Rroxscaffold_1G00068630

Alpha 1,4-glycosyltransferase conserved region

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
89768664 .. 89770090
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068630.1

Sequence Viewer

Length: 1353 bp
ATGCTTGACTCTGAAAAAACCCCCAAACTTCTCAGTCCCCTCATTATCTTCATCACCCAATTGCAAGACTTTAGAAGATCAACACTCTCTGTTCTTCTAAGCCTACCTAGTTCTCTTCTTGCTCTGTTTCTCATTCTCCTTTTGGTCTACAACAGCTTCTATGTCTTCTGTATAACTCTCCCTTTTCCCGCCAAACCCCCGCCAGAACCCGCCAATTTCTCGCCGCCAAGTCTCGCCGGAAAACCCTTCCCAAAACGGGCTCCTCCCTTTCGCTCTTCTTCTTCATCAAACCTTCAGTCTTCTTCTGTTATGTATGTGGTCAAAGAAGAAAACGCACCTATGTTCTTGAAGAGCACAACCCATTTGGCCTCCCTGCAAAACCCAACAAACTCAATGATACCCATTTTGAAATCTAAGTTTCAGAGGTCAAGAAGGTTCAGAAAACACAAGCGCAAGTTCAAAGCCATACCCATTGAGACGAAGTTGCCTCTGTCTCAGAGTCAATTCCCAACAAGAATGAGAGAGTTCTTTAGTGGAAACTCTTCTGGTTCTTCTTGCAACATCAGGTTTTTCATGACTTGGATTTCATCCAAGTCTCTTGGAAATAGGGAATTGTGTGCTGTGGAGAGTGTGTTCAAATCCCACCCAAATGCTTGTTTGGTCATAGTCTCAAGTTCTCTGGATTCCTACAAGGGACTTCAAATCCTGAAGCCGTTTTCGGATTTAGGCTTTCGAGTAATGGCAATTGCTCCTGATTTTGATTACTTGTTCCACAATACTCCTGCTGAGGCTTGGCTTGCTTTGTTGTACAAGTTTGGTGGGATTTACCTGGACACAGATGTTTTAGTGTTAAGGAGTTTGTCAAAGATGAAAAATGTGATTGGGGCTCAGACAATTGACCTCAAAACCGGTAATTGGAGCCGATTGAACAATGCGGTGTTGGTGTTCGACAAGAATCATCCATTACTCTTCAAGTTCATTCAGGAATTTGCTCTGACTTTTGATGGTAACAAATGGGGTCACAATGGACCTTACTTGGTCTCAAGAGTGGTTTCAAGGATCAGTGAAAAACCAAACCCTGGTTTTAACTTTACTGTGGTAACTCCCTCGGCATTTTATCCGGTGAATTGGAGCCGTATTGGGAGTATTTTTCGTGGTCCGAAAGATGAGGTTTACTCGAAATGGCTGCTTACAAAGCTGAAGCATATTAGATCTCATAGCTTTGCATTGCACTTGTGGAATAGTCAGAGTAGAAGACTGAAGGTTCAGAAGGGAAGCATTATTGATCATATAATGTCAGATTTTACCATCTGTTACAATTCTTCTTCTGCAACTTCAAGCTTGCCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

450

Amino Acids

50.9

Weight (kDa)

10.07

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 202 - 297 2.6e-11 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 316 - 435 7.1e-25 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61050 AT1G61050
fragaria_vesca FvH4_3g04760
malus_domestica MD05G1317900.v1.1
prunus_persica Prupe.4G042800_v2.0.a1
pyrus_communis pycom05g29440
rosa_chinensis RchiOBHm_Chr5g0007781
rosa_laevigata RLG00000031488
rosa_multiflora Rmu_sc0005098.1_g000017
rosa_roxburghii Rroxscaffold_1G00068630
rosa_rugosa Rorug04G0430400
rosa_samantha Rh5AG058800 Rh5BG055500 Rh5CG065300 Rh5DG054500
rosa_wichuraiana Rw5G006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 147
AciI CCGC 5 cut(s) 189, 200, 210, 224, 935
AclWI GGATC 1 cut(s) 1067
AcsI RAATTY 1 cut(s) 986
AcuI CTGAAG 4 cut(s) 278, 728, 1220, 1280
AfaI GTAC 1 cut(s) 809
AfiI CCNNNNNNNGG 3 cut(s) 256, 915, 1079
AgeI ACCGGT 1 cut(s) 908
AgsI TTSAA 9 cut(s) 349, 409, 460, 637, 701, 928, 973, 1056, 1338
AjnI CCWGG 2 cut(s) 828, 1078
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 4 cut(s) 156, 1198, 1221, 1341
AluI AGCT 4 cut(s) 156, 1198, 1221, 1341
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 6 cut(s) 236, 470, 498, 600, 673, 1045
AlwI GGATC 1 cut(s) 1067
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 1186
ApoI RAATTY 1 cut(s) 986
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AsiGI ACCGGT 1 cut(s) 908
Asp700I GAANNNNTTC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 1028, 1157
AsuHPI GGTGA 2 cut(s) 46, 1135
AvaII GGWCC 2 cut(s) 1028, 1157
BanII GRGCYC 2 cut(s) 262, 889
BbsI GAAGAC 3 cut(s) 157, 291, 1261
Bbv12I GWGCWC 1 cut(s) 356
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 1 cut(s) 1173
BccI CCATC 2 cut(s) 998, 1316
BceAI ACGGC 2 cut(s) 697, 1119
BcgI CGANNNNNNTGC 2 cut(s) 1168, 1202
BciT130I CCWGG 2 cut(s) 830, 1080
BclI TGATCA 1 cut(s) 1285
BcoDI GTCTC 6 cut(s) 236, 470, 498, 600, 673, 1045
BfaI CTAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 1211
BisI GCNGC 2 cut(s) 224, 1187
BlsI GCNGC 2 cut(s) 225, 1188
Bme1390I CCNGG 2 cut(s) 830, 1080
Bme18I GGWCC 2 cut(s) 1028, 1157
BmgT120I GGNCC 2 cut(s) 1028, 1157
BmiI GGNNCC 3 cut(s) 261, 920, 1133
BmrFI CCNGG 2 cut(s) 830, 1080
BpiI GAAGAC 3 cut(s) 157, 291, 1261
BplI GAGNNNNNCTC 2 cut(s) 1160, 1192
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 655, 1027
BsaI GGTCTC 1 cut(s) 1045
BsaJI CCNNGG 2 cut(s) 1078, 1107
BsaWI WCCGGW 2 cut(s) 908, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 915, 1079
Bse118I RCCGGY 1 cut(s) 908
Bse3DI GCAATG 1 cut(s) 1226
BseBI CCWGG 2 cut(s) 830, 1080
BseDI CCNNGG 2 cut(s) 1078, 1107
BseGI GGATG 2 cut(s) 587, 958
BseLI CCNNNNNNNGG 3 cut(s) 256, 915, 1079
BseMI GCAATG 1 cut(s) 1226
BseMII CTCAG 4 cut(s) 46, 509, 777, 902
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 1173
BshFI GGCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 908
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 3 cut(s) 237, 909, 1121
BslFI GGGAC 2 cut(s) 21, 708
BslI CCNNNNNNNGG 3 cut(s) 256, 915, 1079
BsmAI GTCTC 6 cut(s) 236, 470, 498, 600, 673, 1045
BsmBI CGTCTC 1 cut(s) 470
BsmFI GGGAC 2 cut(s) 21, 708
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 1045
Bsp1286I GDGCHC 3 cut(s) 262, 356, 889
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 4 cut(s) 77, 1059, 1211, 1285
BspACI CCGC 5 cut(s) 189, 200, 210, 224, 935
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 4 cut(s) 45, 508, 778, 901
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 3 cut(s) 261, 920, 1133
BspPI GGATC 1 cut(s) 1067
BspQI GCTCTTC 2 cut(s) 280, 344
BspTNI GGTCTC 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 1226
BsrFI RCCGGY 1 cut(s) 908
BsrGI TGTACA 1 cut(s) 807
BssAI RCCGGY 1 cut(s) 908
BssECI CCNNGG 2 cut(s) 1078, 1107
BssMI GATC 4 cut(s) 77, 1059, 1211, 1285
Bst2UI CCWGG 2 cut(s) 830, 1080
Bst4CI ACNGT 1 cut(s) 1096
Bst6I CTCTTC 5 cut(s) 120, 280, 344, 547, 974
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 798, 1343
BstDEI CTNAG 6 cut(s) 32, 98, 414, 495, 786, 888
BstF5I GGATG 2 cut(s) 587, 958
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 4 cut(s) 80, 1062, 1214, 1288
BstMAI GTCTC 6 cut(s) 236, 470, 498, 600, 673, 1045
BstMBI GATC 4 cut(s) 77, 1059, 1211, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 797, 1195
BstNI CCWGG 2 cut(s) 830, 1080
BstSCI CCNGG 2 cut(s) 828, 1078
BstV1I GCAGC 1 cut(s) 1173
BstV2I GAAGAC 3 cut(s) 157, 291, 1261
BstX2I RGATCY 1 cut(s) 1211
BstYI RGATCY 1 cut(s) 1211
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 587, 958
BtsIMutI CAGTG 1 cut(s) 1069
Cac8I GCNNGC 2 cut(s) 798, 1343
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 908
Cfr13I GGNCC 2 cut(s) 1028, 1157
Csp6I GTAC 1 cut(s) 808
CspAI ACCGGT 1 cut(s) 908
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 1 cut(s) 574
CviQI GTAC 1 cut(s) 808
DdeI CTNAG 6 cut(s) 32, 98, 414, 495, 786, 888
DpnI GATC 4 cut(s) 79, 1061, 1213, 1287
DpnII GATC 4 cut(s) 77, 1059, 1211, 1285
Eam1104I CTCTTC 5 cut(s) 120, 280, 344, 547, 974
EarI CTCTTC 5 cut(s) 120, 280, 344, 547, 974
Eco24I GRGCYC 2 cut(s) 262, 889
Eco31I GGTCTC 1 cut(s) 1045
Eco47I GGWCC 2 cut(s) 1028, 1157
Eco57I CTGAAG 4 cut(s) 278, 728, 1220, 1280
EcoRII CCWGG 2 cut(s) 828, 1078
EcoT38I GRGCYC 2 cut(s) 262, 889
Esp3I CGTCTC 1 cut(s) 470
FaeI CATG 1 cut(s) 577
FaqI GGGAC 2 cut(s) 21, 708
FatI CATG 1 cut(s) 573
FauI CCCGC 3 cut(s) 196, 207, 217
FbaI TGATCA 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 224, 1187
FokI GGATG 2 cut(s) 574, 945
FriOI GRGCYC 2 cut(s) 262, 889
Fsp4HI GCNGC 2 cut(s) 224, 1187
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 452
GluI GCNGC 2 cut(s) 224, 1187
HaeIII GGCC 1 cut(s) 368
HapII CCGG 3 cut(s) 237, 909, 1121
HhaI GCGC 1 cut(s) 453
Hin1II CATG 1 cut(s) 577
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 1339
HinfI GANTC 4 cut(s) 8, 499, 683, 955
HpaII CCGG 3 cut(s) 237, 909, 1121
HphI GGTGA 2 cut(s) 46, 1135
Hpy166II GTNNAC 2 cut(s) 148, 1174
Hpy188III TCNNGA 8 cut(s) 346, 429, 574, 680, 706, 752, 983, 1044
Hpy8I GTNNAC 2 cut(s) 148, 1174
HpyAV CCTTC 5 cut(s) 256, 302, 426, 1255, 1264
HpyCH4III ACNGT 1 cut(s) 1096
HpyCH4V TGCA 6 cut(s) 64, 376, 558, 1226, 1231, 1331
HpyF10VI GCNNNNNNNGC 2 cut(s) 797, 1195
HpyF3I CTNAG 6 cut(s) 32, 98, 414, 495, 786, 888
Hsp92II CATG 1 cut(s) 577
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 1285
Kzo9I GATC 4 cut(s) 77, 1059, 1211, 1285
LguI GCTCTTC 2 cut(s) 280, 344
LmnI GCTCC 4 cut(s) 265, 754, 918, 1131
Lsp1109I GCAGC 1 cut(s) 1173
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 4 cut(s) 1007, 1019, 1099, 1313
MalI GATC 4 cut(s) 79, 1061, 1213, 1287
MboI GATC 4 cut(s) 77, 1059, 1211, 1285
MfeI CAATTG 3 cut(s) 59, 744, 894
MflI RGATCY 1 cut(s) 1211
MhlI GDGCHC 3 cut(s) 262, 356, 889
MlyI GAGTC 2 cut(s) 2, 508
MnlI CCTC 9 cut(s) 50, 273, 379, 417, 498, 781, 911, 1117, 1162
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 2 cut(s) 851, 1086
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 3 cut(s) 237, 909, 1121
MspR9I CCNGG 2 cut(s) 830, 1080
MunI CAATTG 3 cut(s) 59, 744, 894
MvaI CCWGG 2 cut(s) 830, 1080
MwoI GCNNNNNNNGC 2 cut(s) 797, 1195
NdeII GATC 4 cut(s) 77, 1059, 1211, 1285
NlaIII CATG 1 cut(s) 577
NlaIV GGNNCC 3 cut(s) 261, 920, 1133
NmeAIII GCCGAG 1 cut(s) 1088
NmuCI GTSAC 1 cut(s) 1019
PagI TCATGA 1 cut(s) 573
PciSI GCTCTTC 2 cut(s) 280, 344
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 683, 955
PflMI CCANNNNNTGG 1 cut(s) 1079
PinAI ACCGGT 1 cut(s) 908
PkrI GCNGC 2 cut(s) 225, 1188
PleI GAGTC 2 cut(s) 2, 507
PpsI GAGTC 2 cut(s) 2, 507
Psp6I CCWGG 2 cut(s) 828, 1078
PspGI CCWGG 2 cut(s) 828, 1078
PspN4I GGNNCC 3 cut(s) 261, 920, 1133
PspPI GGNCC 2 cut(s) 1028, 1157
PsuI RGATCY 1 cut(s) 1211
RsaI GTAC 1 cut(s) 809
RsaNI GTAC 1 cut(s) 808
RseI CAYNNNNRTG 1 cut(s) 648
SapI GCTCTTC 2 cut(s) 280, 344
SaqAI TTAA 2 cut(s) 851, 1086
SatI GCNGC 2 cut(s) 224, 1187
Sau3AI GATC 4 cut(s) 77, 1059, 1211, 1285
Sau96I GGNCC 2 cut(s) 1028, 1157
SchI GAGTC 2 cut(s) 2, 508
ScrFI CCNGG 2 cut(s) 830, 1080
SduI GDGCHC 3 cut(s) 262, 356, 889
SinI GGWCC 2 cut(s) 1028, 1157
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 670, 1042
SmoI CTYRAG 2 cut(s) 670, 1042
SsiI CCGC 5 cut(s) 189, 200, 210, 224, 935
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 828, 1078
TaaI ACNGT 1 cut(s) 1096
TaqI TCGA 3 cut(s) 733, 948, 1178
TatI WGTACW 1 cut(s) 807
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 2 cut(s) 683, 955
Tru1I TTAA 2 cut(s) 851, 1086
Tru9I TTAA 2 cut(s) 851, 1086
TscAI CASTG 1 cut(s) 1069
TseFI GTSAC 1 cut(s) 1019
TseI GCWGC 1 cut(s) 1186
Tsp45I GTSAC 1 cut(s) 1019
TspDTI ATGAA 6 cut(s) 40, 273, 562, 576, 884, 967
TspRI CASTG 1 cut(s) 1069
Van91I CCANNNNNTGG 1 cut(s) 1079
VpaK11BI GGWCC 2 cut(s) 1028, 1157
XapI RAATTY 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.