Prupe.4G042800_v2.0.a1

Alpha 1,4-glycosyltransferase conserved region

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
2020923 .. 2022326
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G042800.1

Sequence Viewer

Length: 1404 bp
ATGTTTGATGATGAAAGTCCCAAACTTCCTAACCCACTCATTGTCTTTATCAACCAATTGCAATACTTAAAAAGATCGATACTTTCCGTTCTTCTTAGCTTGCCCACTTCTCTTCTTGCTCTGCTTCTCCTTCTCCTTTTGGCCTACAATGGCTTCTATGTCTTCTGTATTTACCTTCCTCTTTCCAAGCCCTCGCCGGACCCTGCCATTTTCTCCCCGGGAAATCTCGCCGGGGATTCTGTAAGTAATTGGGTTCCTGCGCATGTTTCTTCTTCTTCTTCAAGTTCAAAAATTTCTTCTTCTGTGATGTATGTGGTGAAGGAAGAAAATGCGCCTATGTTCTTAAAGACCCATTTGCCTCCTCTGCACAACCCAAGAAATTCAATGGTACCCATCCCAAAATTTTCACTCCAAAGGCCAAGGCGGATCAGAAAACACAAGCGCAAGCTCAAAAGCTTACCCCCTGAACCAAAACTCTCTCTGTTTTCAACAAGAATGAGAGACTTCTTTGCTGGTAACTCCTCTTCTTGTAAAGTCAGGTTCTTTATGACTTGGATTTCGTTCAAGACTTTTGGAAACAGGGAATTGCTGGCTGTGGAGAGCTTGTTCAAGTTCCATCCAAATGCTTGTTTGGCCATAGTCTCAAATTCGCTGGATTCAGAGAAAGGAAGTCAAATTTTGAGGCCATTCTCGGAAATGGATTTCAGGGTAATGGCAATTTCTCCAGACTTTGATTACTTATTCAAGAACACTCCAGCAGAAGCTTGGTATAGTGAGCTAAGGACAGGGAAAGTGAATCCTGGTGGAGTTTCTTTGGGTCAAAATCTCTCTAATTTGCTTAGGCTTGCTTTGTTGTATAAGTTTGGTGGTATTTATTTAGACACAGATGTTATAGTGCTAAAGAGTTTGTCAAAGTTGAGAAATGTGATTGGAGCTCAGGCAATTGATGCCCAAACTGGGAATTGGAGCAGACTGAATAATGCTGTGTTGGTATTTGATAAGAACCATCCATTGATCTTCAAGTTTATCCAAGAATTTGCTCTCACATTTGATGGGAACAAGTGGGGTCACAATGGCCCTTACTTGGTTTCAAGGGTGGTTTCAAGAGTGAGAGAAAATCCAAAAAACCCAGGTTTTAATTTCACTGTCTTAACACCCTCAGCGTTCTATCCGTTTAACTGGAGCCGAATTCGGAGTCTCTTTCGGGGTCCTAAAGATGAGCTTCATTCAAAATGGTTACTTGCAAAGCTGAGGCATATTTGTTCTCAAAGCTTTGCACTGCATTTGTGGAACAGCCAGAGTAGACGGCTGAATGTTGAGAAGGGAAGCATTATTGATCATCTAATGTCAGAATTTTCAATCTTTCCCAATTCTTCAGCTTCAAGCTCTGTCAAGATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

52.85

Weight (kDa)

9.94

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61050 AT1G61050
fragaria_vesca FvH4_3g04760
malus_domestica MD05G1317900.v1.1
prunus_persica Prupe.4G042800_v2.0.a1
pyrus_communis pycom05g29440
rosa_chinensis RchiOBHm_Chr5g0007781
rosa_laevigata RLG00000031488
rosa_multiflora Rmu_sc0005098.1_g000017
rosa_roxburghii Rroxscaffold_1G00068630
rosa_rugosa Rorug04G0430400
rosa_samantha Rh5AG058800 Rh5BG055500 Rh5CG065300 Rh5DG054500
rosa_wichuraiana Rw5G006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 261
Acc65I GGTACC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 1303
AciI CCGC 1 cut(s) 424
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 8 cut(s) 291, 379, 401, 646, 675, 1034, 1188, 1352
AcuI CTGAAG 1 cut(s) 1359
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 2 cut(s) 957, 1084
AjnI CCWGG 2 cut(s) 799, 1129
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 3 cut(s) 495, 646, 1202
AlwI GGATC 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 5 cut(s) 141, 416, 633, 683, 1075
ApoI RAATTY 8 cut(s) 291, 379, 401, 646, 675, 1034, 1188, 1352
ArsI GACNNNNNNTTYG 4 cut(s) 541, 573, 1180, 1212
Asp718I GGTACC 1 cut(s) 388
AspLEI GCGC 3 cut(s) 262, 334, 444
AspS9I GGNCC 3 cut(s) 199, 1076, 1208
AsuC2I CCSGG 3 cut(s) 218, 219, 232
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 2 cut(s) 199, 1208
BalI TGGCCA 1 cut(s) 635
BanI GGYRCC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 937
BarI GAAGNNNNNNTAC 2 cut(s) 508, 540
BbsI GAAGAC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 937
BbvCI CCTCAGC 2 cut(s) 1159, 1250
BccI CCATC 4 cut(s) 401, 624, 1014, 1046
BceAI ACGGC 1 cut(s) 1322
BciT130I CCWGG 2 cut(s) 801, 1131
BclI TGATCA 1 cut(s) 1336
BcnI CCSGG 3 cut(s) 218, 219, 232
BcoDI GTCTC 3 cut(s) 495, 646, 1202
Bme1390I CCNGG 5 cut(s) 218, 219, 232, 801, 1131
Bme18I GGWCC 2 cut(s) 199, 1208
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 199, 1076, 1208
BmiI GGNNCC 5 cut(s) 201, 255, 390, 1184, 1209
BmrFI CCNGG 5 cut(s) 218, 219, 232, 801, 1131
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 1 cut(s) 937
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 154
BpmI CTGGAG 3 cut(s) 708, 738, 1201
Bpu10I CCTNAGC 5 cut(s) 779, 839, 936, 1159, 1250
BpuMI CCSGG 3 cut(s) 218, 219, 232
Bsa29I ATCGAT 1 cut(s) 77
BsaJI CCNNGG 5 cut(s) 216, 217, 231, 419, 1129
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 957, 1084
Bse1I ACTGG 2 cut(s) 961, 1184
BseBI CCWGG 2 cut(s) 801, 1131
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 5 cut(s) 216, 217, 231, 419, 1129
BseGI GGATG 3 cut(s) 393, 616, 1006
BseLI CCNNNNNNNGG 2 cut(s) 957, 1084
BseMII CTCAG 3 cut(s) 950, 1173, 1241
BseNI ACTGG 2 cut(s) 961, 1184
BseRI GAGGAG 2 cut(s) 351, 511
BsgI GTGCAG 1 cut(s) 350
BshFI GGCC 5 cut(s) 143, 418, 635, 685, 1077
BshNI GGYRCC 1 cut(s) 388
BshVI ATCGAT 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 937
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 3 cut(s) 197, 218, 231
BslFI GGGAC 1 cut(s) 3
BslI CCNNNNNNNGG 2 cut(s) 957, 1084
BsmAI GTCTC 3 cut(s) 495, 646, 1202
BsmFI GGGAC 1 cut(s) 3
BsnI GGCC 5 cut(s) 143, 418, 635, 685, 1077
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 937
Bsp143I GATC 4 cut(s) 74, 426, 1014, 1336
BspACI CCGC 1 cut(s) 424
BspANI GGCC 5 cut(s) 143, 418, 635, 685, 1077
BspCNI CTCAG 3 cut(s) 949, 1172, 1242
BspDI ATCGAT 1 cut(s) 77
BspLI GGNNCC 5 cut(s) 201, 255, 390, 1184, 1209
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 388
BsrI ACTGG 2 cut(s) 961, 1184
BssECI CCNNGG 5 cut(s) 216, 217, 231, 419, 1129
BssMI GATC 4 cut(s) 74, 426, 1014, 1336
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 801, 1131
Bst4CI ACNGT 1 cut(s) 1147
Bst6I CTCTTC 2 cut(s) 117, 529
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 4 cut(s) 101, 446, 591, 846
BstDEI CTNAG 6 cut(s) 95, 779, 839, 936, 1159, 1250
BstF5I GGATG 3 cut(s) 393, 616, 1006
BstHHI GCGC 3 cut(s) 262, 334, 444
BstKTI GATC 4 cut(s) 77, 429, 1017, 1339
BstMAI GTCTC 3 cut(s) 495, 646, 1202
BstMBI GATC 4 cut(s) 74, 426, 1014, 1336
BstMWI GCNNNNNNNGC 3 cut(s) 364, 632, 947
BstNI CCWGG 2 cut(s) 801, 1131
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 5 cut(s) 216, 217, 230, 799, 1129
BstV2I GAAGAC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 5 cut(s) 143, 418, 635, 685, 1077
BsuTUI ATCGAT 1 cut(s) 77
BtsCI GGATG 3 cut(s) 393, 616, 1006
BtsI GCAGTG 1 cut(s) 1277
BtsIMutI CAGTG 2 cut(s) 1143, 1277
Cac8I GCNNGC 4 cut(s) 101, 446, 591, 846
CfoI GCGC 3 cut(s) 262, 334, 444
Cfr13I GGNCC 3 cut(s) 199, 1076, 1208
Cfr9I CCCGGG 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 77
Csp6I GTAC 1 cut(s) 389
CviAII CATG 1 cut(s) 263
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 6 cut(s) 95, 779, 839, 936, 1159, 1250
DpnI GATC 4 cut(s) 76, 428, 1016, 1338
DpnII GATC 4 cut(s) 74, 426, 1014, 1336
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 117, 529
EarI CTCTTC 2 cut(s) 117, 529
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 935
Eco130I CCWWGG 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 937
Eco47I GGWCC 2 cut(s) 199, 1208
Eco53kI GAGCTC 1 cut(s) 935
Eco57I CTGAAG 1 cut(s) 1359
Eco88I CYCGRG 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 935
EcoO109I RGGNCCY 1 cut(s) 1208
EcoRI GAATTC 1 cut(s) 1188
EcoRII CCWGG 2 cut(s) 799, 1129
EcoT14I CCWWGG 1 cut(s) 419
EcoT38I GRGCYC 1 cut(s) 937
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 1 cut(s) 266
FalI AAGNNNNNCTT 2 cut(s) 1206, 1238
FaqI GGGAC 1 cut(s) 3
FatI CATG 1 cut(s) 262
FbaI TGATCA 1 cut(s) 1336
FblI GTMKAC 1 cut(s) 1303
FokI GGATG 3 cut(s) 380, 603, 993
FriOI GRGCYC 1 cut(s) 937
FspI TGCGCA 1 cut(s) 261
GlaI GCGC 3 cut(s) 261, 333, 443
GsuI CTGGAG 3 cut(s) 708, 738, 1201
HaeIII GGCC 5 cut(s) 143, 418, 635, 685, 1077
HapII CCGG 3 cut(s) 197, 218, 231
HhaI GCGC 3 cut(s) 262, 334, 444
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 3 cut(s) 260, 332, 442
HinP1I GCGC 3 cut(s) 260, 332, 442
HindIII AAGCTT 3 cut(s) 454, 762, 1270
HinfI GANTC 4 cut(s) 236, 656, 796, 1195
HpaII CCGG 3 cut(s) 197, 218, 231
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 1 cut(s) 1304
Hpy188I TCNGA 5 cut(s) 431, 661, 694, 1194, 1351
Hpy188III TCNNGA 5 cut(s) 565, 725, 745, 1104, 1393
Hpy8I GTNNAC 1 cut(s) 1304
HpyAV CCTTC 4 cut(s) 140, 185, 313, 1315
HpyCH4III ACNGT 1 cut(s) 1147
HpyCH4V TGCA 5 cut(s) 61, 367, 1244, 1277, 1282
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 632, 947
HpyF3I CTNAG 6 cut(s) 95, 779, 839, 936, 1159, 1250
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 3 cut(s) 260, 332, 442
KpnI GGTACC 1 cut(s) 392
Ksp22I TGATCA 1 cut(s) 1336
Kzo9I GATC 4 cut(s) 74, 426, 1014, 1336
LmnI GCTCC 3 cut(s) 932, 966, 1182
LweI GCATC 1 cut(s) 937
MaeIII GTNAC 3 cut(s) 515, 1067, 1236
MalI GATC 4 cut(s) 76, 428, 1016, 1338
MboI GATC 4 cut(s) 74, 426, 1014, 1336
MfeI CAATTG 2 cut(s) 56, 942
MhlI GDGCHC 1 cut(s) 937
MlsI TGGCCA 1 cut(s) 635
MluNI TGGCCA 1 cut(s) 635
MlyI GAGTC 1 cut(s) 1204
MnlI CCTC 8 cut(s) 189, 202, 369, 372, 532, 675, 1168, 1245
Mox20I TGGCCA 1 cut(s) 635
MscI TGGCCA 1 cut(s) 635
MseI TTAA 5 cut(s) 68, 344, 1137, 1151, 1176
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 635
MspI CCGG 3 cut(s) 197, 218, 231
MspR9I CCNGG 5 cut(s) 218, 219, 232, 801, 1131
MunI CAATTG 2 cut(s) 56, 942
MvaI CCWGG 2 cut(s) 801, 1131
MwoI GCNNNNNNNGC 3 cut(s) 364, 632, 947
NciI CCSGG 3 cut(s) 218, 219, 232
NdeII GATC 4 cut(s) 74, 426, 1014, 1336
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 5 cut(s) 201, 255, 390, 1184, 1209
NmuCI GTSAC 1 cut(s) 1067
NsbI TGCGCA 1 cut(s) 261
NspI RCATGY 1 cut(s) 266
PfeI GAWTC 3 cut(s) 236, 656, 796
PleI GAGTC 1 cut(s) 1203
PpsI GAGTC 1 cut(s) 1203
PpuMI RGGWCCY 1 cut(s) 1208
Psp124BI GAGCTC 1 cut(s) 937
Psp5II RGGWCCY 1 cut(s) 1208
Psp6I CCWGG 2 cut(s) 799, 1129
PspGI CCWGG 2 cut(s) 799, 1129
PspN4I GGNNCC 5 cut(s) 201, 255, 390, 1184, 1209
PspPI GGNCC 3 cut(s) 199, 1076, 1208
PspPPI RGGWCCY 1 cut(s) 1208
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 621
SacI GAGCTC 1 cut(s) 937
SaqAI TTAA 5 cut(s) 68, 344, 1137, 1151, 1176
Sau3AI GATC 4 cut(s) 74, 426, 1014, 1336
Sau96I GGNCC 3 cut(s) 199, 1076, 1208
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 5 cut(s) 218, 219, 232, 801, 1131
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 1 cut(s) 937
SinI GGWCC 2 cut(s) 199, 1208
SmaI CCCGGG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 621
SsiI CCGC 1 cut(s) 424
SstI GAGCTC 1 cut(s) 937
StyD4I CCNGG 5 cut(s) 216, 217, 230, 799, 1129
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 1147
TaqI TCGA 1 cut(s) 77
TfiI GAWTC 3 cut(s) 236, 656, 796
Tru1I TTAA 5 cut(s) 68, 344, 1137, 1151, 1176
Tru9I TTAA 5 cut(s) 68, 344, 1137, 1151, 1176
TscAI CASTG 2 cut(s) 1150, 1284
TseFI GTSAC 1 cut(s) 1067
Tsp45I GTSAC 1 cut(s) 1067
TspDTI ATGAA 2 cut(s) 27, 1214
TspGWI ACGGA 2 cut(s) 76, 1161
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 2 cut(s) 1150, 1284
VpaK11BI GGWCC 2 cut(s) 199, 1208
XapI RAATTY 8 cut(s) 291, 379, 401, 646, 675, 1034, 1188, 1352
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 762
XmaI CCCGGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.