mediator of RNA polymerase II transcription subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G04920 AT4G04920 AT4G04920 |
| fragaria_vesca | FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 FvH4_3g04860 |
| malus_domestica | MD01G1005800.v1.1 MD05G1316200.v1.1 MD10G1296700.v1.1 |
| prunus_persica | Prupe.4G043900_v2.0.a1 Prupe.4G043900_v2.0.a1 |
| pyrus_communis | pycom05g29330 pycom10g24950 |
| rosa_chinensis | RchiOBHm_Chr5g0008021 |
| rosa_laevigata | RLG00000031528 |
| rosa_multiflora | Rmu_sc0007348.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00068450 |
| rosa_rugosa | Rorug04G0432600 |
| rosa_samantha | Rh5AG060700 Rh5BG057500 Rh5CG067600 Rh5DG056700 |
| rosa_wichuraiana | Rw5G005990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 920, 2707 |
| Acc36I | ACCTGC | 6 cut(s) | 920, 1055, 1638, 2707, 2962, 2989 |
| AccB1I | GGYRCC | 2 cut(s) | 1465, 2579 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1251, 3799 |
| AccBSI | CCGCTC | 1 cut(s) | 3667 |
| AccI | GTMKAC | 2 cut(s) | 12, 1507 |
| AciI | CCGC | 8 cut(s) | 183, 282, 1884, 2398, 2419, 3142, 3667, 3688 |
| AclI | AACGTT | 1 cut(s) | 1767 |
| AcoI | YGGCCR | 3 cut(s) | 737, 2427, 3446 |
| AcsI | RAATTY | 6 cut(s) | 327, 701, 724, 742, 1195, 3843 |
| AcuI | CTGAAG | 2 cut(s) | 2325, 3603 |
| AcvI | CACGTG | 1 cut(s) | 1251 |
| AcyI | GRCGYC | 1 cut(s) | 162 |
| AdeI | CACNNNGTG | 2 cut(s) | 1251, 2006 |
| AflIII | ACRYGT | 3 cut(s) | 1335, 1502, 1870 |
| AhlI | ACTAGT | 1 cut(s) | 3644 |
| AjnI | CCWGG | 6 cut(s) | 212, 979, 2689, 2845, 2854, 3090 |
| AleI | CACNNNNGTG | 2 cut(s) | 832, 3500 |
| Alw26I | GTCTC | 2 cut(s) | 801, 3665 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 779, 1823, 3690 |
| Ama87I | CYCGRG | 2 cut(s) | 1290, 2934 |
| ApoI | RAATTY | 6 cut(s) | 327, 701, 724, 742, 1195, 3843 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 668, 700 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 702 |
| AspLEI | GCGC | 2 cut(s) | 866, 3459 |
| AsuC2I | CCSGG | 1 cut(s) | 3226 |
| AsuHPI | GGTGA | 6 cut(s) | 453, 627, 1526, 1694, 2291, 3052 |
| AsuNHI | GCTAGC | 1 cut(s) | 563 |
| AvaI | CYCGRG | 2 cut(s) | 1290, 2934 |
| AvaII | GGWCC | 9 cut(s) | 216, 1033, 1361, 1730, 1846, 2105, 2531, 2645, 2978 |
| AxyI | CCTNAGG | 1 cut(s) | 1218 |
| BaeGI | GKGCMC | 1 cut(s) | 2619 |
| BalI | TGGCCA | 2 cut(s) | 739, 2429 |
| BanI | GGYRCC | 2 cut(s) | 1465, 2579 |
| BanII | GRGCYC | 6 cut(s) | 33, 132, 204, 1217, 2854, 3436 |
| BauI | CACGAG | 2 cut(s) | 432, 477 |
| BbrPI | CACGTG | 1 cut(s) | 1251 |
| BbsI | GAAGAC | 4 cut(s) | 165, 181, 1580, 3572 |
| BbvCI | CCTCAGC | 2 cut(s) | 2841, 3288 |
| BceAI | ACGGC | 3 cut(s) | 170, 3626, 3749 |
| BciT130I | CCWGG | 6 cut(s) | 214, 981, 2691, 2847, 2856, 3092 |
| BciVI | GTATCC | 1 cut(s) | 3017 |
| BcnI | CCSGG | 1 cut(s) | 3226 |
| BcoDI | GTCTC | 2 cut(s) | 801, 3665 |
| BcuI | ACTAGT | 1 cut(s) | 3644 |
| BfmI | CTRYAG | 4 cut(s) | 822, 1224, 1269, 2955 |
| BfoI | RGCGCY | 1 cut(s) | 867 |
| BfuAI | ACCTGC | 6 cut(s) | 920, 1055, 1638, 2707, 2962, 2989 |
| BfuI | GTATCC | 1 cut(s) | 3017 |
| BlpI | GCTNAGC | 1 cut(s) | 1816 |
| BmcAI | AGTACT | 1 cut(s) | 820 |
| Bme1390I | CCNGG | 7 cut(s) | 214, 981, 2691, 2847, 2856, 3092, 3226 |
| Bme18I | GGWCC | 9 cut(s) | 216, 1033, 1361, 1730, 1846, 2105, 2531, 2645, 2978 |
| BmeT110I | CYCGRG | 2 cut(s) | 1290, 2934 |
| BmiI | GGNNCC | 7 cut(s) | 1034, 1035, 1362, 1467, 2581, 2853, 3433 |
| BmrFI | CCNGG | 7 cut(s) | 214, 981, 2691, 2847, 2856, 3092, 3226 |
| BmrI | ACTGGG | 2 cut(s) | 2808, 3383 |
| BmtI | GCTAGC | 1 cut(s) | 567 |
| BmuI | ACTGGG | 2 cut(s) | 2808, 3383 |
| BpiI | GAAGAC | 4 cut(s) | 165, 181, 1580, 3572 |
| BpmI | CTGGAG | 2 cut(s) | 1170, 3267 |
| Bpu10I | CCTNAGC | 3 cut(s) | 246, 2841, 3288 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1816 |
| BpuEI | CTTGAG | 2 cut(s) | 188, 519 |
| BpuMI | CCSGG | 1 cut(s) | 3226 |
| BsaAI | YACGTR | 3 cut(s) | 557, 1251, 1871 |
| BsaHI | GRCGYC | 1 cut(s) | 162 |
| BsaI | GGTCTC | 1 cut(s) | 801 |
| BsaWI | WCCGGW | 1 cut(s) | 2914 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 152, 182, 2485, 2515, 3662, 3692 |
| Bse1I | ACTGG | 7 cut(s) | 1187, 1412, 2458, 2803, 3107, 3389, 3574 |
| Bse21I | CCTNAGG | 1 cut(s) | 1218 |
| Bse3DI | GCAATG | 9 cut(s) | 997, 1033, 1177, 1305, 2043, 2175, 2316, 2583, 3101 |
| BseBI | CCWGG | 6 cut(s) | 214, 981, 2691, 2847, 2856, 3092 |
| BseGI | GGATG | 8 cut(s) | 1382, 1400, 1990, 2894, 3057, 3097, 3194, 3343 |
| BseMI | GCAATG | 9 cut(s) | 997, 1033, 1177, 1305, 2043, 2175, 2316, 2583, 3101 |
| BseNI | ACTGG | 7 cut(s) | 1187, 1412, 2458, 2803, 3107, 3389, 3574 |
| BseRI | GAGGAG | 5 cut(s) | 157, 420, 2933, 3050, 3305 |
| BseSI | GKGCMC | 1 cut(s) | 2619 |
| BseYI | CCCAGC | 4 cut(s) | 32, 866, 1392, 3690 |
| BsgI | GTGCAG | 2 cut(s) | 423, 2790 |
| BshNI | GGYRCC | 2 cut(s) | 1465, 2579 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1290, 2934 |
| BsiSI | CCGG | 2 cut(s) | 2915, 3226 |
| BslFI | GGGAC | 4 cut(s) | 227, 867, 1019, 1341 |
| BsmAI | GTCTC | 2 cut(s) | 801, 3665 |
| BsmFI | GGGAC | 4 cut(s) | 227, 867, 1019, 1341 |
| BsmI | GAATGC | 1 cut(s) | 298 |
| Bso31I | GGTCTC | 1 cut(s) | 801 |
| BsoBI | CYCGRG | 2 cut(s) | 1290, 2934 |
| Bsp1286I | GDGCHC | 7 cut(s) | 33, 132, 204, 1217, 2619, 2854, 3436 |
| Bsp1407I | TGTACA | 1 cut(s) | 1997 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1816 |
| Bsp19I | CCATGG | 1 cut(s) | 2264 |
| BspACI | CCGC | 8 cut(s) | 183, 282, 1884, 2398, 2419, 3142, 3667, 3688 |
| BspHI | TCATGA | 1 cut(s) | 3382 |
| BspLI | GGNNCC | 7 cut(s) | 1034, 1035, 1362, 1467, 2581, 2853, 3433 |
| BspMAI | CTGCAG | 4 cut(s) | 826, 1228, 1273, 2959 |
| BspMI | ACCTGC | 6 cut(s) | 920, 1055, 1638, 2707, 2962, 2989 |
| BspOI | GCTAGC | 1 cut(s) | 567 |
| BspQI | GCTCTTC | 1 cut(s) | 120 |
| BspT107I | GGYRCC | 2 cut(s) | 1465, 2579 |
| BspTNI | GGTCTC | 1 cut(s) | 801 |
| BsrBI | CCGCTC | 1 cut(s) | 3667 |
| BsrDI | GCAATG | 9 cut(s) | 997, 1033, 1177, 1305, 2043, 2175, 2316, 2583, 3101 |
| BsrGI | TGTACA | 1 cut(s) | 1997 |
| BsrI | ACTGG | 7 cut(s) | 1187, 1412, 2458, 2803, 3107, 3389, 3574 |
| BssNAI | GTATAC | 1 cut(s) | 1508 |
| BssNI | GRCGYC | 1 cut(s) | 162 |
| BssSI | CACGAG | 2 cut(s) | 432, 477 |
| BssT1I | CCWWGG | 4 cut(s) | 985, 2264, 3323, 3634 |
| Bst1107I | GTATAC | 1 cut(s) | 1508 |
| Bst2BI | CACGAG | 2 cut(s) | 432, 477 |
| Bst2UI | CCWGG | 6 cut(s) | 214, 981, 2691, 2847, 2856, 3092 |
| Bst6I | CTCTTC | 2 cut(s) | 120, 2079 |
| BstACI | GRCGYC | 1 cut(s) | 162 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1784, 3220 |
| BstAUI | TGTACA | 1 cut(s) | 1997 |
| BstBAI | YACGTR | 3 cut(s) | 557, 1251, 1871 |
| BstDSI | CCRYGG | 2 cut(s) | 2264, 3436 |
| BstEII | GGTNACC | 1 cut(s) | 459 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 534 |
| BstF5I | GGATG | 8 cut(s) | 1382, 1400, 1990, 2894, 3057, 3097, 3194, 3343 |
| BstH2I | RGCGCY | 1 cut(s) | 867 |
| BstHHI | GCGC | 2 cut(s) | 866, 3459 |
| BstMAI | GTCTC | 2 cut(s) | 801, 3665 |
| BstNI | CCWGG | 6 cut(s) | 214, 981, 2691, 2847, 2856, 3092 |
| BstNSI | RCATGY | 6 cut(s) | 926, 1339, 1506, 2185, 2209, 2833 |
| BstPI | GGTNACC | 1 cut(s) | 459 |
| BstSCI | CCNGG | 7 cut(s) | 212, 979, 2689, 2845, 2854, 3090, 3224 |
| BstSFI | CTRYAG | 4 cut(s) | 822, 1224, 1269, 2955 |
| BstSLI | GKGCMC | 1 cut(s) | 2619 |
| BstV2I | GAAGAC | 4 cut(s) | 165, 181, 1580, 3572 |
| BstX2I | RGATCY | 3 cut(s) | 1256, 1772, 3067 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 357, 1059 |
| BstYI | RGATCY | 3 cut(s) | 1256, 1772, 3067 |
| BstZ17I | GTATAC | 1 cut(s) | 1508 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1218 |
| BsuI | GTATCC | 1 cut(s) | 3017 |
| BtgI | CCRYGG | 2 cut(s) | 2264, 3436 |
| BtsCI | GGATG | 8 cut(s) | 1382, 1400, 1990, 2894, 3057, 3097, 3194, 3343 |
| BtsIMutI | CAGTG | 5 cut(s) | 1165, 2044, 2451, 2647, 3660 |
| BveI | ACCTGC | 6 cut(s) | 920, 1055, 1638, 2707, 2962, 2989 |
| CaiI | CAGNNNCTG | 3 cut(s) | 779, 1823, 3690 |
| CciI | TCATGA | 1 cut(s) | 3382 |
| CfoI | GCGC | 2 cut(s) | 866, 3459 |
| CseI | GACGC | 2 cut(s) | 170, 229 |
| CsiI | ACCWGGT | 1 cut(s) | 3090 |
| DraI | TTTAAA | 2 cut(s) | 1528, 1860 |
| DraIII | CACNNNGTG | 2 cut(s) | 1251, 2006 |
| EaeI | YGGCCR | 3 cut(s) | 737, 2427, 3446 |
| Eam1104I | CTCTTC | 2 cut(s) | 120, 2079 |
| EarI | CTCTTC | 2 cut(s) | 120, 2079 |
| EciI | GGCGGA | 1 cut(s) | 172 |
| Eco130I | CCWWGG | 4 cut(s) | 985, 2264, 3323, 3634 |
| Eco24I | GRGCYC | 6 cut(s) | 33, 132, 204, 1217, 2854, 3436 |
| Eco31I | GGTCTC | 1 cut(s) | 801 |
| Eco47I | GGWCC | 9 cut(s) | 216, 1033, 1361, 1730, 1846, 2105, 2531, 2645, 2978 |
| Eco57I | CTGAAG | 2 cut(s) | 2325, 3603 |
| Eco72I | CACGTG | 1 cut(s) | 1251 |
| Eco81I | CCTNAGG | 1 cut(s) | 1218 |
| Eco88I | CYCGRG | 2 cut(s) | 1290, 2934 |
| Eco91I | GGTNACC | 1 cut(s) | 459 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 534 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1033, 1361, 2978 |
| EcoO65I | GGTNACC | 1 cut(s) | 459 |
| EcoRI | GAATTC | 2 cut(s) | 327, 724 |
| EcoRII | CCWGG | 6 cut(s) | 212, 979, 2689, 2845, 2854, 3090 |
| EcoT14I | CCWWGG | 4 cut(s) | 985, 2264, 3323, 3634 |
| EcoT22I | ATGCAT | 1 cut(s) | 924 |
| EcoT38I | GRGCYC | 6 cut(s) | 33, 132, 204, 1217, 2854, 3436 |
| ErhI | CCWWGG | 4 cut(s) | 985, 2264, 3323, 3634 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 655, 687, 842, 874 |
| FaqI | GGGAC | 4 cut(s) | 227, 867, 1019, 1341 |
| FauI | CCCGC | 3 cut(s) | 275, 1891, 3660 |
| FauNDI | CATATG | 2 cut(s) | 1207, 3210 |
| FblI | GTMKAC | 2 cut(s) | 12, 1507 |
| FokI | GGATG | 8 cut(s) | 1387, 1389, 1997, 2881, 3044, 3084, 3181, 3350 |
| FriOI | GRGCYC | 6 cut(s) | 33, 132, 204, 1217, 2854, 3436 |
| GlaI | GCGC | 2 cut(s) | 865, 3458 |
| GsaI | CCCAGC | 4 cut(s) | 36, 870, 1396, 3694 |
| GsuI | CTGGAG | 2 cut(s) | 1170, 3267 |
| HaeII | RGCGCY | 1 cut(s) | 867 |
| HapII | CCGG | 2 cut(s) | 2915, 3226 |
| HgaI | GACGC | 2 cut(s) | 170, 229 |
| HhaI | GCGC | 2 cut(s) | 866, 3459 |
| Hin1I | GRCGYC | 1 cut(s) | 162 |
| Hin6I | GCGC | 2 cut(s) | 864, 3457 |
| HinP1I | GCGC | 2 cut(s) | 864, 3457 |
| HincII | GTYRAC | 3 cut(s) | 13, 687, 1750 |
| HindII | GTYRAC | 3 cut(s) | 13, 687, 1750 |
| HindIII | AAGCTT | 1 cut(s) | 2565 |
| HpaII | CCGG | 2 cut(s) | 2915, 3226 |
| HphI | GGTGA | 6 cut(s) | 453, 627, 1526, 1694, 2291, 3052 |
| Hpy99I | CGWCG | 4 cut(s) | 17, 29, 143, 146 |
| HpyCH4IV | ACGT | 7 cut(s) | 556, 1250, 1767, 1870, 1922, 1930, 2352 |
| HpySE526I | ACGT | 7 cut(s) | 556, 1250, 1767, 1870, 1922, 1930, 2352 |
| Hsp92I | GRCGYC | 1 cut(s) | 162 |
| HspAI | GCGC | 2 cut(s) | 864, 3457 |
| KflI | GGGWCCC | 1 cut(s) | 1033 |
| LguI | GCTCTTC | 1 cut(s) | 120 |
| LmnI | GCTCC | 4 cut(s) | 231, 1792, 2857, 3431 |
| MabI | ACCWGGT | 1 cut(s) | 3090 |
| MaeII | ACGT | 7 cut(s) | 556, 1250, 1767, 1870, 1922, 1930, 2352 |
| MbiI | CCGCTC | 1 cut(s) | 3667 |
| MfeI | CAATTG | 5 cut(s) | 48, 939, 1057, 1779, 1935 |
| MflI | RGATCY | 3 cut(s) | 1256, 1772, 3067 |
| MhlI | GDGCHC | 7 cut(s) | 33, 132, 204, 1217, 2619, 2854, 3436 |
| MlsI | TGGCCA | 2 cut(s) | 739, 2429 |
| MluNI | TGGCCA | 2 cut(s) | 739, 2429 |
| MlyI | GAGTC | 6 cut(s) | 13, 517, 849, 1617, 1966, 2932 |
| MmeI | TCCRAC | 3 cut(s) | 1310, 1750, 1948 |
| Mox20I | TGGCCA | 2 cut(s) | 739, 2429 |
| Mph1103I | ATGCAT | 1 cut(s) | 924 |
| MroXI | GAANNNNTTC | 1 cut(s) | 702 |
| MscI | TGGCCA | 2 cut(s) | 739, 2429 |
| MseI | TTAA | 6 cut(s) | 417, 1527, 1764, 1859, 3491, 3758 |
| MslI | CAYNNNNRTG | 7 cut(s) | 832, 1680, 1921, 2558, 3062, 3137, 3500 |
| Msp20I | TGGCCA | 2 cut(s) | 739, 2429 |
| MspA1I | CMGCKG | 5 cut(s) | 570, 1544, 1886, 3287, 3690 |
| MspI | CCGG | 2 cut(s) | 2915, 3226 |
| MspR9I | CCNGG | 7 cut(s) | 214, 981, 2691, 2847, 2856, 3092, 3226 |
| MunI | CAATTG | 5 cut(s) | 48, 939, 1057, 1779, 1935 |
| Mva1269I | GAATGC | 1 cut(s) | 298 |
| MvaI | CCWGG | 6 cut(s) | 214, 981, 2691, 2847, 2856, 3092 |
| NciI | CCSGG | 1 cut(s) | 3226 |
| NcoI | CCATGG | 1 cut(s) | 2264 |
| NdeI | CATATG | 2 cut(s) | 1207, 3210 |
| NheI | GCTAGC | 1 cut(s) | 563 |
| NlaIV | GGNNCC | 7 cut(s) | 1034, 1035, 1362, 1467, 2581, 2853, 3433 |
| NmeAIII | GCCGAG | 2 cut(s) | 3180, 3474 |
| NmuCI | GTSAC | 4 cut(s) | 459, 633, 973, 1532 |
| NsiI | ATGCAT | 1 cut(s) | 924 |
| NspI | RCATGY | 6 cut(s) | 926, 1339, 1506, 2185, 2209, 2833 |
| OliI | CACNNNNGTG | 2 cut(s) | 832, 3500 |
| PagI | TCATGA | 1 cut(s) | 3382 |
| PaqCI | CACCTGC | 2 cut(s) | 920, 2707 |
| PciI | ACATGT | 2 cut(s) | 1335, 1502 |
| PciSI | GCTCTTC | 1 cut(s) | 120 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 21, 168, 2398 |
| PctI | GAATGC | 1 cut(s) | 298 |
| PdmI | GAANNNNTTC | 1 cut(s) | 702 |
| PflFI | GACNNNGTC | 1 cut(s) | 3389 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1251, 3799 |
| PfoI | TCCNGGA | 1 cut(s) | 2689 |
| PleI | GAGTC | 6 cut(s) | 12, 517, 849, 1616, 1965, 2931 |
| PmaCI | CACGTG | 1 cut(s) | 1251 |
| PmlI | CACGTG | 1 cut(s) | 1251 |
| PpsI | GAGTC | 6 cut(s) | 12, 517, 849, 1616, 1965, 2931 |
| Ppu21I | YACGTR | 3 cut(s) | 557, 1251, 1871 |
| PpuMI | RGGWCCY | 3 cut(s) | 1033, 1361, 2978 |
| PscI | ACATGT | 2 cut(s) | 1335, 1502 |
| Psp1406I | AACGTT | 1 cut(s) | 1767 |
| Psp5II | RGGWCCY | 3 cut(s) | 1033, 1361, 2978 |
| Psp6I | CCWGG | 6 cut(s) | 212, 979, 2689, 2845, 2854, 3090 |
| PspCI | CACGTG | 1 cut(s) | 1251 |
| PspEI | GGTNACC | 1 cut(s) | 459 |
| PspFI | CCCAGC | 4 cut(s) | 32, 866, 1392, 3690 |
| PspGI | CCWGG | 6 cut(s) | 212, 979, 2689, 2845, 2854, 3090 |
| PspN4I | GGNNCC | 7 cut(s) | 1034, 1035, 1362, 1467, 2581, 2853, 3433 |
| PspPPI | RGGWCCY | 3 cut(s) | 1033, 1361, 2978 |
| PstI | CTGCAG | 4 cut(s) | 826, 1228, 1273, 2959 |
| PstNI | CAGNNNCTG | 3 cut(s) | 779, 1823, 3690 |
| PsuI | RGATCY | 3 cut(s) | 1256, 1772, 3067 |
| PsyI | GACNNNGTC | 1 cut(s) | 3389 |
| PvuII | CAGCTG | 3 cut(s) | 570, 1544, 3287 |
| RseI | CAYNNNNRTG | 7 cut(s) | 832, 1680, 1921, 2558, 3062, 3137, 3500 |
| SalI | GTCGAC | 1 cut(s) | 11 |
| SapI | GCTCTTC | 1 cut(s) | 120 |
| SaqAI | TTAA | 6 cut(s) | 417, 1527, 1764, 1859, 3491, 3758 |
| ScaI | AGTACT | 1 cut(s) | 820 |
| SchI | GAGTC | 6 cut(s) | 13, 517, 849, 1617, 1966, 2932 |
| ScrFI | CCNGG | 7 cut(s) | 214, 981, 2691, 2847, 2856, 3092, 3226 |
| SduI | GDGCHC | 7 cut(s) | 33, 132, 204, 1217, 2619, 2854, 3436 |
| SexAI | ACCWGGT | 1 cut(s) | 3090 |
| SfcI | CTRYAG | 4 cut(s) | 822, 1224, 1269, 2955 |
| SinI | GGWCC | 9 cut(s) | 216, 1033, 1361, 1730, 1846, 2105, 2531, 2645, 2978 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 832, 1680, 1921, 2558, 3062, 3137, 3500 |
| SmlI | CTYRAG | 2 cut(s) | 203, 534 |
| SmoI | CTYRAG | 2 cut(s) | 203, 534 |
| SpeI | ACTAGT | 1 cut(s) | 3644 |
| SsiI | CCGC | 8 cut(s) | 183, 282, 1884, 2398, 2419, 3142, 3667, 3688 |
| SspI | AATATT | 2 cut(s) | 1431, 2341 |
| StyD4I | CCNGG | 7 cut(s) | 212, 979, 2689, 2845, 2854, 3090, 3224 |
| StyI | CCWWGG | 4 cut(s) | 985, 2264, 3323, 3634 |
| TaiI | ACGT | 7 cut(s) | 559, 1253, 1770, 1873, 1925, 1933, 2355 |
| TaqI | TCGA | 4 cut(s) | 12, 1657, 1802, 3393 |
| TatI | WGTACW | 4 cut(s) | 818, 1997, 3172, 3832 |
| TauI | GCSGC | 4 cut(s) | 2401, 2421, 3145, 3690 |
| Tru1I | TTAA | 6 cut(s) | 417, 1527, 1764, 1859, 3491, 3758 |
| Tru9I | TTAA | 6 cut(s) | 417, 1527, 1764, 1859, 3491, 3758 |
| TscAI | CASTG | 5 cut(s) | 1165, 2044, 2458, 2647, 3667 |
| TseFI | GTSAC | 4 cut(s) | 459, 633, 973, 1532 |
| Tsp45I | GTSAC | 4 cut(s) | 459, 633, 973, 1532 |
| TspGWI | ACGGA | 4 cut(s) | 160, 1393, 3319, 3553 |
| TspRI | CASTG | 5 cut(s) | 1165, 2044, 2458, 2647, 3667 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3389 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1251, 3799 |
| VpaK11BI | GGWCC | 9 cut(s) | 216, 1033, 1361, 1730, 1846, 2105, 2531, 2645, 2978 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 534 |
| XapI | RAATTY | 6 cut(s) | 327, 701, 724, 742, 1195, 3843 |
| XbaI | TCTAGA | 3 cut(s) | 2113, 2176, 3352 |
| XceI | RCATGY | 6 cut(s) | 926, 1339, 1506, 2185, 2209, 2833 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1766, 3291 |
| XmiI | GTMKAC | 2 cut(s) | 12, 1507 |
| XmnI | GAANNNNTTC | 1 cut(s) | 702 |
| ZrmI | AGTACT | 1 cut(s) | 820 |
| Zsp2I | ATGCAT | 1 cut(s) | 924 |