Rh5BG055500

Alpha 1,4-glycosyltransferase conserved region

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
4522757 .. 4524841
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG055500.1

Sequence Viewer

Length: 1428 bp
ATGCTTGACCCTGAAAAAACCCCCAAACTTCTCAGTCCCCTCATTGTCTTCATCACCCAATTGCAAGACTTTAGAAGATCAACACTCTCTGTTCTTCTAAGCCTACCCAGTTCTCTTCTTGCTCTGTTTCTCATTCTCCTTTTGGTCTACAACAGCTTCTATGTCTTCTGTGTAACTCTCCCTTTTCCCGCCAATCCCCCGCCGGAACCCGCCAATTTCTCGCCGCCAAGTCTCGCCGGAGAACCCTTCCCAAAATGGGCTCCTCCCTTTCGCTCTTCTTCTTCATCAAAGCTTCAGTCTTCTTCTGTTATGTATGTGGTGAAAGAAGAAAACGCACCCATGTTCTTGAAGAACACAACCCATTTGGCCTCTCTGCAAAACCCAACAAACTCAATGATACCCATATTGAAATCTAAGTTTCAGAGGTCAAGAAGGTTCAGAAAACACAAGCGCAAGCTCAAAGCCATACCCATTGAGGCGAAGTTGCCTCTGTCTCAGAGTCAATTCCCAACAAGAATGAGAGAGTTCTTTAGTGGAAACTCTTCTGGTTCTTCTTGCAAAATCAGGTTTTTCATGACTTGGATTTCATCCAAGACTCTTGGAAATAGGGAATTGTTAGCTGTGGAGAGTGTGTTCAAATCCCACCCAAATGCTTGTTTGGTCATAGTCTCAAATTCTCTGGATTCCTACAAGGGACTTCAAATCCTGAAGCCGTTTTCGGATTTGGGCTTTCGAGTAATGGCAATTGCTCCTGATTTTGATTACTTGTTCCACAATACTCCTGCTGAGGCTTGGTTTTTTGGGTTGAGAAAAGGCAATGTGAGACCTGGTGGAGTCTCAATTGGTCAGAACCTCTCCAATGTGCTTAGGCTTGCTTTGTTGTACAAGTTTGGTGGGATTTACTTGGACACAGATGTTATAGTGTTAAGGAGTTTGTCAAAGATGAAAAATGTGATTGGGGCTCAGACAATTGACCTCAAAACCGGTAATTGGAGCCGATTGAACAATGCTGTGTTGGTGTTCGACAAGAATCATCCATTACTCTTCAAGTTCATTCAGGAATTTGCTCTGACTTTTGATGGTAACAAATGGGGTCACAATGGACCTTACTTGGTCTCAAGAGTGGTTTCAAGGATCAGTGAAAAACCAAACCCTGGTTTTAACTTTACTGTGGTAACTCCCTCGGCATTTTATCCGGTGAATTGGAGCCATATTCGGAGTATTTTTTGTGGTCCGAAAGATGAGGTTTACTCGAAATGGCTGCTTACAAAGCTGAAGCATATTAGATCTCATAGCTTTGCATTGCACTTGTGGAATAGTCAGAGTAGAAGACTGAAGGTTCAGAAGGGAAGCATTATTGATCATATAATGTCAGATTTTACCATCTGTTACAATTCTTCTTCTGCAACTTCAAGCTTGTCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.62

Weight (kDa)

10.08

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gly_transf_sug PF04488 202 - 322 4.4e-19 Glycosyltransferase sugar-binding region containing DXD motif
Gb3_synth PF04572 341 - 460 1.7e-24 Alpha 1,4-glycosyltransferase conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61050 AT1G61050
fragaria_vesca FvH4_3g04760
malus_domestica MD05G1317900.v1.1
prunus_persica Prupe.4G042800_v2.0.a1
pyrus_communis pycom05g29440
rosa_chinensis RchiOBHm_Chr5g0007781
rosa_laevigata RLG00000031488
rosa_multiflora Rmu_sc0005098.1_g000017
rosa_roxburghii Rroxscaffold_1G00068630
rosa_rugosa Rorug04G0430400
rosa_samantha Rh5AG058800 Rh5BG055500 Rh5CG065300 Rh5DG054500
rosa_wichuraiana Rw5G006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1154
AccI GTMKAC 1 cut(s) 147
AciI CCGC 4 cut(s) 189, 200, 210, 224
AclWI GGATC 1 cut(s) 1142
AcsI RAATTY 2 cut(s) 673, 1061
AcuI CTGAAG 4 cut(s) 278, 728, 1295, 1355
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 3 cut(s) 256, 990, 1154
AgeI ACCGGT 1 cut(s) 983
AgsI TTSAA 8 cut(s) 349, 409, 637, 701, 1003, 1048, 1131, 1413
AjnI CCWGG 2 cut(s) 826, 1153
AloI GAACNNNNNNTCC 2 cut(s) 617, 649
AluBI AGCT 7 cut(s) 156, 292, 457, 620, 1273, 1296, 1416
AluI AGCT 7 cut(s) 156, 292, 457, 620, 1273, 1296, 1416
Alw26I GTCTC 6 cut(s) 236, 498, 673, 817, 841, 1120
AlwI GGATC 1 cut(s) 1142
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 1261
ApoI RAATTY 2 cut(s) 673, 1061
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AsiGI ACCGGT 1 cut(s) 983
Asp700I GAANNNNTTC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 2 cut(s) 1103, 1232
AsuHPI GGTGA 3 cut(s) 46, 331, 1210
AvaII GGWCC 2 cut(s) 1103, 1232
BanII GRGCYC 2 cut(s) 262, 964
BbsI GAAGAC 4 cut(s) 40, 157, 291, 1336
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 1 cut(s) 1248
BccI CCATC 2 cut(s) 1073, 1391
BceAI ACGGC 1 cut(s) 697
BcgI CGANNNNNNTGC 2 cut(s) 1243, 1277
BciT130I CCWGG 2 cut(s) 828, 1155
BclI TGATCA 1 cut(s) 1360
BcoDI GTCTC 6 cut(s) 236, 498, 673, 817, 841, 1120
BglII AGATCT 1 cut(s) 1286
BisI GCNGC 2 cut(s) 224, 1262
BlsI GCNGC 2 cut(s) 225, 1263
Bme1390I CCNGG 2 cut(s) 828, 1155
Bme18I GGWCC 2 cut(s) 1103, 1232
BmgT120I GGNCC 2 cut(s) 1103, 1232
BmiI GGNNCC 4 cut(s) 207, 261, 995, 1208
BmrFI CCNGG 2 cut(s) 828, 1155
BmrI ACTGGG 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 102
BpiI GAAGAC 4 cut(s) 40, 157, 291, 1336
BplI GAGNNNNNCTC 2 cut(s) 1235, 1267
Bpu10I CCTNAGC 2 cut(s) 786, 866
BpuEI CTTGAG 1 cut(s) 1102
BsaI GGTCTC 2 cut(s) 817, 1120
BsaJI CCNNGG 2 cut(s) 1153, 1182
BsaWI WCCGGW 2 cut(s) 983, 1195
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 990, 1154
Bse118I RCCGGY 1 cut(s) 983
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 2 cut(s) 823, 1301
BseBI CCWGG 2 cut(s) 828, 1155
BseDI CCNNGG 2 cut(s) 1153, 1182
BseGI GGATG 2 cut(s) 587, 1033
BseLI CCNNNNNNNGG 3 cut(s) 256, 990, 1154
BseMI GCAATG 2 cut(s) 823, 1301
BseMII CTCAG 4 cut(s) 46, 509, 777, 977
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 1 cut(s) 1248
BshFI GGCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 983
BsiSI CCGG 4 cut(s) 203, 237, 984, 1196
BslFI GGGAC 2 cut(s) 21, 708
BslI CCNNNNNNNGG 3 cut(s) 256, 990, 1154
BsmAI GTCTC 6 cut(s) 236, 498, 673, 817, 841, 1120
BsmFI GGGAC 2 cut(s) 21, 708
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 2 cut(s) 817, 1120
Bsp1286I GDGCHC 2 cut(s) 262, 964
Bsp1407I TGTACA 1 cut(s) 882
Bsp143I GATC 4 cut(s) 77, 1134, 1286, 1360
BspACI CCGC 4 cut(s) 189, 200, 210, 224
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 4 cut(s) 45, 508, 778, 976
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 4 cut(s) 207, 261, 995, 1208
BspPI GGATC 1 cut(s) 1142
BspQI GCTCTTC 1 cut(s) 280
BspTNI GGTCTC 2 cut(s) 817, 1120
BsrDI GCAATG 2 cut(s) 823, 1301
BsrFI RCCGGY 1 cut(s) 983
BsrGI TGTACA 1 cut(s) 882
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 983
BssECI CCNNGG 2 cut(s) 1153, 1182
BssMI GATC 4 cut(s) 77, 1134, 1286, 1360
Bst2UI CCWGG 2 cut(s) 828, 1155
Bst4CI ACNGT 1 cut(s) 1171
Bst6I CTCTTC 4 cut(s) 120, 280, 547, 1049
BstAUI TGTACA 1 cut(s) 882
BstC8I GCNNGC 2 cut(s) 455, 873
BstDEI CTNAG 7 cut(s) 32, 98, 414, 495, 786, 866, 963
BstF5I GGATG 2 cut(s) 587, 1033
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 4 cut(s) 80, 1137, 1289, 1363
BstMAI GTCTC 6 cut(s) 236, 498, 673, 817, 841, 1120
BstMBI GATC 4 cut(s) 77, 1134, 1286, 1360
BstMWI GCNNNNNNNGC 1 cut(s) 1270
BstNI CCWGG 2 cut(s) 828, 1155
BstSCI CCNGG 2 cut(s) 826, 1153
BstV1I GCAGC 1 cut(s) 1248
BstV2I GAAGAC 4 cut(s) 40, 157, 291, 1336
BstX2I RGATCY 1 cut(s) 1286
BstYI RGATCY 1 cut(s) 1286
BsuRI GGCC 1 cut(s) 368
BtsCI GGATG 2 cut(s) 587, 1033
BtsIMutI CAGTG 1 cut(s) 1144
Cac8I GCNNGC 2 cut(s) 455, 873
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 983
Cfr13I GGNCC 2 cut(s) 1103, 1232
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 1 cut(s) 883
CspAI ACCGGT 1 cut(s) 983
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 2 cut(s) 340, 574
CviQI GTAC 1 cut(s) 883
DdeI CTNAG 7 cut(s) 32, 98, 414, 495, 786, 866, 963
DpnI GATC 4 cut(s) 79, 1136, 1288, 1362
DpnII GATC 4 cut(s) 77, 1134, 1286, 1360
Eam1104I CTCTTC 4 cut(s) 120, 280, 547, 1049
EarI CTCTTC 4 cut(s) 120, 280, 547, 1049
Eco24I GRGCYC 2 cut(s) 262, 964
Eco31I GGTCTC 2 cut(s) 817, 1120
Eco47I GGWCC 2 cut(s) 1103, 1232
Eco57I CTGAAG 4 cut(s) 278, 728, 1295, 1355
EcoRII CCWGG 2 cut(s) 826, 1153
EcoT38I GRGCYC 2 cut(s) 262, 964
FaeI CATG 2 cut(s) 343, 577
FaqI GGGAC 2 cut(s) 21, 708
FatI CATG 2 cut(s) 339, 573
FauI CCCGC 3 cut(s) 196, 207, 217
FbaI TGATCA 1 cut(s) 1360
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 224, 1262
FokI GGATG 2 cut(s) 574, 1020
FriOI GRGCYC 2 cut(s) 262, 964
Fsp4HI GCNGC 2 cut(s) 224, 1262
GlaI GCGC 1 cut(s) 452
GluI GCNGC 2 cut(s) 224, 1262
HaeIII GGCC 1 cut(s) 368
HapII CCGG 4 cut(s) 203, 237, 984, 1196
HhaI GCGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 343, 577
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HindIII AAGCTT 2 cut(s) 290, 1414
HinfI GANTC 5 cut(s) 499, 595, 683, 834, 1030
HpaII CCGG 4 cut(s) 203, 237, 984, 1196
HphI GGTGA 3 cut(s) 46, 331, 1210
Hpy166II GTNNAC 2 cut(s) 148, 1249
Hpy188III TCNNGA 8 cut(s) 346, 429, 574, 680, 706, 752, 1058, 1119
Hpy8I GTNNAC 2 cut(s) 148, 1249
HpyAV CCTTC 4 cut(s) 256, 426, 1330, 1339
HpyCH4III ACNGT 1 cut(s) 1171
HpyCH4V TGCA 6 cut(s) 64, 376, 558, 1301, 1306, 1406
HpyF10VI GCNNNNNNNGC 1 cut(s) 1270
HpyF3I CTNAG 7 cut(s) 32, 98, 414, 495, 786, 866, 963
Hsp92II CATG 2 cut(s) 343, 577
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 1360
Kzo9I GATC 4 cut(s) 77, 1134, 1286, 1360
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 4 cut(s) 265, 754, 993, 1206
Lsp1109I GCAGC 1 cut(s) 1248
MabI ACCWGGT 1 cut(s) 826
MaeIII GTNAC 5 cut(s) 172, 1082, 1094, 1174, 1388
MalI GATC 4 cut(s) 79, 1136, 1288, 1362
MboI GATC 4 cut(s) 77, 1134, 1286, 1360
MfeI CAATTG 4 cut(s) 59, 744, 840, 969
MflI RGATCY 1 cut(s) 1286
MhlI GDGCHC 2 cut(s) 262, 964
MlyI GAGTC 3 cut(s) 508, 589, 843
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 2 cut(s) 926, 1161
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 4 cut(s) 203, 237, 984, 1196
MspR9I CCNGG 2 cut(s) 828, 1155
MunI CAATTG 4 cut(s) 59, 744, 840, 969
MvaI CCWGG 2 cut(s) 828, 1155
MwoI GCNNNNNNNGC 1 cut(s) 1270
NdeII GATC 4 cut(s) 77, 1134, 1286, 1360
NlaIII CATG 2 cut(s) 343, 577
NlaIV GGNNCC 4 cut(s) 207, 261, 995, 1208
NmeAIII GCCGAG 1 cut(s) 1163
NmuCI GTSAC 1 cut(s) 1094
PagI TCATGA 1 cut(s) 573
PciSI GCTCTTC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 683, 1030
PflMI CCANNNNNTGG 1 cut(s) 1154
PinAI ACCGGT 1 cut(s) 983
PkrI GCNGC 2 cut(s) 225, 1263
PleI GAGTC 3 cut(s) 507, 589, 842
PpsI GAGTC 3 cut(s) 507, 589, 842
Psp6I CCWGG 2 cut(s) 826, 1153
PspGI CCWGG 2 cut(s) 826, 1153
PspN4I GGNNCC 4 cut(s) 207, 261, 995, 1208
PspPI GGNCC 2 cut(s) 1103, 1232
PsuI RGATCY 1 cut(s) 1286
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
RseI CAYNNNNRTG 1 cut(s) 648
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 926, 1161
SatI GCNGC 2 cut(s) 224, 1262
Sau3AI GATC 4 cut(s) 77, 1134, 1286, 1360
Sau96I GGNCC 2 cut(s) 1103, 1232
SchI GAGTC 3 cut(s) 508, 589, 843
ScrFI CCNGG 2 cut(s) 828, 1155
SduI GDGCHC 2 cut(s) 262, 964
SexAI ACCWGGT 1 cut(s) 826
SinI GGWCC 2 cut(s) 1103, 1232
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 1117
SmoI CTYRAG 1 cut(s) 1117
SsiI CCGC 4 cut(s) 189, 200, 210, 224
StyD4I CCNGG 2 cut(s) 826, 1153
TaaI ACNGT 1 cut(s) 1171
TaqI TCGA 3 cut(s) 733, 1023, 1253
TatI WGTACW 1 cut(s) 882
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 2 cut(s) 683, 1030
Tru1I TTAA 2 cut(s) 926, 1161
Tru9I TTAA 2 cut(s) 926, 1161
TscAI CASTG 1 cut(s) 1144
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 1 cut(s) 1261
Tsp45I GTSAC 1 cut(s) 1094
TspDTI ATGAA 6 cut(s) 40, 273, 562, 576, 959, 1042
TspRI CASTG 1 cut(s) 1144
Van91I CCANNNNNTGG 1 cut(s) 1154
VpaK11BI GGWCC 2 cut(s) 1103, 1232
XapI RAATTY 2 cut(s) 673, 1061
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.