Rorug04G0430400

Alpha 1,4-glycosyltransferase conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015496
Physical Location & Seq
Forward (+)
58909628 .. 58911149
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0430400.1

Sequence Viewer

Length: 930 bp
ATGCAAGCTATTTCGGTTCCGGTTTCGTCTCCGAGTTTGGATTCTTACGTCAATTCAAAGAACAATTTCGAATACTCGCAGCTCTCTGCGAATTTCACCGCTAGTGTCAAAGTCTCAGAGGACGTAAAACGCACAGCTTCAGGTGAGGAAGAGAAGCCAGAGAAGGAAGCTCAAAATGACGTCGCTGCTGCTGTAGATGAGGACGAGATAGAAGTAGAAGAAGAGGAAGAGGAGTTCTCGTTTTTCTGCACGAATCCCGACGGATCACCGATTTCCGCCGACGACGCGTTCCAGGACGGCCAGATCCGGCCGGTGTATCCGATTTTCAACCGGGATCTCCTCTTCGCCGACGCCTACGACGGCGATTCTTCTTCCCGCCAGAAAGAGGCTTCCTCTTCTTCGTCTCTAAGGCCGCCATTGAAAAAGCTCTTCTTCGAAGACCGCGACGCTCCATCGTCGTCGGCCTCCGAATCCGACGAGCTCGAAGCCGTCCCGGAGGGAAGCTACTGCGAGTGGTCCAAGAACGCCAAGGAAGTCTCGCCGGAGCTCCGAAACAACAAGAGCAATTCCACCGGGTCCTCCAAGCTCTGGAGAATCAGGGACTTGGTTCCTCGGAGCAACAGCGACGGCAAGGACGCGTTCGTGTTCCTGAACCCTAATTCGGCGACCCTGAAGCAAAATCAAGCAGCGGCGGCGGCGGCGGTGGCCGCGAAGGCCGCTAAGAGCGTAAAGCCGGTGGAGAAAGCTCAGGGGCAAAAGGTTAAAAAGGCCGAAACGGTGTCGTCGGCGCACGAGAAGCATTACGTGATGAACAGAGCGAAGAAGGAAGGGGATAAACGACGGTCGTATTTGCCTTACAGGCCGGGGGTGGTCGGTTTCGGGTTCTTCACCAATGTGAACGGGTTGAGCAGAAATGTTCATCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00601 ko00603 ko01100 map00601 map00603 map01100
Pfam Domains
Protein Families
Gb3_synth Gly_transf_sug

Protein Analysis

309

Amino Acids

33.93

Weight (kDa)

5.14

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 93 - 285 1.1e-33 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61050 AT1G61050
fragaria_vesca FvH4_3g04760
malus_domestica MD05G1317900.v1.1
prunus_persica Prupe.4G042800_v2.0.a1
pyrus_communis pycom05g29440
rosa_chinensis RchiOBHm_Chr5g0007781
rosa_laevigata RLG00000031488
rosa_multiflora Rmu_sc0005098.1_g000017
rosa_roxburghii Rroxscaffold_1G00068630
rosa_rugosa Rorug04G0430400
rosa_samantha Rh5AG058800 Rh5BG055500 Rh5CG065300 Rh5DG054500
rosa_wichuraiana Rw5G006100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccB7I CCANNNNNTGG 1 cut(s) 588
AccII CGCG 4 cut(s) 287, 444, 638, 710
AclWI GGATC 3 cut(s) 271, 298, 342
AcoI YGGCCR 3 cut(s) 298, 308, 705
AcsI RAATTY 1 cut(s) 91
AcuI CTGAAG 2 cut(s) 123, 692
AcyI GRCGYC 2 cut(s) 180, 351
AfiI CCNNNNNNNGG 3 cut(s) 385, 588, 661
AflIII ACRYGT 2 cut(s) 285, 636
AgsI TTSAA 3 cut(s) 57, 328, 421
AjnI CCWGG 1 cut(s) 291
AleI CACNNNNGTG 1 cut(s) 893
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
Alw21I GWGCWC 2 cut(s) 483, 549
Alw26I GTCTC 4 cut(s) 33, 118, 408, 541
AlwI GGATC 3 cut(s) 271, 298, 342
AoxI GGCC 8 cut(s) 298, 308, 410, 462, 705, 714, 768, 860
ApeKI GCWGC 4 cut(s) 79, 185, 188, 686
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 516, 576
AsuC2I CCSGG 4 cut(s) 332, 494, 574, 864
AsuHPI GGTGA 4 cut(s) 88, 155, 258, 880
AsuII TTCGAA 2 cut(s) 69, 435
AvaII GGWCC 2 cut(s) 516, 576
BanII GRGCYC 2 cut(s) 483, 549
BauI CACGAG 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 2 cut(s) 483, 549
BbvI GCAGC 4 cut(s) 91, 172, 175, 698
BccI CCATC 1 cut(s) 460
BceAI ACGGC 4 cut(s) 313, 376, 473, 643
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 327
BcnI CCSGG 4 cut(s) 332, 494, 574, 864
BcoDI GTCTC 4 cut(s) 33, 118, 408, 541
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 192
BfuI GTATCC 1 cut(s) 327
BglI GCCNNNNNGGC 2 cut(s) 713, 859
Bme1390I CCNGG 5 cut(s) 293, 332, 494, 574, 864
Bme18I GGWCC 2 cut(s) 516, 576
BmgT120I GGNCC 2 cut(s) 516, 576
BmiI GGNNCC 3 cut(s) 18, 577, 609
BmrFI CCNGG 5 cut(s) 293, 332, 494, 574, 864
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 4 cut(s) 221, 253, 377, 409
BpmI CTGGAG 1 cut(s) 610
Bpu10I CCTNAGC 1 cut(s) 747
Bpu14I TTCGAA 2 cut(s) 69, 435
BpuMI CCSGG 4 cut(s) 332, 494, 574, 864
BsaAI YACGTR 1 cut(s) 805
BsaHI GRCGYC 2 cut(s) 180, 351
BsaJI CCNNGG 3 cut(s) 528, 611, 863
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 588, 661
Bse118I RCCGGY 2 cut(s) 310, 733
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 528, 611, 863
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 3 cut(s) 385, 588, 661
BseMII CTCAG 2 cut(s) 129, 761
BseRI GAGGAG 2 cut(s) 245, 329
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 4 cut(s) 91, 172, 175, 698
BsgI GTGCAG 1 cut(s) 232
Bsh1236I CGCG 4 cut(s) 287, 444, 638, 710
Bsh1285I CGRYCG 2 cut(s) 311, 845
BshFI GGCC 8 cut(s) 300, 310, 412, 464, 707, 716, 770, 862
BsiEI CGRYCG 2 cut(s) 311, 845
BsiHKAI GWGCWC 2 cut(s) 483, 549
BsiSI CCGG 9 cut(s) 20, 307, 311, 331, 494, 542, 573, 734, 863
BslFI GGGAC 2 cut(s) 476, 614
BslI CCNNNNNNNGG 3 cut(s) 385, 588, 661
BsmAI GTCTC 4 cut(s) 33, 118, 408, 541
BsmBI CGTCTC 2 cut(s) 33, 408
BsmFI GGGAC 2 cut(s) 476, 614
BsnI GGCC 8 cut(s) 300, 310, 412, 464, 707, 716, 770, 862
Bsp119I TTCGAA 2 cut(s) 69, 435
Bsp1286I GDGCHC 2 cut(s) 483, 549
Bsp143I GATC 3 cut(s) 263, 303, 334
BspANI GGCC 8 cut(s) 300, 310, 412, 464, 707, 716, 770, 862
BspCNI CTCAG 2 cut(s) 128, 760
BspFNI CGCG 4 cut(s) 287, 444, 638, 710
BspLI GGNNCC 3 cut(s) 18, 577, 609
BspPI GGATC 3 cut(s) 271, 298, 342
BspQI GCTCTTC 1 cut(s) 434
BspT104I TTCGAA 2 cut(s) 69, 435
BsrFI RCCGGY 2 cut(s) 310, 733
BssAI RCCGGY 2 cut(s) 310, 733
BssECI CCNNGG 3 cut(s) 528, 611, 863
BssMI GATC 3 cut(s) 263, 303, 334
BssNI GRCGYC 2 cut(s) 180, 351
BssSI CACGAG 1 cut(s) 791
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 778, 843
Bst6I CTCTTC 6 cut(s) 144, 216, 222, 347, 400, 434
BstACI GRCGYC 2 cut(s) 180, 351
BstBAI YACGTR 1 cut(s) 805
BstBI TTCGAA 2 cut(s) 69, 435
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 4 cut(s) 115, 407, 720, 747
BstF5I GGATG 1 cut(s) 919
BstFNI CGCG 4 cut(s) 287, 444, 638, 710
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 3 cut(s) 266, 306, 337
BstMAI GTCTC 4 cut(s) 33, 118, 408, 541
BstMBI GATC 3 cut(s) 263, 303, 334
BstMCI CGRYCG 2 cut(s) 311, 845
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 5 cut(s) 291, 330, 492, 572, 862
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 4 cut(s) 287, 444, 638, 710
BstV1I GCAGC 4 cut(s) 91, 172, 175, 698
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 303, 334
BstYI RGATCY 2 cut(s) 303, 334
BstZI CGGCCG 1 cut(s) 308
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 8 cut(s) 300, 310, 412, 464, 707, 716, 770, 862
BtsCI GGATG 1 cut(s) 919
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 790
Cfr10I RCCGGY 2 cut(s) 310, 733
Cfr13I GGNCC 2 cut(s) 516, 576
CseI GACGC 4 cut(s) 293, 359, 455, 644
DdeI CTNAG 4 cut(s) 115, 407, 720, 747
DpnI GATC 3 cut(s) 265, 305, 336
DpnII GATC 3 cut(s) 263, 303, 334
EaeI YGGCCR 3 cut(s) 298, 308, 705
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 6 cut(s) 144, 216, 222, 347, 400, 434
EarI CTCTTC 6 cut(s) 144, 216, 222, 347, 400, 434
EciI GGCGGA 1 cut(s) 265
Ecl136II GAGCTC 2 cut(s) 481, 547
EclXI CGGCCG 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 2 cut(s) 483, 549
Eco47I GGWCC 2 cut(s) 516, 576
Eco52I CGGCCG 1 cut(s) 308
Eco53kI GAGCTC 2 cut(s) 481, 547
Eco57I CTGAAG 2 cut(s) 123, 692
EcoICRI GAGCTC 2 cut(s) 481, 547
EcoO109I RGGNCCY 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 2 cut(s) 483, 549
ErhI CCWWGG 1 cut(s) 528
Esp3I CGTCTC 2 cut(s) 33, 408
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FaqI GGGAC 2 cut(s) 476, 614
FauI CCCGC 1 cut(s) 383
FokI GGATG 1 cut(s) 906
FriOI GRGCYC 2 cut(s) 483, 549
FspBI CTAG 1 cut(s) 102
GlaI GCGC 1 cut(s) 789
GsuI CTGGAG 1 cut(s) 610
HaeIII GGCC 8 cut(s) 300, 310, 412, 464, 707, 716, 770, 862
HapII CCGG 9 cut(s) 20, 307, 311, 331, 494, 542, 573, 734, 863
HgaI GACGC 4 cut(s) 293, 359, 455, 644
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 2 cut(s) 180, 351
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HinfI GANTC 5 cut(s) 41, 253, 365, 470, 594
HpaII CCGG 9 cut(s) 20, 307, 311, 331, 494, 542, 573, 734, 863
HphI GGTGA 4 cut(s) 88, 155, 258, 880
Hpy166II GTNNAC 1 cut(s) 898
Hpy188I TCNGA 8 cut(s) 33, 118, 321, 469, 475, 551, 615, 929
Hpy188III TCNNGA 3 cut(s) 257, 589, 649
Hpy8I GTNNAC 1 cut(s) 898
HpyAV CCTTC 4 cut(s) 157, 706, 817, 821
HpyCH4III ACNGT 2 cut(s) 778, 843
HpyCH4IV ACGT 4 cut(s) 48, 123, 180, 804
HpyCH4V TGCA 2 cut(s) 4, 249
HpyF3I CTNAG 4 cut(s) 115, 407, 720, 747
HpySE526I ACGT 4 cut(s) 48, 123, 180, 804
Hsp92I GRCGYC 2 cut(s) 180, 351
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 3 cut(s) 263, 303, 334
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 4 cut(s) 454, 544, 552, 615
Lsp1109I GCAGC 4 cut(s) 91, 172, 175, 698
MaeI CTAG 1 cut(s) 102
MaeII ACGT 4 cut(s) 48, 123, 180, 804
MalI GATC 3 cut(s) 265, 305, 336
MboI GATC 3 cut(s) 263, 303, 334
MflI RGATCY 2 cut(s) 303, 334
MhlI GDGCHC 2 cut(s) 483, 549
MluCI AATT 5 cut(s) 52, 64, 91, 565, 658
MluI ACGCGT 2 cut(s) 285, 636
MmeI TCCRAC 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 1 cut(s) 762
MslI CAYNNNNRTG 1 cut(s) 893
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 9 cut(s) 20, 307, 311, 331, 494, 542, 573, 734, 863
MspR9I CCNGG 5 cut(s) 293, 332, 494, 574, 864
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 4 cut(s) 287, 444, 638, 710
NciI CCSGG 4 cut(s) 332, 494, 574, 864
NdeII GATC 3 cut(s) 263, 303, 334
NlaIV GGNNCC 3 cut(s) 18, 577, 609
NspV TTCGAA 2 cut(s) 69, 435
OliI CACNNNNGTG 1 cut(s) 893
PciSI GCTCTTC 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 5 cut(s) 41, 253, 365, 470, 594
PflMI CCANNNNNTGG 1 cut(s) 588
PfoI TCCNGGA 2 cut(s) 291, 492
Ppu21I YACGTR 1 cut(s) 805
PpuMI RGGWCCY 1 cut(s) 576
Psp124BI GAGCTC 2 cut(s) 483, 549
Psp5II RGGWCCY 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 18, 577, 609
PspPI GGNCC 2 cut(s) 516, 576
PspPPI RGGWCCY 1 cut(s) 576
PsuI RGATCY 2 cut(s) 303, 334
RseI CAYNNNNRTG 1 cut(s) 893
SacI GAGCTC 2 cut(s) 483, 549
SapI GCTCTTC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 762
Sau3AI GATC 3 cut(s) 263, 303, 334
Sau96I GGNCC 2 cut(s) 516, 576
ScrFI CCNGG 5 cut(s) 293, 332, 494, 574, 864
SduI GDGCHC 2 cut(s) 483, 549
SfcI CTRYAG 1 cut(s) 192
SfiI GGCCNNNNNGGCC 1 cut(s) 713
SfuI TTCGAA 2 cut(s) 69, 435
SinI GGWCC 2 cut(s) 516, 576
SmiMI CAYNNNNRTG 1 cut(s) 893
Sse9I AATT 5 cut(s) 52, 64, 91, 565, 658
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 2 cut(s) 483, 549
StyD4I CCNGG 5 cut(s) 291, 330, 492, 572, 862
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 778, 843
TaiI ACGT 4 cut(s) 51, 126, 183, 807
TaqI TCGA 3 cut(s) 69, 435, 483
TasI AATT 5 cut(s) 52, 64, 91, 565, 658
TauI GCSGC 7 cut(s) 415, 692, 695, 698, 701, 710, 719
TfiI GAWTC 5 cut(s) 41, 253, 365, 470, 594
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TseI GCWGC 4 cut(s) 79, 185, 188, 686
TspDTI ATGAA 2 cut(s) 824, 908
TspGWI ACGGA 1 cut(s) 276
Van91I CCANNNNNTGG 1 cut(s) 588
VpaK11BI GGWCC 2 cut(s) 516, 576
XapI RAATTY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.