 846
BseDI	CCNNGG	2 cut(s)	844, 873
BseGI	GGATG	2 cut(s)	278, 724
BseLI	CCNNNNNNNGG	2 cut(s)	681, 845
BseMI	GCAATG	2 cut(s)	514, 992
BseMII	CTCAG	3 cut(s)	200, 468, 668
BseXI	GCAGC	1 cut(s)	939
BshFI	GGCC	1 cut(s)	59
BshTI	ACCGGT	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	675, 887
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	681, 845
BsmAI	GTCTC	6 cut(s)	161, 189, 364, 508, 532, 811
BsmBI	CGTCTC	2 cut(s)	161, 189
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	2 cut(s)	508, 811
Bsp1286I	GDGCHC	2 cut(s)	47, 655
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	825, 977, 1051
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	199, 469, 667
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	686, 899
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	1 cut(s)	35
BspTNI	GGTCTC	2 cut(s)	508, 811
BsrDI	GCAATG	2 cut(s)	514, 992
BsrFI	RCCGGY	1 cut(s)	674
BsrGI	TGTACA	1 cut(s)	573
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	844, 873
BssMI	GATC	3 cut(s)	825, 977, 1051
BssNAI	GTATAC	1 cut(s)	940
Bst1107I	GTATAC	1 cut(s)	940
Bst2UI	CCWGG	2 cut(s)	519, 846
Bst4CI	ACNGT	1 cut(s)	862
Bst6I	CTCTTC	3 cut(s)	35, 238, 740
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	2 cut(s)	146, 564
BstDEI	CTNAG	5 cut(s)	105, 186, 477, 557, 654
BstF5I	GGATG	2 cut(s)	278, 724
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	3 cut(s)	828, 980, 1054
BstMAI	GTCTC	6 cut(s)	161, 189, 364, 508, 532, 811
BstMBI	GATC	3 cut(s)	825, 977, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	961
BstNI	CCWGG	2 cut(s)	519, 846
BstSCI	CCNGG	2 cut(s)	517, 844
BstV1I	GCAGC	1 cut(s)	939
BstV2I	GAAGAC	1 cut(s)	1027
BstX2I	RGATCY	1 cut(s)	977
BstYI	RGATCY	1 cut(s)	977
BstZ17I	GTATAC	1 cut(s)	940
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	278, 724
BtsIMutI	CAGTG	1 cut(s)	835
Cac8I	GCNNGC	2 cut(s)	146, 564
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	794, 923
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	574
CspAI	ACCGGT	1 cut(s)	674
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	2 cut(s)	31, 265
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	5 cut(s)	105, 186, 477, 557, 654
DpnI	GATC	3 cut(s)	827, 979, 1053
DpnII	GATC	3 cut(s)	825, 977, 1051
Eam1104I	CTCTTC	3 cut(s)	35, 238, 740
EarI	CTCTTC	3 cut(s)	35, 238, 740
Eco24I	GRGCYC	1 cut(s)	655
Eco31I	GGTCTC	2 cut(s)	508, 811
Eco47I	GGWCC	2 cut(s)	794, 923
Eco57I	CTGAAG	3 cut(s)	419, 986, 1046
EcoRII	CCWGG	2 cut(s)	517, 844
EcoT38I	GRGCYC	1 cut(s)	655
Esp3I	CGTCTC	2 cut(s)	161, 189
FaeI	CATG	2 cut(s)	34, 268
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	2 cut(s)	30, 264
FbaI	TGATCA	1 cut(s)	1051
FblI	GTMKAC	1 cut(s)	939
Fnu4HI	GCNGC	1 cut(s)	953
FokI	GGATG	2 cut(s)	265, 711
FriOI	GRGCYC	1 cut(s)	655
Fsp4HI	GCNGC	1 cut(s)	953
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	953
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	675, 887
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	34, 268
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	1105
HinfI	GANTC	5 cut(s)	190, 286, 374, 525, 721
HpaII	CCGG	2 cut(s)	675, 887
HphI	GGTGA	2 cut(s)	22, 901
Hpy166II	GTNNAC	1 cut(s)	940
Hpy188III	TCNNGA	9 cut(s)	37, 120, 220, 265, 371, 397, 443, 749, 810
Hpy8I	GTNNAC	1 cut(s)	940
HpyAV	CCTTC	2 cut(s)	1021, 1030
HpyCH4III	ACNGT	1 cut(s)	862
HpyCH4V	TGCA	5 cut(s)	67, 249, 992, 997, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	961
HpyF3I	CTNAG	5 cut(s)	105, 186, 477, 557, 654
Hsp92II	CATG	2 cut(s)	34, 268
HspAI	GCGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	3 cut(s)	825, 977, 1051
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	3 cut(s)	445, 684, 897
Lsp1109I	GCAGC	1 cut(s)	939
MabI	ACCWGGT	1 cut(s)	517
MaeIII	GTNAC	4 cut(s)	773, 785, 865, 1079
MalI	GATC	3 cut(s)	827, 979, 1053
MboI	GATC	3 cut(s)	825, 977, 1051
MboII	GAAGA	7 cut(s)	29, 52, 225, 234, 727, 1032, 1080
MfeI	CAATTG	3 cut(s)	435, 531, 660
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	2 cut(s)	47, 655
MluCI	AATT	9 cut(s)	194, 364, 435, 531, 660, 679, 752, 892, 1084
MlyI	GAGTC	3 cut(s)	199, 280, 534
MnlI	CCTC	9 cut(s)	70, 108, 189, 472, 554, 677, 883, 928, 1102
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	2 cut(s)	617, 852
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	2 cut(s)	675, 887
MspR9I	CCNGG	2 cut(s)	519, 846
MunI	CAATTG	3 cut(s)	435, 531, 660
MvaI	CCWGG	2 cut(s)	519, 846
MwoI	GCNNNNNNNGC	1 cut(s)	961
NdeII	GATC	3 cut(s)	825, 977, 1051
NlaIII	CATG	2 cut(s)	34, 268
NlaIV	GGNNCC	2 cut(s)	686, 899
NmeAIII	GCCGAG	1 cut(s)	854
NmuCI	GTSAC	1 cut(s)	785
PagI	TCATGA	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	374, 721
PflMI	CCANNNNNTGG	1 cut(s)	845
PinAI	ACCGGT	1 cut(s)	674
PkrI	GCNGC	1 cut(s)	954
PleI	GAGTC	3 cut(s)	198, 280, 533
PpsI	GAGTC	3 cut(s)	198, 280, 533
Psp6I	CCWGG	2 cut(s)	517, 844
PspGI	CCWGG	2 cut(s)	517, 844
PspN4I	GGNNCC	2 cut(s)	686, 899
PspPI	GGNCC	2 cut(s)	794, 923
PsuI	RGATCY	1 cut(s)	977
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	617, 852
SatI	GCNGC	1 cut(s)	953
Sau3AI	GATC	3 cut(s)	825, 977, 1051
Sau96I	GGNCC	2 cut(s)	794, 923
SchI	GAGTC	3 cut(s)	199, 280, 534
ScrFI	CCNGG	2 cut(s)	519, 846
SduI	GDGCHC	2 cut(s)	47, 655
SexAI	ACCWGGT	1 cut(s)	517
SinI	GGWCC	2 cut(s)	794, 923
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	220, 808
SmoI	CTYRAG	2 cut(s)	220, 808
Sse9I	AATT	9 cut(s)	194, 364, 435, 531, 660, 679, 752, 892, 1084
StyD4I	CCNGG	2 cut(s)	517, 844
TaaI	ACNGT	1 cut(s)	862
TaqI	TCGA	3 cut(s)	424, 714, 944
TasI	AATT	9 cut(s)	194, 364, 435, 531, 660, 679, 752, 892, 1084
TatI	WGTACW	1 cut(s)	573
TfiI	GAWTC	2 cut(s)	374, 721
Tru1I	TTAA	2 cut(s)	617, 852
Tru9I	TTAA	2 cut(s)	617, 852
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	952
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	4 cut(s)	253, 267, 650, 733
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	835
Van91I	CCANNNNNTGG	1 cut(s)	845
VpaK11BI	GGWCC	2 cut(s)	794, 923
XapI	RAATTY	2 cut(s)	364, 752
XmiI	GTMKAC	1 cut(s)	939
XmnI	GAANNNNTTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.