mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G04920 AT4G04920 AT4G04920 |
| fragaria_vesca | FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 |
| malus_domestica | MD01G1005800.v1.1 MD05G1316200.v1.1 MD10G1296700.v1.1 |
| prunus_persica | Prupe.4G043900_v2.0.a1 Prupe.4G043900_v2.0.a1 |
| pyrus_communis | pycom05g29330 pycom10g24950 |
| rosa_chinensis | RchiOBHm_Chr5g0008021 |
| rosa_laevigata | RLG00000031528 |
| rosa_multiflora | Rmu_sc0007348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068450 |
| rosa_rugosa | Rorug04G0432600 |
| rosa_samantha | Rh5AG060700 Rh5BG057500 Rh5CG067600 Rh5DG056700 |
| rosa_wichuraiana | Rw5G005990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 929, 2701 |
| Acc36I | ACCTGC | 4 cut(s) | 929, 1064, 1632, 2701 |
| AccB1I | GGYRCC | 2 cut(s) | 1474, 2573 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1260 |
| AccBSI | CCGCTC | 1 cut(s) | 3661 |
| AccII | CGCG | 1 cut(s) | 2321 |
| AccIII | TCCGGA | 1 cut(s) | 3328 |
| AclI | AACGTT | 2 cut(s) | 423, 1761 |
| AcoI | YGGCCR | 3 cut(s) | 746, 2421, 3440 |
| AcsI | RAATTY | 4 cut(s) | 336, 710, 733, 751 |
| AcuI | CTGAAG | 3 cut(s) | 1400, 2319, 3597 |
| AcvI | CACGTG | 1 cut(s) | 1260 |
| AdeI | CACNNNGTG | 2 cut(s) | 1260, 2000 |
| AfaI | GTAC | 9 cut(s) | 564, 829, 1179, 1846, 1993, 2046, 2250, 2596, 3168 |
| AfeI | AGCGCT | 1 cut(s) | 277 |
| AflIII | ACRYGT | 2 cut(s) | 1344, 1864 |
| AjiI | CACGTC | 1 cut(s) | 189 |
| AjnI | CCWGG | 7 cut(s) | 221, 988, 1138, 2683, 2839, 2848, 2947 |
| AleI | CACNNNNGTG | 3 cut(s) | 113, 841, 3494 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 3705 |
| Alw21I | GWGCWC | 1 cut(s) | 2803 |
| Alw26I | GTCTC | 4 cut(s) | 195, 810, 1353, 2899 |
| Alw44I | GTGCAC | 1 cut(s) | 2799 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1817, 3239, 3684 |
| Ama87I | CYCGRG | 2 cut(s) | 1299, 2928 |
| Aor13HI | TCCGGA | 1 cut(s) | 3328 |
| Aor51HI | AGCGCT | 1 cut(s) | 277 |
| ApaLI | GTGCAC | 1 cut(s) | 2799 |
| ApoI | RAATTY | 4 cut(s) | 336, 710, 733, 751 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 677, 709 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 711 |
| AspLEI | GCGC | 3 cut(s) | 278, 2323, 2397 |
| AsuC2I | CCSGG | 1 cut(s) | 3220 |
| AsuHPI | GGTGA | 6 cut(s) | 462, 636, 1535, 1688, 2285, 3046 |
| AsuNHI | GCTAGC | 1 cut(s) | 572 |
| AvaI | CYCGRG | 2 cut(s) | 1299, 2928 |
| AvaII | GGWCC | 9 cut(s) | 225, 1370, 1724, 1840, 2099, 2525, 2639, 3321, 3641 |
| AxyI | CCTNAGG | 2 cut(s) | 781, 1227 |
| BaeGI | GKGCMC | 1 cut(s) | 2803 |
| BalI | TGGCCA | 3 cut(s) | 748, 2423, 3442 |
| BanI | GGYRCC | 2 cut(s) | 1474, 2573 |
| BanII | GRGCYC | 5 cut(s) | 213, 1226, 2518, 2848, 3430 |
| BauI | CACGAG | 2 cut(s) | 441, 486 |
| BbrPI | CACGTG | 1 cut(s) | 1260 |
| BbsI | GAAGAC | 3 cut(s) | 171, 1574, 3566 |
| Bbv12I | GWGCWC | 1 cut(s) | 2803 |
| BbvCI | CCTCAGC | 1 cut(s) | 2835 |
| BciT130I | CCWGG | 7 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949 |
| BciVI | GTATCC | 1 cut(s) | 3011 |
| BcnI | CCSGG | 1 cut(s) | 3220 |
| BcoDI | GTCTC | 4 cut(s) | 195, 810, 1353, 2899 |
| BfmI | CTRYAG | 3 cut(s) | 1233, 1278, 3636 |
| BfoI | RGCGCY | 2 cut(s) | 279, 2398 |
| BfuAI | ACCTGC | 4 cut(s) | 929, 1064, 1632, 2701 |
| BfuI | GTATCC | 1 cut(s) | 3011 |
| BmcAI | AGTACT | 1 cut(s) | 2046 |
| Bme1390I | CCNGG | 8 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949, 3220 |
| Bme18I | GGWCC | 9 cut(s) | 225, 1370, 1724, 1840, 2099, 2525, 2639, 3321, 3641 |
| BmeT110I | CYCGRG | 2 cut(s) | 1299, 2928 |
| BmgBI | CACGTC | 1 cut(s) | 189 |
| BmiI | GGNNCC | 6 cut(s) | 1371, 1476, 2515, 2575, 2847, 3427 |
| BmrFI | CCNGG | 8 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949, 3220 |
| BmtI | GCTAGC | 1 cut(s) | 576 |
| BpiI | GAAGAC | 3 cut(s) | 171, 1574, 3566 |
| BpmI | CTGGAG | 4 cut(s) | 1179, 1290, 2970, 3261 |
| Bpu10I | CCTNAGC | 2 cut(s) | 255, 2835 |
| BpuEI | CTTGAG | 2 cut(s) | 197, 528 |
| BpuMI | CCSGG | 1 cut(s) | 3220 |
| BsaAI | YACGTR | 5 cut(s) | 566, 1260, 1865, 2347, 3533 |
| BsaI | GGTCTC | 2 cut(s) | 810, 2899 |
| BsaWI | WCCGGW | 2 cut(s) | 2908, 3328 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 158, 188, 3656, 3686 |
| Bse118I | RCCGGY | 3 cut(s) | 550, 2441, 2933 |
| Bse1I | ACTGG | 7 cut(s) | 584, 1196, 1421, 1976, 2052, 3101, 3568 |
| Bse21I | CCTNAGG | 2 cut(s) | 781, 1227 |
| Bse3DI | GCAATG | 8 cut(s) | 933, 1006, 1042, 1314, 2037, 2169, 2310, 2577 |
| BseAI | TCCGGA | 1 cut(s) | 3328 |
| BseBI | CCWGG | 7 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949 |
| BseGI | GGATG | 9 cut(s) | 1391, 1409, 1984, 2017, 2056, 2888, 3051, 3091, 3337 |
| BseMI | GCAATG | 8 cut(s) | 933, 1006, 1042, 1314, 2037, 2169, 2310, 2577 |
| BseNI | ACTGG | 7 cut(s) | 584, 1196, 1421, 1976, 2052, 3101, 3568 |
| BseRI | GAGGAG | 5 cut(s) | 166, 429, 769, 2927, 3044 |
| BseSI | GKGCMC | 1 cut(s) | 2803 |
| BseYI | CCCAGC | 4 cut(s) | 875, 1401, 2792, 3684 |
| BsgI | GTGCAG | 2 cut(s) | 432, 3252 |
| Bsh1236I | CGCG | 1 cut(s) | 2321 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3387 |
| BshNI | GGYRCC | 2 cut(s) | 1474, 2573 |
| BsiEI | CGRYCG | 1 cut(s) | 3387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2803 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1299, 2928 |
| BsiSI | CCGG | 6 cut(s) | 551, 2442, 2909, 2934, 3220, 3329 |
| BslFI | GGGAC | 3 cut(s) | 663, 1028, 1350 |
| BsmAI | GTCTC | 4 cut(s) | 195, 810, 1353, 2899 |
| BsmBI | CGTCTC | 1 cut(s) | 195 |
| BsmFI | GGGAC | 3 cut(s) | 663, 1028, 1350 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| Bso31I | GGTCTC | 2 cut(s) | 810, 2899 |
| BsoBI | CYCGRG | 2 cut(s) | 1299, 2928 |
| Bsp1286I | GDGCHC | 6 cut(s) | 213, 1226, 2518, 2803, 2848, 3430 |
| Bsp13I | TCCGGA | 1 cut(s) | 3328 |
| Bsp1407I | TGTACA | 1 cut(s) | 1991 |
| Bsp19I | CCATGG | 4 cut(s) | 156, 511, 2258, 3430 |
| BspEI | TCCGGA | 1 cut(s) | 3328 |
| BspFNI | CGCG | 1 cut(s) | 2321 |
| BspHI | TCATGA | 1 cut(s) | 3376 |
| BspLI | GGNNCC | 6 cut(s) | 1371, 1476, 2515, 2575, 2847, 3427 |
| BspMAI | CTGCAG | 2 cut(s) | 1237, 1282 |
| BspMI | ACCTGC | 4 cut(s) | 929, 1064, 1632, 2701 |
| BspOI | GCTAGC | 1 cut(s) | 576 |
| BspQI | GCTCTTC | 1 cut(s) | 2756 |
| BspT107I | GGYRCC | 2 cut(s) | 1474, 2573 |
| BspTNI | GGTCTC | 2 cut(s) | 810, 2899 |
| BsrBI | CCGCTC | 1 cut(s) | 3661 |
| BsrDI | GCAATG | 8 cut(s) | 933, 1006, 1042, 1314, 2037, 2169, 2310, 2577 |
| BsrFI | RCCGGY | 3 cut(s) | 550, 2441, 2933 |
| BsrGI | TGTACA | 1 cut(s) | 1991 |
| BsrI | ACTGG | 7 cut(s) | 584, 1196, 1421, 1976, 2052, 3101, 3568 |
| BssAI | RCCGGY | 3 cut(s) | 550, 2441, 2933 |
| BssSI | CACGAG | 2 cut(s) | 441, 486 |
| BssT1I | CCWWGG | 8 cut(s) | 156, 511, 994, 2258, 3317, 3430, 3443, 3628 |
| Bst2BI | CACGAG | 2 cut(s) | 441, 486 |
| Bst2UI | CCWGG | 7 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949 |
| Bst6I | CTCTTC | 3 cut(s) | 2073, 2756, 3279 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1778, 3214, 3239 |
| BstAUI | TGTACA | 1 cut(s) | 1991 |
| BstBAI | YACGTR | 5 cut(s) | 566, 1260, 1865, 2347, 3533 |
| BstDSI | CCRYGG | 4 cut(s) | 156, 511, 2258, 3430 |
| BstEII | GGTNACC | 1 cut(s) | 468 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 543 |
| BstF5I | GGATG | 9 cut(s) | 1391, 1409, 1984, 2017, 2056, 2888, 3051, 3091, 3337 |
| BstFNI | CGCG | 1 cut(s) | 2321 |
| BstH2I | RGCGCY | 2 cut(s) | 279, 2398 |
| BstHHI | GCGC | 3 cut(s) | 278, 2323, 2397 |
| BstMAI | GTCTC | 4 cut(s) | 195, 810, 1353, 2899 |
| BstMCI | CGRYCG | 1 cut(s) | 3387 |
| BstNI | CCWGG | 7 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949 |
| BstNSI | RCATGY | 5 cut(s) | 1348, 2179, 2203, 2827, 3208 |
| BstPI | GGTNACC | 1 cut(s) | 468 |
| BstSCI | CCNGG | 8 cut(s) | 221, 988, 1138, 2683, 2839, 2848, 2947, 3218 |
| BstSFI | CTRYAG | 3 cut(s) | 1233, 1278, 3636 |
| BstSLI | GKGCMC | 1 cut(s) | 2803 |
| BstSNI | TACGTA | 1 cut(s) | 2347 |
| BstUI | CGCG | 1 cut(s) | 2321 |
| BstV2I | GAAGAC | 3 cut(s) | 171, 1574, 3566 |
| BstX2I | RGATCY | 3 cut(s) | 1265, 1766, 3061 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 366, 654, 1068 |
| BstYI | RGATCY | 3 cut(s) | 1265, 1766, 3061 |
| Bsu36I | CCTNAGG | 2 cut(s) | 781, 1227 |
| BsuI | GTATCC | 1 cut(s) | 3011 |
| BtgI | CCRYGG | 4 cut(s) | 156, 511, 2258, 3430 |
| BtrI | CACGTC | 1 cut(s) | 189 |
| BtsCI | GGATG | 9 cut(s) | 1391, 1409, 1984, 2017, 2056, 2888, 3051, 3091, 3337 |
| BtsI | GCAGTG | 1 cut(s) | 2452 |
| BtsIMutI | CAGTG | 5 cut(s) | 108, 1174, 2038, 2452, 2641 |
| BveI | ACCTGC | 4 cut(s) | 929, 1064, 1632, 2701 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1817, 3239, 3684 |
| CciI | TCATGA | 1 cut(s) | 3376 |
| CfoI | GCGC | 3 cut(s) | 278, 2323, 2397 |
| Cfr10I | RCCGGY | 3 cut(s) | 550, 2441, 2933 |
| Csp6I | GTAC | 9 cut(s) | 563, 828, 1178, 1845, 1992, 2045, 2249, 2595, 3167 |
| CviQI | GTAC | 9 cut(s) | 563, 828, 1178, 1845, 1992, 2045, 2249, 2595, 3167 |
| DraI | TTTAAA | 2 cut(s) | 1537, 1854 |
| DraIII | CACNNNGTG | 2 cut(s) | 1260, 2000 |
| EaeI | YGGCCR | 3 cut(s) | 746, 2421, 3440 |
| Eam1104I | CTCTTC | 3 cut(s) | 2073, 2756, 3279 |
| EarI | CTCTTC | 3 cut(s) | 2073, 2756, 3279 |
| EciI | GGCGGA | 1 cut(s) | 1863 |
| Eco105I | TACGTA | 1 cut(s) | 2347 |
| Eco130I | CCWWGG | 8 cut(s) | 156, 511, 994, 2258, 3317, 3430, 3443, 3628 |
| Eco24I | GRGCYC | 5 cut(s) | 213, 1226, 2518, 2848, 3430 |
| Eco31I | GGTCTC | 2 cut(s) | 810, 2899 |
| Eco47I | GGWCC | 9 cut(s) | 225, 1370, 1724, 1840, 2099, 2525, 2639, 3321, 3641 |
| Eco47III | AGCGCT | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 3 cut(s) | 1400, 2319, 3597 |
| Eco72I | CACGTG | 1 cut(s) | 1260 |
| Eco81I | CCTNAGG | 2 cut(s) | 781, 1227 |
| Eco88I | CYCGRG | 2 cut(s) | 1299, 2928 |
| Eco91I | GGTNACC | 1 cut(s) | 468 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 543 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1370, 2972 |
| EcoO65I | GGTNACC | 1 cut(s) | 468 |
| EcoRI | GAATTC | 1 cut(s) | 336 |
| EcoRII | CCWGG | 7 cut(s) | 221, 988, 1138, 2683, 2839, 2848, 2947 |
| EcoT14I | CCWWGG | 8 cut(s) | 156, 511, 994, 2258, 3317, 3430, 3443, 3628 |
| EcoT38I | GRGCYC | 5 cut(s) | 213, 1226, 2518, 2848, 3430 |
| ErhI | CCWWGG | 8 cut(s) | 156, 511, 994, 2258, 3317, 3430, 3443, 3628 |
| Esp3I | CGTCTC | 1 cut(s) | 195 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3595, 3627 |
| FaqI | GGGAC | 3 cut(s) | 663, 1028, 1350 |
| FauI | CCCGC | 4 cut(s) | 284, 1697, 2326, 3654 |
| FauNDI | CATATG | 2 cut(s) | 1216, 1354 |
| FokI | GGATG | 9 cut(s) | 1396, 1398, 1991, 2024, 2063, 2875, 3038, 3078, 3344 |
| FriOI | GRGCYC | 5 cut(s) | 213, 1226, 2518, 2848, 3430 |
| GlaI | GCGC | 3 cut(s) | 277, 2322, 2396 |
| GsaI | CCCAGC | 4 cut(s) | 879, 1405, 2796, 3688 |
| GsuI | CTGGAG | 4 cut(s) | 1179, 1290, 2970, 3261 |
| HaeII | RGCGCY | 2 cut(s) | 279, 2398 |
| HapII | CCGG | 6 cut(s) | 551, 2442, 2909, 2934, 3220, 3329 |
| HhaI | GCGC | 3 cut(s) | 278, 2323, 2397 |
| Hin6I | GCGC | 3 cut(s) | 276, 2321, 2395 |
| HinP1I | GCGC | 3 cut(s) | 276, 2321, 2395 |
| HincII | GTYRAC | 2 cut(s) | 696, 1969 |
| HindII | GTYRAC | 2 cut(s) | 696, 1969 |
| HindIII | AAGCTT | 1 cut(s) | 2559 |
| HpaII | CCGG | 6 cut(s) | 551, 2442, 2909, 2934, 3220, 3329 |
| HphI | GGTGA | 6 cut(s) | 462, 636, 1535, 1688, 2285, 3046 |
| Hpy99I | CGWCG | 7 cut(s) | 20, 32, 125, 143, 146, 149, 152 |
| HpyAV | CCTTC | 9 cut(s) | 549, 1383, 1424, 1585, 1798, 1894, 2129, 2963, 2976 |
| HspAI | GCGC | 3 cut(s) | 276, 2321, 2395 |
| Kpn2I | TCCGGA | 1 cut(s) | 3328 |
| KroI | GCCGGC | 2 cut(s) | 550, 2441 |
| KroNI | GCCGGC | 2 cut(s) | 552, 2443 |
| LguI | GCTCTTC | 1 cut(s) | 2756 |
| LmnI | GCTCC | 6 cut(s) | 1562, 1786, 2513, 2851, 2951, 3425 |
| MbiI | CCGCTC | 1 cut(s) | 3661 |
| MfeI | CAATTG | 3 cut(s) | 948, 1773, 1929 |
| MflI | RGATCY | 3 cut(s) | 1265, 1766, 3061 |
| MhlI | GDGCHC | 6 cut(s) | 213, 1226, 2518, 2803, 2848, 3430 |
| MlsI | TGGCCA | 3 cut(s) | 748, 2423, 3442 |
| MluNI | TGGCCA | 3 cut(s) | 748, 2423, 3442 |
| MlyI | GAGTC | 6 cut(s) | 13, 526, 858, 1050, 1960, 3374 |
| MmeI | TCCRAC | 4 cut(s) | 252, 1319, 1744, 1942 |
| Mox20I | TGGCCA | 3 cut(s) | 748, 2423, 3442 |
| MroI | TCCGGA | 1 cut(s) | 3328 |
| MroNI | GCCGGC | 2 cut(s) | 550, 2441 |
| MroXI | GAANNNNTTC | 1 cut(s) | 711 |
| MscI | TGGCCA | 3 cut(s) | 748, 2423, 3442 |
| MseI | TTAA | 6 cut(s) | 426, 1536, 1758, 1853, 3485, 3602 |
| Msp20I | TGGCCA | 3 cut(s) | 748, 2423, 3442 |
| MspA1I | CMGCKG | 2 cut(s) | 1553, 3684 |
| MspI | CCGG | 6 cut(s) | 551, 2442, 2909, 2934, 3220, 3329 |
| MspR9I | CCNGG | 8 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949, 3220 |
| MunI | CAATTG | 3 cut(s) | 948, 1773, 1929 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 7 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949 |
| MvnI | CGCG | 1 cut(s) | 2321 |
| NaeI | GCCGGC | 2 cut(s) | 552, 2443 |
| NciI | CCSGG | 1 cut(s) | 3220 |
| NcoI | CCATGG | 4 cut(s) | 156, 511, 2258, 3430 |
| NdeI | CATATG | 2 cut(s) | 1216, 1354 |
| NgoMIV | GCCGGC | 2 cut(s) | 550, 2441 |
| NheI | GCTAGC | 1 cut(s) | 572 |
| NlaIV | GGNNCC | 6 cut(s) | 1371, 1476, 2515, 2575, 2847, 3427 |
| NmeAIII | GCCGAG | 2 cut(s) | 2032, 3174 |
| NmuCI | GTSAC | 3 cut(s) | 468, 642, 982 |
| NspI | RCATGY | 5 cut(s) | 1348, 2179, 2203, 2827, 3208 |
| OliI | CACNNNNGTG | 3 cut(s) | 113, 841, 3494 |
| PagI | TCATGA | 1 cut(s) | 3376 |
| PaqCI | CACCTGC | 2 cut(s) | 929, 2701 |
| PciI | ACATGT | 1 cut(s) | 1344 |
| PciSI | GCTCTTC | 1 cut(s) | 2756 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 24, 144, 147 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PdiI | GCCGGC | 2 cut(s) | 552, 2443 |
| PdmI | GAANNNNTTC | 1 cut(s) | 711 |
| PflFI | GACNNNGTC | 1 cut(s) | 3383 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1260 |
| PfoI | TCCNGGA | 1 cut(s) | 2683 |
| PleI | GAGTC | 6 cut(s) | 12, 526, 858, 1049, 1959, 3374 |
| PmaCI | CACGTG | 1 cut(s) | 1260 |
| PmlI | CACGTG | 1 cut(s) | 1260 |
| PpsI | GAGTC | 6 cut(s) | 12, 526, 858, 1049, 1959, 3374 |
| Ppu21I | YACGTR | 5 cut(s) | 566, 1260, 1865, 2347, 3533 |
| PpuMI | RGGWCCY | 1 cut(s) | 1370 |
| PscI | ACATGT | 1 cut(s) | 1344 |
| Psp1406I | AACGTT | 2 cut(s) | 423, 1761 |
| Psp5II | RGGWCCY | 1 cut(s) | 1370 |
| Psp6I | CCWGG | 7 cut(s) | 221, 988, 1138, 2683, 2839, 2848, 2947 |
| PspCI | CACGTG | 1 cut(s) | 1260 |
| PspEI | GGTNACC | 1 cut(s) | 468 |
| PspFI | CCCAGC | 4 cut(s) | 875, 1401, 2792, 3684 |
| PspGI | CCWGG | 7 cut(s) | 221, 988, 1138, 2683, 2839, 2848, 2947 |
| PspN4I | GGNNCC | 6 cut(s) | 1371, 1476, 2515, 2575, 2847, 3427 |
| PspPPI | RGGWCCY | 1 cut(s) | 1370 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2340, 2372 |
| PstI | CTGCAG | 2 cut(s) | 1237, 1282 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1817, 3239, 3684 |
| PsuI | RGATCY | 3 cut(s) | 1265, 1766, 3061 |
| PsyI | GACNNNGTC | 1 cut(s) | 3383 |
| PvuII | CAGCTG | 1 cut(s) | 1553 |
| RsaI | GTAC | 9 cut(s) | 564, 829, 1179, 1846, 1993, 2046, 2250, 2596, 3168 |
| RsaNI | GTAC | 9 cut(s) | 563, 828, 1178, 1845, 1992, 2045, 2249, 2595, 3167 |
| SapI | GCTCTTC | 1 cut(s) | 2756 |
| SaqAI | TTAA | 6 cut(s) | 426, 1536, 1758, 1853, 3485, 3602 |
| ScaI | AGTACT | 1 cut(s) | 2046 |
| SchI | GAGTC | 6 cut(s) | 13, 526, 858, 1050, 1960, 3374 |
| ScrFI | CCNGG | 8 cut(s) | 223, 990, 1140, 2685, 2841, 2850, 2949, 3220 |
| SduI | GDGCHC | 6 cut(s) | 213, 1226, 2518, 2803, 2848, 3430 |
| SfcI | CTRYAG | 3 cut(s) | 1233, 1278, 3636 |
| SinI | GGWCC | 9 cut(s) | 225, 1370, 1724, 1840, 2099, 2525, 2639, 3321, 3641 |
| SmlI | CTYRAG | 2 cut(s) | 212, 543 |
| SmoI | CTYRAG | 2 cut(s) | 212, 543 |
| SnaBI | TACGTA | 1 cut(s) | 2347 |
| SspI | AATATT | 2 cut(s) | 1440, 2335 |
| StyD4I | CCNGG | 8 cut(s) | 221, 988, 1138, 2683, 2839, 2848, 2947, 3218 |
| StyI | CCWWGG | 8 cut(s) | 156, 511, 994, 2258, 3317, 3430, 3443, 3628 |
| TaqI | TCGA | 7 cut(s) | 15, 57, 138, 1651, 1796, 3387, 3724 |
| TaqII | GACCGA | 2 cut(s) | 1169, 3373 |
| TatI | WGTACW | 4 cut(s) | 827, 1991, 2044, 3166 |
| TauI | GCSGC | 4 cut(s) | 2395, 2415, 3139, 3684 |
| Tru1I | TTAA | 6 cut(s) | 426, 1536, 1758, 1853, 3485, 3602 |
| Tru9I | TTAA | 6 cut(s) | 426, 1536, 1758, 1853, 3485, 3602 |
| TscAI | CASTG | 5 cut(s) | 115, 1174, 2038, 2452, 2641 |
| TseFI | GTSAC | 3 cut(s) | 468, 642, 982 |
| Tsp45I | GTSAC | 3 cut(s) | 468, 642, 982 |
| TspDTI | ATGAA | 7 cut(s) | 368, 609, 788, 1421, 2051, 2368, 2641 |
| TspGWI | ACGGA | 2 cut(s) | 169, 3313 |
| TspRI | CASTG | 5 cut(s) | 115, 1174, 2038, 2452, 2641 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3383 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1260 |
| VneI | GTGCAC | 1 cut(s) | 2799 |
| VpaK11BI | GGWCC | 9 cut(s) | 225, 1370, 1724, 1840, 2099, 2525, 2639, 3321, 3641 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 543 |
| XapI | RAATTY | 4 cut(s) | 336, 710, 733, 751 |
| XbaI | TCTAGA | 2 cut(s) | 2170, 3346 |
| XceI | RCATGY | 5 cut(s) | 1348, 2179, 2203, 2827, 3208 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1760, 3285 |
| XmnI | GAANNNNTTC | 1 cut(s) | 711 |
| ZrmI | AGTACT | 1 cut(s) | 2046 |