mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G04920 AT4G04920 AT4G04920 |
| fragaria_vesca | FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 |
| malus_domestica | MD01G1005800.v1.1 MD05G1316200.v1.1 MD10G1296700.v1.1 |
| prunus_persica | Prupe.4G043900_v2.0.a1 Prupe.4G043900_v2.0.a1 |
| pyrus_communis | pycom05g29330 pycom10g24950 |
| rosa_chinensis | RchiOBHm_Chr5g0008021 |
| rosa_laevigata | RLG00000031528 |
| rosa_multiflora | Rmu_sc0007348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068450 |
| rosa_rugosa | Rorug04G0432600 |
| rosa_samantha | Rh5AG060700 Rh5BG057500 Rh5CG067600 Rh5DG056700 |
| rosa_wichuraiana | Rw5G005990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 875, 1846, 2662 |
| Acc36I | ACCTGC | 7 cut(s) | 875, 1010, 1593, 1846, 2662, 2917, 2944 |
| AccB1I | GGYRCC | 2 cut(s) | 1420, 2534 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1206, 3799 |
| AccBSI | CCGCTC | 1 cut(s) | 3615 |
| AccI | GTMKAC | 2 cut(s) | 12, 1462 |
| AccII | CGCG | 1 cut(s) | 3722 |
| AccIII | TCCGGA | 1 cut(s) | 3289 |
| AciI | CCGC | 8 cut(s) | 183, 1665, 2353, 3081, 3097, 3615, 3636, 3722 |
| AclI | AACGTT | 1 cut(s) | 1722 |
| AcoI | YGGCCR | 2 cut(s) | 2382, 3401 |
| AcsI | RAATTY | 4 cut(s) | 327, 701, 724, 1150 |
| AcuI | CTGAAG | 3 cut(s) | 2280, 3264, 3551 |
| AcvI | CACGTG | 1 cut(s) | 1206 |
| AcyI | GRCGYC | 1 cut(s) | 162 |
| AdeI | CACNNNGTG | 2 cut(s) | 1206, 1961 |
| AflIII | ACRYGT | 3 cut(s) | 1290, 1457, 1825 |
| AhlI | ACTAGT | 1 cut(s) | 3592 |
| AjnI | CCWGG | 5 cut(s) | 212, 934, 2644, 2800, 2809 |
| AleI | CACNNNNGTG | 2 cut(s) | 787, 3455 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3659, 3691 |
| Alw26I | GTCTC | 2 cut(s) | 756, 3613 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 734, 1745, 1778, 3638 |
| Ama87I | CYCGRG | 2 cut(s) | 1245, 2889 |
| Aor13HI | TCCGGA | 1 cut(s) | 3289 |
| ApoI | RAATTY | 4 cut(s) | 327, 701, 724, 1150 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 668, 700 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| AspLEI | GCGC | 3 cut(s) | 821, 2358, 3414 |
| AsuC2I | CCSGG | 1 cut(s) | 3181 |
| AsuHPI | GGTGA | 6 cut(s) | 453, 627, 1481, 1649, 2246, 3007 |
| AsuNHI | GCTAGC | 1 cut(s) | 563 |
| AvaI | CYCGRG | 2 cut(s) | 1245, 2889 |
| AvaII | GGWCC | 8 cut(s) | 988, 1316, 1685, 1801, 2060, 2486, 2600, 2933 |
| AxyI | CCTNAGG | 1 cut(s) | 1173 |
| BaeGI | GKGCMC | 1 cut(s) | 2574 |
| BalI | TGGCCA | 1 cut(s) | 2384 |
| BanI | GGYRCC | 2 cut(s) | 1420, 2534 |
| BanII | GRGCYC | 6 cut(s) | 33, 132, 204, 1172, 2809, 3391 |
| BauI | CACGAG | 2 cut(s) | 432, 477 |
| BbrPI | CACGTG | 1 cut(s) | 1206 |
| BbsI | GAAGAC | 4 cut(s) | 165, 181, 1535, 3527 |
| BbvCI | CCTCAGC | 1 cut(s) | 2796 |
| BceAI | ACGGC | 2 cut(s) | 170, 3574 |
| BciT130I | CCWGG | 5 cut(s) | 214, 936, 2646, 2802, 2811 |
| BciVI | GTATCC | 1 cut(s) | 2972 |
| BcnI | CCSGG | 1 cut(s) | 3181 |
| BcoDI | GTCTC | 2 cut(s) | 756, 3613 |
| BcuI | ACTAGT | 1 cut(s) | 3592 |
| BfmI | CTRYAG | 4 cut(s) | 777, 1179, 1224, 2910 |
| BfoI | RGCGCY | 2 cut(s) | 822, 2359 |
| BfuAI | ACCTGC | 7 cut(s) | 875, 1010, 1593, 1846, 2662, 2917, 2944 |
| BfuI | GTATCC | 1 cut(s) | 2972 |
| BglII | AGATCT | 1 cut(s) | 3839 |
| BlpI | GCTNAGC | 1 cut(s) | 1771 |
| BmcAI | AGTACT | 1 cut(s) | 775 |
| Bme1390I | CCNGG | 6 cut(s) | 214, 936, 2646, 2802, 2811, 3181 |
| Bme18I | GGWCC | 8 cut(s) | 988, 1316, 1685, 1801, 2060, 2486, 2600, 2933 |
| BmeT110I | CYCGRG | 2 cut(s) | 1245, 2889 |
| BmiI | GGNNCC | 7 cut(s) | 989, 990, 1317, 1422, 2536, 2808, 3388 |
| BmrFI | CCNGG | 6 cut(s) | 214, 936, 2646, 2802, 2811, 3181 |
| BmrI | ACTGGG | 2 cut(s) | 2763, 3338 |
| BmtI | GCTAGC | 1 cut(s) | 567 |
| BmuI | ACTGGG | 2 cut(s) | 2763, 3338 |
| BpiI | GAAGAC | 4 cut(s) | 165, 181, 1535, 3527 |
| BpmI | CTGGAG | 2 cut(s) | 1125, 1236 |
| Bpu10I | CCTNAGC | 2 cut(s) | 246, 2796 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1771 |
| BpuEI | CTTGAG | 3 cut(s) | 188, 519, 3690 |
| BpuMI | CCSGG | 1 cut(s) | 3181 |
| BsaAI | YACGTR | 4 cut(s) | 557, 958, 1206, 1826 |
| BsaHI | GRCGYC | 1 cut(s) | 162 |
| BsaI | GGTCTC | 1 cut(s) | 756 |
| BsaWI | WCCGGW | 2 cut(s) | 2869, 3289 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 152, 182, 2440, 2470, 3610, 3640 |
| Bse1I | ACTGG | 7 cut(s) | 1142, 1367, 2413, 2758, 3062, 3344, 3529 |
| Bse21I | CCTNAGG | 1 cut(s) | 1173 |
| Bse3DI | GCAATG | 9 cut(s) | 952, 988, 1132, 1260, 1998, 2130, 2271, 2538, 3056 |
| BseAI | TCCGGA | 1 cut(s) | 3289 |
| BseBI | CCWGG | 5 cut(s) | 214, 936, 2646, 2802, 2811 |
| BseMI | GCAATG | 9 cut(s) | 952, 988, 1132, 1260, 1998, 2130, 2271, 2538, 3056 |
| BseNI | ACTGG | 7 cut(s) | 1142, 1367, 2413, 2758, 3062, 3344, 3529 |
| BseRI | GAGGAG | 4 cut(s) | 157, 420, 2888, 3005 |
| BseSI | GKGCMC | 1 cut(s) | 2574 |
| BseYI | CCCAGC | 4 cut(s) | 32, 821, 1347, 3638 |
| BsgI | GTGCAG | 2 cut(s) | 423, 2745 |
| Bsh1236I | CGCG | 1 cut(s) | 3722 |
| BshNI | GGYRCC | 2 cut(s) | 1420, 2534 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1245, 2889 |
| BsiSI | CCGG | 3 cut(s) | 2870, 3181, 3290 |
| BslFI | GGGAC | 4 cut(s) | 227, 822, 974, 1296 |
| BsmAI | GTCTC | 2 cut(s) | 756, 3613 |
| BsmFI | GGGAC | 4 cut(s) | 227, 822, 974, 1296 |
| BsmI | GAATGC | 1 cut(s) | 298 |
| Bso31I | GGTCTC | 1 cut(s) | 756 |
| BsoBI | CYCGRG | 2 cut(s) | 1245, 2889 |
| Bsp1286I | GDGCHC | 7 cut(s) | 33, 132, 204, 1172, 2574, 2809, 3391 |
| Bsp13I | TCCGGA | 1 cut(s) | 3289 |
| Bsp1407I | TGTACA | 1 cut(s) | 1952 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1771 |
| Bsp19I | CCATGG | 1 cut(s) | 2219 |
| BspACI | CCGC | 8 cut(s) | 183, 1665, 2353, 3081, 3097, 3615, 3636, 3722 |
| BspEI | TCCGGA | 1 cut(s) | 3289 |
| BspFNI | CGCG | 1 cut(s) | 3722 |
| BspHI | TCATGA | 1 cut(s) | 3337 |
| BspLI | GGNNCC | 7 cut(s) | 989, 990, 1317, 1422, 2536, 2808, 3388 |
| BspMAI | CTGCAG | 4 cut(s) | 781, 1183, 1228, 2914 |
| BspMI | ACCTGC | 7 cut(s) | 875, 1010, 1593, 1846, 2662, 2917, 2944 |
| BspOI | GCTAGC | 1 cut(s) | 567 |
| BspQI | GCTCTTC | 1 cut(s) | 120 |
| BspT107I | GGYRCC | 2 cut(s) | 1420, 2534 |
| BspTNI | GGTCTC | 1 cut(s) | 756 |
| BsrBI | CCGCTC | 1 cut(s) | 3615 |
| BsrDI | GCAATG | 9 cut(s) | 952, 988, 1132, 1260, 1998, 2130, 2271, 2538, 3056 |
| BsrGI | TGTACA | 1 cut(s) | 1952 |
| BsrI | ACTGG | 7 cut(s) | 1142, 1367, 2413, 2758, 3062, 3344, 3529 |
| BssNAI | GTATAC | 1 cut(s) | 1463 |
| BssNI | GRCGYC | 1 cut(s) | 162 |
| BssSI | CACGAG | 2 cut(s) | 432, 477 |
| BssT1I | CCWWGG | 4 cut(s) | 940, 2219, 3278, 3582 |
| Bst1107I | GTATAC | 1 cut(s) | 1463 |
| Bst2BI | CACGAG | 2 cut(s) | 432, 477 |
| Bst2UI | CCWGG | 5 cut(s) | 214, 936, 2646, 2802, 2811 |
| Bst6I | CTCTTC | 3 cut(s) | 120, 2034, 3240 |
| BstACI | GRCGYC | 1 cut(s) | 162 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1745, 3175 |
| BstAUI | TGTACA | 1 cut(s) | 1952 |
| BstBAI | YACGTR | 4 cut(s) | 557, 958, 1206, 1826 |
| BstDSI | CCRYGG | 2 cut(s) | 2219, 3391 |
| BstEII | GGTNACC | 1 cut(s) | 459 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 534 |
| BstFNI | CGCG | 1 cut(s) | 3722 |
| BstH2I | RGCGCY | 2 cut(s) | 822, 2359 |
| BstHHI | GCGC | 3 cut(s) | 821, 2358, 3414 |
| BstMAI | GTCTC | 2 cut(s) | 756, 3613 |
| BstNI | CCWGG | 5 cut(s) | 214, 936, 2646, 2802, 2811 |
| BstNSI | RCATGY | 5 cut(s) | 1294, 1461, 2140, 2164, 2788 |
| BstPI | GGTNACC | 1 cut(s) | 459 |
| BstSCI | CCNGG | 6 cut(s) | 212, 934, 2644, 2800, 2809, 3179 |
| BstSFI | CTRYAG | 4 cut(s) | 777, 1179, 1224, 2910 |
| BstSLI | GKGCMC | 1 cut(s) | 2574 |
| BstUI | CGCG | 1 cut(s) | 3722 |
| BstV2I | GAAGAC | 4 cut(s) | 165, 181, 1535, 3527 |
| BstX2I | RGATCY | 4 cut(s) | 1211, 1727, 3022, 3839 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 357, 1014 |
| BstYI | RGATCY | 4 cut(s) | 1211, 1727, 3022, 3839 |
| BstZ17I | GTATAC | 1 cut(s) | 1463 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1173 |
| BsuI | GTATCC | 1 cut(s) | 2972 |
| BtgI | CCRYGG | 2 cut(s) | 2219, 3391 |
| BtsIMutI | CAGTG | 4 cut(s) | 1120, 1999, 2406, 2602 |
| BveI | ACCTGC | 7 cut(s) | 875, 1010, 1593, 1846, 2662, 2917, 2944 |
| CaiI | CAGNNNCTG | 4 cut(s) | 734, 1745, 1778, 3638 |
| CciI | TCATGA | 1 cut(s) | 3337 |
| CfoI | GCGC | 3 cut(s) | 821, 2358, 3414 |
| CseI | GACGC | 2 cut(s) | 170, 229 |
| DraI | TTTAAA | 2 cut(s) | 1483, 1815 |
| DraIII | CACNNNGTG | 2 cut(s) | 1206, 1961 |
| EaeI | YGGCCR | 2 cut(s) | 2382, 3401 |
| Eam1104I | CTCTTC | 3 cut(s) | 120, 2034, 3240 |
| EarI | CTCTTC | 3 cut(s) | 120, 2034, 3240 |
| EciI | GGCGGA | 1 cut(s) | 172 |
| Eco130I | CCWWGG | 4 cut(s) | 940, 2219, 3278, 3582 |
| Eco24I | GRGCYC | 6 cut(s) | 33, 132, 204, 1172, 2809, 3391 |
| Eco31I | GGTCTC | 1 cut(s) | 756 |
| Eco47I | GGWCC | 8 cut(s) | 988, 1316, 1685, 1801, 2060, 2486, 2600, 2933 |
| Eco57I | CTGAAG | 3 cut(s) | 2280, 3264, 3551 |
| Eco72I | CACGTG | 1 cut(s) | 1206 |
| Eco81I | CCTNAGG | 1 cut(s) | 1173 |
| Eco88I | CYCGRG | 2 cut(s) | 1245, 2889 |
| Eco91I | GGTNACC | 1 cut(s) | 459 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 534 |
| EcoO109I | RGGNCCY | 3 cut(s) | 988, 1316, 2933 |
| EcoO65I | GGTNACC | 1 cut(s) | 459 |
| EcoRI | GAATTC | 2 cut(s) | 327, 724 |
| EcoRII | CCWGG | 5 cut(s) | 212, 934, 2644, 2800, 2809 |
| EcoT14I | CCWWGG | 4 cut(s) | 940, 2219, 3278, 3582 |
| EcoT38I | GRGCYC | 6 cut(s) | 33, 132, 204, 1172, 2809, 3391 |
| ErhI | CCWWGG | 4 cut(s) | 940, 2219, 3278, 3582 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 655, 687, 797, 829 |
| FaqI | GGGAC | 4 cut(s) | 227, 822, 974, 1296 |
| FauI | CCCGC | 2 cut(s) | 1658, 3608 |
| FauNDI | CATATG | 2 cut(s) | 1162, 3165 |
| FblI | GTMKAC | 2 cut(s) | 12, 1462 |
| FriOI | GRGCYC | 6 cut(s) | 33, 132, 204, 1172, 2809, 3391 |
| GlaI | GCGC | 3 cut(s) | 820, 2357, 3413 |
| GsaI | CCCAGC | 4 cut(s) | 36, 825, 1351, 3642 |
| GsuI | CTGGAG | 2 cut(s) | 1125, 1236 |
| HaeII | RGCGCY | 2 cut(s) | 822, 2359 |
| HapII | CCGG | 3 cut(s) | 2870, 3181, 3290 |
| HgaI | GACGC | 2 cut(s) | 170, 229 |
| HhaI | GCGC | 3 cut(s) | 821, 2358, 3414 |
| Hin1I | GRCGYC | 1 cut(s) | 162 |
| Hin6I | GCGC | 3 cut(s) | 819, 2356, 3412 |
| HinP1I | GCGC | 3 cut(s) | 819, 2356, 3412 |
| HincII | GTYRAC | 3 cut(s) | 13, 687, 1705 |
| HindII | GTYRAC | 3 cut(s) | 13, 687, 1705 |
| HindIII | AAGCTT | 1 cut(s) | 2520 |
| HpaII | CCGG | 3 cut(s) | 2870, 3181, 3290 |
| HphI | GGTGA | 6 cut(s) | 453, 627, 1481, 1649, 2246, 3007 |
| Hpy99I | CGWCG | 4 cut(s) | 17, 29, 143, 146 |
| HpyCH4IV | ACGT | 9 cut(s) | 556, 879, 957, 1205, 1722, 1825, 1877, 1885, 2307 |
| HpySE526I | ACGT | 9 cut(s) | 556, 879, 957, 1205, 1722, 1825, 1877, 1885, 2307 |
| Hsp92I | GRCGYC | 1 cut(s) | 162 |
| HspAI | GCGC | 3 cut(s) | 819, 2356, 3412 |
| KflI | GGGWCCC | 1 cut(s) | 988 |
| Kpn2I | TCCGGA | 1 cut(s) | 3289 |
| LguI | GCTCTTC | 1 cut(s) | 120 |
| LmnI | GCTCC | 4 cut(s) | 231, 1747, 2812, 3386 |
| MaeII | ACGT | 9 cut(s) | 556, 879, 957, 1205, 1722, 1825, 1877, 1885, 2307 |
| MbiI | CCGCTC | 1 cut(s) | 3615 |
| MfeI | CAATTG | 5 cut(s) | 48, 894, 1012, 1734, 1890 |
| MflI | RGATCY | 4 cut(s) | 1211, 1727, 3022, 3839 |
| MhlI | GDGCHC | 7 cut(s) | 33, 132, 204, 1172, 2574, 2809, 3391 |
| MlsI | TGGCCA | 1 cut(s) | 2384 |
| MluNI | TGGCCA | 1 cut(s) | 2384 |
| MlyI | GAGTC | 7 cut(s) | 13, 517, 804, 1572, 1921, 2887, 3697 |
| MmeI | TCCRAC | 3 cut(s) | 1265, 1705, 1903 |
| Mox20I | TGGCCA | 1 cut(s) | 2384 |
| MroI | TCCGGA | 1 cut(s) | 3289 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MscI | TGGCCA | 1 cut(s) | 2384 |
| MseI | TTAA | 7 cut(s) | 417, 1482, 1719, 1814, 3446, 3758, 3859 |
| MslI | CAYNNNNRTG | 7 cut(s) | 787, 1635, 1876, 2513, 3017, 3092, 3455 |
| Msp20I | TGGCCA | 1 cut(s) | 2384 |
| MspA1I | CMGCKG | 3 cut(s) | 570, 1499, 3638 |
| MspI | CCGG | 3 cut(s) | 2870, 3181, 3290 |
| MspR9I | CCNGG | 6 cut(s) | 214, 936, 2646, 2802, 2811, 3181 |
| MunI | CAATTG | 5 cut(s) | 48, 894, 1012, 1734, 1890 |
| Mva1269I | GAATGC | 1 cut(s) | 298 |
| MvaI | CCWGG | 5 cut(s) | 214, 936, 2646, 2802, 2811 |
| MvnI | CGCG | 1 cut(s) | 3722 |
| NciI | CCSGG | 1 cut(s) | 3181 |
| NcoI | CCATGG | 1 cut(s) | 2219 |
| NdeI | CATATG | 2 cut(s) | 1162, 3165 |
| NheI | GCTAGC | 1 cut(s) | 563 |
| NlaIV | GGNNCC | 7 cut(s) | 989, 990, 1317, 1422, 2536, 2808, 3388 |
| NmeAIII | GCCGAG | 2 cut(s) | 3135, 3429 |
| NmuCI | GTSAC | 4 cut(s) | 459, 633, 928, 1487 |
| NspI | RCATGY | 5 cut(s) | 1294, 1461, 2140, 2164, 2788 |
| OliI | CACNNNNGTG | 2 cut(s) | 787, 3455 |
| PagI | TCATGA | 1 cut(s) | 3337 |
| PaqCI | CACCTGC | 3 cut(s) | 875, 1846, 2662 |
| PciI | ACATGT | 2 cut(s) | 1290, 1457 |
| PciSI | GCTCTTC | 1 cut(s) | 120 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 21, 168 |
| PctI | GAATGC | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PflFI | GACNNNGTC | 1 cut(s) | 3344 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1206, 3799 |
| PfoI | TCCNGGA | 1 cut(s) | 2644 |
| PleI | GAGTC | 7 cut(s) | 12, 517, 804, 1571, 1920, 2886, 3697 |
| PmaCI | CACGTG | 1 cut(s) | 1206 |
| PmlI | CACGTG | 1 cut(s) | 1206 |
| PpsI | GAGTC | 7 cut(s) | 12, 517, 804, 1571, 1920, 2886, 3697 |
| Ppu21I | YACGTR | 4 cut(s) | 557, 958, 1206, 1826 |
| PpuMI | RGGWCCY | 3 cut(s) | 988, 1316, 2933 |
| PscI | ACATGT | 2 cut(s) | 1290, 1457 |
| Psp1406I | AACGTT | 1 cut(s) | 1722 |
| Psp5II | RGGWCCY | 3 cut(s) | 988, 1316, 2933 |
| Psp6I | CCWGG | 5 cut(s) | 212, 934, 2644, 2800, 2809 |
| PspCI | CACGTG | 1 cut(s) | 1206 |
| PspEI | GGTNACC | 1 cut(s) | 459 |
| PspFI | CCCAGC | 4 cut(s) | 32, 821, 1347, 3638 |
| PspGI | CCWGG | 5 cut(s) | 212, 934, 2644, 2800, 2809 |
| PspN4I | GGNNCC | 7 cut(s) | 989, 990, 1317, 1422, 2536, 2808, 3388 |
| PspPPI | RGGWCCY | 3 cut(s) | 988, 1316, 2933 |
| PstI | CTGCAG | 4 cut(s) | 781, 1183, 1228, 2914 |
| PstNI | CAGNNNCTG | 4 cut(s) | 734, 1745, 1778, 3638 |
| PsuI | RGATCY | 4 cut(s) | 1211, 1727, 3022, 3839 |
| PsyI | GACNNNGTC | 1 cut(s) | 3344 |
| PvuII | CAGCTG | 2 cut(s) | 570, 1499 |
| RseI | CAYNNNNRTG | 7 cut(s) | 787, 1635, 1876, 2513, 3017, 3092, 3455 |
| SalI | GTCGAC | 1 cut(s) | 11 |
| SapI | GCTCTTC | 1 cut(s) | 120 |
| SaqAI | TTAA | 7 cut(s) | 417, 1482, 1719, 1814, 3446, 3758, 3859 |
| ScaI | AGTACT | 1 cut(s) | 775 |
| SchI | GAGTC | 7 cut(s) | 13, 517, 804, 1572, 1921, 2887, 3697 |
| ScrFI | CCNGG | 6 cut(s) | 214, 936, 2646, 2802, 2811, 3181 |
| SduI | GDGCHC | 7 cut(s) | 33, 132, 204, 1172, 2574, 2809, 3391 |
| SfcI | CTRYAG | 4 cut(s) | 777, 1179, 1224, 2910 |
| SinI | GGWCC | 8 cut(s) | 988, 1316, 1685, 1801, 2060, 2486, 2600, 2933 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 787, 1635, 1876, 2513, 3017, 3092, 3455 |
| SmlI | CTYRAG | 3 cut(s) | 203, 534, 3705 |
| SmoI | CTYRAG | 3 cut(s) | 203, 534, 3705 |
| SpeI | ACTAGT | 1 cut(s) | 3592 |
| SsiI | CCGC | 8 cut(s) | 183, 1665, 2353, 3081, 3097, 3615, 3636, 3722 |
| SspI | AATATT | 2 cut(s) | 1386, 2296 |
| StyD4I | CCNGG | 6 cut(s) | 212, 934, 2644, 2800, 2809, 3179 |
| StyI | CCWWGG | 4 cut(s) | 940, 2219, 3278, 3582 |
| TaiI | ACGT | 9 cut(s) | 559, 882, 960, 1208, 1725, 1828, 1880, 1888, 2310 |
| TaqI | TCGA | 5 cut(s) | 12, 1612, 1757, 3348, 3678 |
| TatI | WGTACW | 3 cut(s) | 773, 1952, 3832 |
| TauI | GCSGC | 4 cut(s) | 2356, 3084, 3100, 3638 |
| Tru1I | TTAA | 7 cut(s) | 417, 1482, 1719, 1814, 3446, 3758, 3859 |
| Tru9I | TTAA | 7 cut(s) | 417, 1482, 1719, 1814, 3446, 3758, 3859 |
| TscAI | CASTG | 4 cut(s) | 1120, 1999, 2413, 2602 |
| TseFI | GTSAC | 4 cut(s) | 459, 633, 928, 1487 |
| Tsp45I | GTSAC | 4 cut(s) | 459, 633, 928, 1487 |
| TspGWI | ACGGA | 4 cut(s) | 160, 1348, 3274, 3508 |
| TspRI | CASTG | 4 cut(s) | 1120, 1999, 2413, 2602 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3344 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1206, 3799 |
| VpaK11BI | GGWCC | 8 cut(s) | 988, 1316, 1685, 1801, 2060, 2486, 2600, 2933 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 534 |
| XapI | RAATTY | 4 cut(s) | 327, 701, 724, 1150 |
| XbaI | TCTAGA | 3 cut(s) | 2068, 2131, 3307 |
| XceI | RCATGY | 5 cut(s) | 1294, 1461, 2140, 2164, 2788 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1721 |
| XmiI | GTMKAC | 2 cut(s) | 12, 1462 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| ZrmI | AGTACT | 1 cut(s) | 775 |