mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G04920 AT4G04920 AT4G04920 |
| fragaria_vesca | FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 |
| malus_domestica | MD01G1005800.v1.1 MD05G1316200.v1.1 MD10G1296700.v1.1 |
| prunus_persica | Prupe.4G043900_v2.0.a1 Prupe.4G043900_v2.0.a1 |
| pyrus_communis | pycom05g29330 pycom10g24950 |
| rosa_chinensis | RchiOBHm_Chr5g0008021 |
| rosa_laevigata | RLG00000031528 |
| rosa_multiflora | Rmu_sc0007348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068450 |
| rosa_rugosa | Rorug04G0432600 |
| rosa_samantha | Rh5AG060700 Rh5BG057500 Rh5CG067600 Rh5DG056700 |
| rosa_wichuraiana | Rw5G005990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2683 |
| Acc36I | ACCTGC | 3 cut(s) | 1623, 2683, 2962 |
| Acc65I | GGTACC | 1 cut(s) | 2239 |
| AccB1I | GGYRCC | 3 cut(s) | 899, 1450, 2239 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 555, 1236, 1277, 2822 |
| AccI | GTMKAC | 2 cut(s) | 1787, 2340 |
| AccII | CGCG | 1 cut(s) | 543 |
| AccIII | TCCGGA | 2 cut(s) | 3151, 3371 |
| AciI | CCGC | 8 cut(s) | 168, 1256, 2383, 2840, 3583, 3640, 3661, 3690 |
| AclI | AACGTT | 1 cut(s) | 2270 |
| AcoI | YGGCCR | 2 cut(s) | 1046, 3419 |
| AcsI | RAATTY | 2 cut(s) | 686, 709 |
| AcuI | CTGAAG | 7 cut(s) | 741, 1125, 1376, 2310, 3339, 3456, 3576 |
| AcyI | GRCGYC | 1 cut(s) | 2258 |
| AflIII | ACRYGT | 2 cut(s) | 1320, 1855 |
| AgsI | TTSAA | 9 cut(s) | 397, 440, 680, 827, 1029, 2306, 2552, 2945, 3164 |
| AhlI | ACTAGT | 1 cut(s) | 2314 |
| AjnI | CCWGG | 8 cut(s) | 197, 964, 1048, 1907, 2665, 2821, 2926, 3063 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3156, 3188 |
| AleI | CACNNNNGTG | 2 cut(s) | 817, 3473 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 3684 |
| Alw21I | GWGCWC | 2 cut(s) | 2758, 2785 |
| Alw26I | GTCTC | 4 cut(s) | 450, 708, 1329, 3638 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1808, 3218, 3663 |
| Ama87I | CYCGRG | 2 cut(s) | 230, 1202 |
| Aor13HI | TCCGGA | 2 cut(s) | 3151, 3371 |
| ApoI | RAATTY | 2 cut(s) | 686, 709 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 593, 625 |
| AseI | ATTAAT | 1 cut(s) | 1749 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 687 |
| Asp718I | GGTACC | 1 cut(s) | 2239 |
| AspA2I | CCTAGG | 1 cut(s) | 970 |
| AspLEI | GCGC | 3 cut(s) | 2388, 3279, 3432 |
| AsuC2I | CCSGG | 4 cut(s) | 1691, 2176, 2916, 3199 |
| AsuHPI | GGTGA | 4 cut(s) | 1400, 1511, 1679, 3025 |
| AvaI | CYCGRG | 2 cut(s) | 230, 1202 |
| AvaII | GGWCC | 9 cut(s) | 201, 780, 1018, 1346, 1715, 1831, 2090, 2621, 2951 |
| AvrII | CCTAGG | 1 cut(s) | 970 |
| AxyI | CCTNAGG | 1 cut(s) | 3607 |
| BalI | TGGCCA | 2 cut(s) | 1048, 3421 |
| BamHI | GGATCC | 1 cut(s) | 3319 |
| BanI | GGYRCC | 3 cut(s) | 899, 1450, 2239 |
| BanII | GRGCYC | 3 cut(s) | 132, 2758, 3409 |
| BauI | CACGAG | 2 cut(s) | 417, 462 |
| BbsI | GAAGAC | 5 cut(s) | 108, 156, 166, 1565, 3545 |
| Bbv12I | GWGCWC | 2 cut(s) | 2758, 2785 |
| BccI | CCATC | 8 cut(s) | 290, 943, 1007, 1356, 1357, 2236, 2579, 3125 |
| BceAI | ACGGC | 4 cut(s) | 155, 537, 2020, 3515 |
| BciT130I | CCWGG | 8 cut(s) | 199, 966, 1050, 1909, 2667, 2823, 2928, 3065 |
| BciVI | GTATCC | 1 cut(s) | 798 |
| BcnI | CCSGG | 4 cut(s) | 1691, 2176, 2916, 3199 |
| BcoDI | GTCTC | 4 cut(s) | 450, 708, 1329, 3638 |
| BcuI | ACTAGT | 1 cut(s) | 2314 |
| BfaI | CTAG | 8 cut(s) | 717, 858, 971, 2162, 2315, 2454, 3204, 3548 |
| BfoI | RGCGCY | 1 cut(s) | 2389 |
| BfuAI | ACCTGC | 3 cut(s) | 1623, 2683, 2962 |
| BfuI | GTATCC | 1 cut(s) | 798 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 465 |
| BlnI | CCTAGG | 1 cut(s) | 970 |
| BlpI | GCTNAGC | 2 cut(s) | 1801, 2757 |
| BmcAI | AGTACT | 1 cut(s) | 2037 |
| Bme18I | GGWCC | 9 cut(s) | 201, 780, 1018, 1346, 1715, 1831, 2090, 2621, 2951 |
| BmeT110I | CYCGRG | 2 cut(s) | 230, 1202 |
| BmiI | GGNNCC | 9 cut(s) | 782, 901, 1019, 1020, 1347, 1452, 2241, 3321, 3406 |
| BmrI | ACTGGG | 3 cut(s) | 720, 778, 3645 |
| BmuI | ACTGGG | 3 cut(s) | 720, 778, 3645 |
| BpiI | GAAGAC | 5 cut(s) | 108, 156, 166, 1565, 3545 |
| BpmI | CTGGAG | 5 cut(s) | 1155, 1266, 2445, 2949, 3240 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1801, 2757 |
| BpuEI | CTTGAG | 4 cut(s) | 68, 173, 504, 3309 |
| BpuMI | CCSGG | 4 cut(s) | 1691, 2176, 2916, 3199 |
| BsaAI | YACGTR | 1 cut(s) | 1856 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3318 |
| BsaHI | GRCGYC | 1 cut(s) | 2258 |
| BsaI | GGTCTC | 1 cut(s) | 450 |
| BsaWI | WCCGGW | 3 cut(s) | 2890, 3151, 3371 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3635, 3665 |
| Bse118I | RCCGGY | 3 cut(s) | 118, 3048, 3079 |
| Bse1I | ACTGG | 9 cut(s) | 726, 784, 1172, 1434, 2043, 2127, 2487, 3547, 3640 |
| Bse21I | CCTNAGG | 1 cut(s) | 3607 |
| Bse3DI | GCAATG | 6 cut(s) | 1162, 1920, 2028, 2160, 2301, 3074 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3318 |
| BseAI | TCCGGA | 2 cut(s) | 3151, 3371 |
| BseBI | CCWGG | 8 cut(s) | 199, 966, 1050, 1909, 2667, 2823, 2928, 3065 |
| BseJI | GATNNNNATC | 1 cut(s) | 3318 |
| BseMI | GCAATG | 6 cut(s) | 1162, 1920, 2028, 2160, 2301, 3074 |
| BseMII | CTCAG | 6 cut(s) | 372, 524, 1815, 2771, 3101, 3621 |
| BseNI | ACTGG | 9 cut(s) | 726, 784, 1172, 1434, 2043, 2127, 2487, 3547, 3640 |
| BseRI | GAGGAG | 3 cut(s) | 105, 405, 3023 |
| BseYI | CCCAGC | 3 cut(s) | 851, 1377, 3663 |
| BsgI | GTGCAG | 4 cut(s) | 408, 795, 2134, 3231 |
| Bsh1236I | CGCG | 1 cut(s) | 543 |
| BshNI | GGYRCC | 3 cut(s) | 899, 1450, 2239 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2758, 2785 |
| BsiHKCI | CYCGRG | 2 cut(s) | 230, 1202 |
| BsiWI | CGTACG | 1 cut(s) | 538 |
| BslFI | GGGAC | 7 cut(s) | 212, 604, 766, 852, 1004, 1185, 1326 |
| BsmAI | GTCTC | 4 cut(s) | 450, 708, 1329, 3638 |
| BsmFI | GGGAC | 7 cut(s) | 212, 604, 766, 852, 1004, 1185, 1326 |
| BsmI | GAATGC | 1 cut(s) | 283 |
| Bso31I | GGTCTC | 1 cut(s) | 450 |
| BsoBI | CYCGRG | 2 cut(s) | 230, 1202 |
| Bsp1286I | GDGCHC | 4 cut(s) | 132, 2758, 2785, 3409 |
| Bsp13I | TCCGGA | 2 cut(s) | 3151, 3371 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1801, 2757 |
| Bsp19I | CCATGG | 5 cut(s) | 141, 487, 2249, 2880, 3409 |
| BspACI | CCGC | 8 cut(s) | 168, 1256, 2383, 2840, 3583, 3640, 3661, 3690 |
| BspCNI | CTCAG | 6 cut(s) | 373, 523, 1814, 2770, 3100, 3620 |
| BspEI | TCCGGA | 2 cut(s) | 3151, 3371 |
| BspFNI | CGCG | 1 cut(s) | 543 |
| BspLI | GGNNCC | 9 cut(s) | 782, 901, 1019, 1020, 1347, 1452, 2241, 3321, 3406 |
| BspMI | ACCTGC | 3 cut(s) | 1623, 2683, 2962 |
| BspQI | GCTCTTC | 1 cut(s) | 108 |
| BspT107I | GGYRCC | 3 cut(s) | 899, 1450, 2239 |
| BspTNI | GGTCTC | 1 cut(s) | 450 |
| BsrDI | GCAATG | 6 cut(s) | 1162, 1920, 2028, 2160, 2301, 3074 |
| BsrFI | RCCGGY | 3 cut(s) | 118, 3048, 3079 |
| BsrI | ACTGG | 9 cut(s) | 726, 784, 1172, 1434, 2043, 2127, 2487, 3547, 3640 |
| BssAI | RCCGGY | 3 cut(s) | 118, 3048, 3079 |
| BssNI | GRCGYC | 1 cut(s) | 2258 |
| BssSI | CACGAG | 2 cut(s) | 417, 462 |
| BssT1I | CCWWGG | 9 cut(s) | 141, 487, 970, 2249, 2880, 3172, 3296, 3409, 3422 |
| Bst2BI | CACGAG | 2 cut(s) | 417, 462 |
| Bst2UI | CCWGG | 8 cut(s) | 199, 966, 1050, 1909, 2667, 2823, 2928, 3065 |
| Bst6I | CTCTTC | 6 cut(s) | 102, 108, 760, 2064, 2889, 3258 |
| BstACI | GRCGYC | 1 cut(s) | 2258 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 878, 3193, 3218 |
| BstBAI | YACGTR | 1 cut(s) | 1856 |
| BstDEI | CTNAG | 7 cut(s) | 381, 510, 1801, 2070, 2757, 3087, 3607 |
| BstDSI | CCRYGG | 6 cut(s) | 141, 487, 1276, 2249, 2880, 3409 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 519, 969 |
| BstFNI | CGCG | 1 cut(s) | 543 |
| BstH2I | RGCGCY | 1 cut(s) | 2389 |
| BstHHI | GCGC | 3 cut(s) | 2388, 3279, 3432 |
| BstMAI | GTCTC | 4 cut(s) | 450, 708, 1329, 3638 |
| BstNI | CCWGG | 8 cut(s) | 199, 966, 1050, 1909, 2667, 2823, 2928, 3065 |
| BstNSI | RCATGY | 3 cut(s) | 911, 1324, 2170 |
| BstUI | CGCG | 1 cut(s) | 543 |
| BstV2I | GAAGAC | 5 cut(s) | 108, 156, 166, 1565, 3545 |
| BstX2I | RGATCY | 6 cut(s) | 1132, 1241, 1757, 3040, 3319, 3374 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 630, 1044, 1418, 2250 |
| BstYI | RGATCY | 6 cut(s) | 1132, 1241, 1757, 3040, 3319, 3374 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3607 |
| BsuI | GTATCC | 1 cut(s) | 798 |
| BtgI | CCRYGG | 6 cut(s) | 141, 487, 1276, 2249, 2880, 3409 |
| BtgZI | GCGATG | 2 cut(s) | 268, 558 |
| BtsI | GCAGTG | 1 cut(s) | 396 |
| BtsIMutI | CAGTG | 6 cut(s) | 396, 901, 1150, 1545, 2029, 3480 |
| BveI | ACCTGC | 3 cut(s) | 1623, 2683, 2962 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1808, 3218, 3663 |
| CfoI | GCGC | 3 cut(s) | 2388, 3279, 3432 |
| Cfr10I | RCCGGY | 3 cut(s) | 118, 3048, 3079 |
| CseI | GACGC | 5 cut(s) | 161, 214, 727, 2247, 2351 |
| DdeI | CTNAG | 7 cut(s) | 381, 510, 1801, 2070, 2757, 3087, 3607 |
| DraI | TTTAAA | 2 cut(s) | 1513, 1845 |
| EaeI | YGGCCR | 2 cut(s) | 1046, 3419 |
| Eam1104I | CTCTTC | 6 cut(s) | 102, 108, 760, 2064, 2889, 3258 |
| EarI | CTCTTC | 6 cut(s) | 102, 108, 760, 2064, 2889, 3258 |
| EciI | GGCGGA | 2 cut(s) | 2855, 3705 |
| Ecl136II | GAGCTC | 1 cut(s) | 2756 |
| Eco130I | CCWWGG | 9 cut(s) | 141, 487, 970, 2249, 2880, 3172, 3296, 3409, 3422 |
| Eco24I | GRGCYC | 3 cut(s) | 132, 2758, 3409 |
| Eco31I | GGTCTC | 1 cut(s) | 450 |
| Eco47I | GGWCC | 9 cut(s) | 201, 780, 1018, 1346, 1715, 1831, 2090, 2621, 2951 |
| Eco53kI | GAGCTC | 1 cut(s) | 2756 |
| Eco57I | CTGAAG | 7 cut(s) | 741, 1125, 1376, 2310, 3339, 3456, 3576 |
| Eco81I | CCTNAGG | 1 cut(s) | 3607 |
| Eco88I | CYCGRG | 2 cut(s) | 230, 1202 |
| EcoICRI | GAGCTC | 1 cut(s) | 2756 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 519, 969 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1018, 2951 |
| EcoRII | CCWGG | 8 cut(s) | 197, 964, 1048, 1907, 2665, 2821, 2926, 3063 |
| EcoT14I | CCWWGG | 9 cut(s) | 141, 487, 970, 2249, 2880, 3172, 3296, 3409, 3422 |
| EcoT22I | ATGCAT | 1 cut(s) | 909 |
| EcoT38I | GRGCYC | 3 cut(s) | 132, 2758, 3409 |
| ErhI | CCWWGG | 9 cut(s) | 141, 487, 970, 2249, 2880, 3172, 3296, 3409, 3422 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2458, 2490, 3156, 3188 |
| FaqI | GGGAC | 7 cut(s) | 212, 604, 766, 852, 1004, 1185, 1326 |
| FauI | CCCGC | 1 cut(s) | 3633 |
| FauNDI | CATATG | 2 cut(s) | 1192, 3183 |
| FblI | GTMKAC | 2 cut(s) | 1787, 2340 |
| FriOI | GRGCYC | 3 cut(s) | 132, 2758, 3409 |
| FspBI | CTAG | 8 cut(s) | 717, 858, 971, 2162, 2315, 2454, 3204, 3548 |
| GlaI | GCGC | 3 cut(s) | 2387, 3278, 3431 |
| GsaI | CCCAGC | 3 cut(s) | 855, 1381, 3667 |
| GsuI | CTGGAG | 5 cut(s) | 1155, 1266, 2445, 2949, 3240 |
| HaeII | RGCGCY | 1 cut(s) | 2389 |
| HgaI | GACGC | 5 cut(s) | 161, 214, 727, 2247, 2351 |
| HhaI | GCGC | 3 cut(s) | 2388, 3279, 3432 |
| Hin1I | GRCGYC | 1 cut(s) | 2258 |
| Hin6I | GCGC | 3 cut(s) | 2386, 3277, 3430 |
| HinP1I | GCGC | 3 cut(s) | 2386, 3277, 3430 |
| HincII | GTYRAC | 5 cut(s) | 160, 672, 1788, 1905, 2341 |
| HindII | GTYRAC | 5 cut(s) | 160, 672, 1788, 1905, 2341 |
| HindIII | AAGCTT | 1 cut(s) | 2541 |
| HphI | GGTGA | 4 cut(s) | 1400, 1511, 1679, 3025 |
| Hpy99I | CGWCG | 5 cut(s) | 29, 137, 1789, 2342, 2345 |
| HpyCH4IV | ACGT | 4 cut(s) | 1855, 2270, 2337, 3393 |
| HpyF3I | CTNAG | 7 cut(s) | 381, 510, 1801, 2070, 2757, 3087, 3607 |
| HpySE526I | ACGT | 4 cut(s) | 1855, 2270, 2337, 3393 |
| Hsp92I | GRCGYC | 1 cut(s) | 2258 |
| HspAI | GCGC | 3 cut(s) | 2386, 3277, 3430 |
| KflI | GGGWCCC | 1 cut(s) | 1018 |
| Kpn2I | TCCGGA | 2 cut(s) | 3151, 3371 |
| KpnI | GGTACC | 1 cut(s) | 2243 |
| KroI | GCCGGC | 1 cut(s) | 3048 |
| KroNI | GCCGGC | 1 cut(s) | 3050 |
| LguI | GCTCTTC | 1 cut(s) | 108 |
| LmnI | GCTCC | 5 cut(s) | 2426, 2608, 2780, 2930, 3404 |
| MaeI | CTAG | 8 cut(s) | 717, 858, 971, 2162, 2315, 2454, 3204, 3548 |
| MaeII | ACGT | 4 cut(s) | 1855, 2270, 2337, 3393 |
| MaeIII | GTNAC | 9 cut(s) | 496, 595, 958, 1249, 1517, 2996, 3228, 3389, 3523 |
| MfeI | CAATTG | 4 cut(s) | 924, 1042, 1764, 2559 |
| MflI | RGATCY | 6 cut(s) | 1132, 1241, 1757, 3040, 3319, 3374 |
| MhlI | GDGCHC | 4 cut(s) | 132, 2758, 2785, 3409 |
| MlsI | TGGCCA | 2 cut(s) | 1048, 3421 |
| MluNI | TGGCCA | 2 cut(s) | 1048, 3421 |
| MlyI | GAGTC | 8 cut(s) | 11, 13, 502, 1207, 1214, 1555, 1602, 1951 |
| MmeI | TCCRAC | 2 cut(s) | 1295, 1735 |
| Mox20I | TGGCCA | 2 cut(s) | 1048, 3421 |
| Mph1103I | ATGCAT | 1 cut(s) | 909 |
| MroI | TCCGGA | 2 cut(s) | 3151, 3371 |
| MroNI | GCCGGC | 1 cut(s) | 3048 |
| MroXI | GAANNNNTTC | 1 cut(s) | 687 |
| MscI | TGGCCA | 2 cut(s) | 1048, 3421 |
| MseI | TTAA | 4 cut(s) | 1512, 1749, 1844, 2219 |
| MslI | CAYNNNNRTG | 7 cut(s) | 628, 817, 1665, 1821, 2534, 3035, 3473 |
| Msp20I | TGGCCA | 2 cut(s) | 1048, 3421 |
| MspA1I | CMGCKG | 2 cut(s) | 875, 3663 |
| MunI | CAATTG | 4 cut(s) | 924, 1042, 1764, 2559 |
| Mva1269I | GAATGC | 1 cut(s) | 283 |
| MvaI | CCWGG | 8 cut(s) | 199, 966, 1050, 1909, 2667, 2823, 2928, 3065 |
| MvnI | CGCG | 1 cut(s) | 543 |
| NaeI | GCCGGC | 1 cut(s) | 3050 |
| NciI | CCSGG | 4 cut(s) | 1691, 2176, 2916, 3199 |
| NcoI | CCATGG | 5 cut(s) | 141, 487, 2249, 2880, 3409 |
| NdeI | CATATG | 2 cut(s) | 1192, 3183 |
| NgoMIV | GCCGGC | 1 cut(s) | 3048 |
| NlaIV | GGNNCC | 9 cut(s) | 782, 901, 1019, 1020, 1347, 1452, 2241, 3321, 3406 |
| NmeAIII | GCCGAG | 2 cut(s) | 2023, 2890 |
| NmuCI | GTSAC | 3 cut(s) | 958, 1517, 3389 |
| NsiI | ATGCAT | 1 cut(s) | 909 |
| NspI | RCATGY | 3 cut(s) | 911, 1324, 2170 |
| OliI | CACNNNNGTG | 2 cut(s) | 817, 3473 |
| PaqCI | CACCTGC | 1 cut(s) | 2683 |
| PciI | ACATGT | 1 cut(s) | 1320 |
| PciSI | GCTCTTC | 1 cut(s) | 108 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 132 |
| PctI | GAATGC | 1 cut(s) | 283 |
| PdiI | GCCGGC | 1 cut(s) | 3050 |
| PdmI | GAANNNNTTC | 1 cut(s) | 687 |
| Pfl23II | CGTACG | 1 cut(s) | 538 |
| PflFI | GACNNNGTC | 1 cut(s) | 155 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 555, 1236, 1277, 2822 |
| PleI | GAGTC | 8 cut(s) | 11, 12, 502, 1206, 1213, 1555, 1601, 1950 |
| PpsI | GAGTC | 8 cut(s) | 11, 12, 502, 1206, 1213, 1555, 1601, 1950 |
| Ppu21I | YACGTR | 1 cut(s) | 1856 |
| PpuMI | RGGWCCY | 2 cut(s) | 1018, 2951 |
| PscI | ACATGT | 1 cut(s) | 1320 |
| PshBI | ATTAAT | 1 cut(s) | 1749 |
| Psp124BI | GAGCTC | 1 cut(s) | 2758 |
| Psp1406I | AACGTT | 1 cut(s) | 2270 |
| Psp5II | RGGWCCY | 2 cut(s) | 1018, 2951 |
| Psp6I | CCWGG | 8 cut(s) | 197, 964, 1048, 1907, 2665, 2821, 2926, 3063 |
| PspFI | CCCAGC | 3 cut(s) | 851, 1377, 3663 |
| PspGI | CCWGG | 8 cut(s) | 197, 964, 1048, 1907, 2665, 2821, 2926, 3063 |
| PspLI | CGTACG | 1 cut(s) | 538 |
| PspN4I | GGNNCC | 9 cut(s) | 782, 901, 1019, 1020, 1347, 1452, 2241, 3321, 3406 |
| PspPPI | RGGWCCY | 2 cut(s) | 1018, 2951 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 304, 336 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1808, 3218, 3663 |
| PsuI | RGATCY | 6 cut(s) | 1132, 1241, 1757, 3040, 3319, 3374 |
| PsyI | GACNNNGTC | 1 cut(s) | 155 |
| PvuII | CAGCTG | 1 cut(s) | 875 |
| RseI | CAYNNNNRTG | 7 cut(s) | 628, 817, 1665, 1821, 2534, 3035, 3473 |
| SacI | GAGCTC | 1 cut(s) | 2758 |
| SalI | GTCGAC | 2 cut(s) | 1786, 2339 |
| SapI | GCTCTTC | 1 cut(s) | 108 |
| SaqAI | TTAA | 4 cut(s) | 1512, 1749, 1844, 2219 |
| ScaI | AGTACT | 1 cut(s) | 2037 |
| SchI | GAGTC | 8 cut(s) | 11, 13, 502, 1207, 1214, 1555, 1602, 1951 |
| SduI | GDGCHC | 4 cut(s) | 132, 2758, 2785, 3409 |
| SgrDI | CGTCGACG | 1 cut(s) | 2339 |
| SinI | GGWCC | 9 cut(s) | 201, 780, 1018, 1346, 1715, 1831, 2090, 2621, 2951 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 628, 817, 1665, 1821, 2534, 3035, 3473 |
| SmlI | CTYRAG | 4 cut(s) | 47, 188, 519, 3324 |
| SmoI | CTYRAG | 4 cut(s) | 47, 188, 519, 3324 |
| SpeI | ACTAGT | 1 cut(s) | 2314 |
| SsiI | CCGC | 8 cut(s) | 168, 1256, 2383, 2840, 3583, 3640, 3661, 3690 |
| SspI | AATATT | 1 cut(s) | 1416 |
| SspMI | CTAG | 8 cut(s) | 717, 858, 971, 2162, 2315, 2454, 3204, 3548 |
| SstI | GAGCTC | 1 cut(s) | 2758 |
| StyI | CCWWGG | 9 cut(s) | 141, 487, 970, 2249, 2880, 3172, 3296, 3409, 3422 |
| TaiI | ACGT | 4 cut(s) | 1858, 2273, 2340, 3396 |
| TaqI | TCGA | 5 cut(s) | 1642, 1787, 2100, 2340, 3703 |
| TatI | WGTACW | 3 cut(s) | 650, 2035, 3145 |
| TauI | GCSGC | 4 cut(s) | 170, 2386, 3586, 3663 |
| Tru1I | TTAA | 4 cut(s) | 1512, 1749, 1844, 2219 |
| Tru9I | TTAA | 4 cut(s) | 1512, 1749, 1844, 2219 |
| TscAI | CASTG | 6 cut(s) | 396, 901, 1150, 1552, 2029, 3480 |
| TseFI | GTSAC | 3 cut(s) | 958, 1517, 3389 |
| Tsp45I | GTSAC | 3 cut(s) | 958, 1517, 3389 |
| TspGWI | ACGGA | 1 cut(s) | 3526 |
| TspRI | CASTG | 6 cut(s) | 396, 901, 1150, 1552, 2029, 3480 |
| Tth111I | GACNNNGTC | 1 cut(s) | 155 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 555, 1236, 1277, 2822 |
| VpaK11BI | GGWCC | 9 cut(s) | 201, 780, 1018, 1346, 1715, 1831, 2090, 2621, 2951 |
| VspI | ATTAAT | 1 cut(s) | 1749 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 519, 969 |
| XapI | RAATTY | 2 cut(s) | 686, 709 |
| XbaI | TCTAGA | 2 cut(s) | 2161, 3547 |
| XceI | RCATGY | 3 cut(s) | 911, 1324, 2170 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1751, 2426, 3264 |
| XmaJI | CCTAGG | 1 cut(s) | 970 |
| XmiI | GTMKAC | 2 cut(s) | 1787, 2340 |
| XmnI | GAANNNNTTC | 1 cut(s) | 687 |
| XspI | CTAG | 8 cut(s) | 717, 858, 971, 2162, 2315, 2454, 3204, 3548 |
| ZrmI | AGTACT | 1 cut(s) | 2037 |
| Zsp2I | ATGCAT | 1 cut(s) | 909 |