FvH4_3g04880

Stem-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017260
Physical Location & Seq
Reverse (-)
2819994 .. 2821649
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04880.t1

Sequence Viewer

Length: 768 bp
ATGCTTGCCATATTCAGCAAGGAAGTGGTGCAGCCACCGCAGGAGCTTAATAGCCCGGCCACGCCGTCGTCTAAGAAGCCGAAGCACCCTGAAGAAATCGTCAAGGATTTCATGTCATGCCATGACCCCGATAATGCTTTCTCTGTTTGCTTTGGAAACAAGTCCCTGATCGCTTATGTTCGTCCAGAAAATAACTTCTCCATGAATCAGAGGTTGTTCTGTTCGTTGGATGACATATACTGCGTGTTCTTGGGGAGCCTTAACAACCTCAGCAGCCTGATCAAGCAATATGGCCTTTCAAAGAGCACAAATGAGGCCATGTTTGTGGTGCAGGCCTACCGGACCCTCCGAGACCGGGGACCTTACCCGGCCGATCAGGTCATCAAGGATCTGGACGGCAGCTTTGGATTTGTGATCTATGATAGCAAGGCTGGAACTGTTTTTGCTTCATTGGATGCTTATGATGGAGTTAGCCTATATTGGGGGATTGCAGCAGATGGTTCGGTCGTGATTTCGGACAACTTGGGGGTCTTGAAGGAAAGCTGTTCCAAGTCATTTGCTCCATTCCCAACTGGGTGCATGTTCCACAGTGAGCAGGGACTCATGAGCTTTGAGCACCCAACCCAGAAGATGAAGGCAATGCCTAGGATTGATAGTGAGGGGGTCATGTGTGGTGCCAACTTCAAGGTTGATGTTCACTCAAAGGTTCAGAATATGCCTCGTGTTGGAAGTGAAGCCAACTGGGCTGCTTGGGGACAACATGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3700

Protein Analysis

256

Amino Acids

28.12

Weight (kDa)

5.86

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 230 7.3e-103 Aluminium induced protein
GATase_7 PF13537 76 - 174 4.2e-06 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04880
malus_domestica MD05G1315200.v1.1 MD10G1296500.v1.1
prunus_persica Prupe.4G044100_v2.0.a1
pyrus_communis pycom05g29280
rosa_chinensis RchiOBHm_Chr5g0008041
rosa_laevigata RLG00000031530
rosa_multiflora Rmu_sc0007348.1_g000001
rosa_rugosa Rorug04G0432900
rosa_samantha Rh5AG060900 Rh5BG057700 Rh5DG056900
rosa_wichuraiana Rw5G005970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 2 cut(s) 57, 369
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 355, 481, 725
AgsI TTSAA 3 cut(s) 300, 535, 685
AluBI AGCT 4 cut(s) 46, 402, 543, 609
AluI AGCT 4 cut(s) 46, 402, 543, 609
Alw21I GWGCWC 2 cut(s) 308, 618
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 1 cut(s) 396
AoxI GGCC 5 cut(s) 57, 292, 315, 333, 369
ApeKI GCWGC 5 cut(s) 31, 273, 399, 491, 746
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
AspA2I CCTAGG 1 cut(s) 644
AspS9I GGNCC 2 cut(s) 342, 359
AsuC2I CCSGG 3 cut(s) 56, 356, 368
AvaII GGWCC 2 cut(s) 342, 359
AvrII CCTAGG 1 cut(s) 644
BanI GGYRCC 1 cut(s) 674
BauI CACGAG 1 cut(s) 720
Bbv12I GWGCWC 2 cut(s) 308, 618
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 43, 285, 411, 503, 733
BccI CCATC 2 cut(s) 458, 491
BceAI ACGGC 2 cut(s) 49, 412
BcgI CGANNNNNNTGC 2 cut(s) 483, 517
BclI TGATCA 1 cut(s) 279
BcnI CCSGG 3 cut(s) 56, 356, 368
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 645, 766
BglI GCCNNNNNGGC 1 cut(s) 743
BisI GCNGC 5 cut(s) 32, 274, 400, 492, 747
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 5 cut(s) 33, 275, 401, 493, 748
Bme1390I CCNGG 3 cut(s) 56, 356, 368
Bme18I GGWCC 2 cut(s) 342, 359
BmgT120I GGNCC 2 cut(s) 342, 359
BmiI GGNNCC 4 cut(s) 257, 344, 360, 676
BmrFI CCNGG 3 cut(s) 56, 356, 368
BmrI ACTGGG 2 cut(s) 582, 751
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 2 cut(s) 582, 751
Bpu10I CCTNAGC 1 cut(s) 269
BpuMI CCSGG 3 cut(s) 56, 356, 368
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 355, 644
BsaWI WCCGGW 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 481, 725
Bse1I ACTGG 2 cut(s) 577, 746
Bse3DI GCAATG 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 355, 644
BseGI GGATG 2 cut(s) 235, 460
BseLI CCNNNNNNNGG 3 cut(s) 355, 481, 725
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 2 cut(s) 577, 746
BseX3I CGGCCG 1 cut(s) 369
BseXI GCAGC 5 cut(s) 43, 285, 411, 503, 733
BsgI GTGCAG 2 cut(s) 50, 350
Bsh1285I CGRYCG 2 cut(s) 372, 507
BshFI GGCC 5 cut(s) 59, 294, 317, 335, 371
BshNI GGYRCC 1 cut(s) 674
BsiEI CGRYCG 2 cut(s) 372, 507
BsiHKAI GWGCWC 2 cut(s) 308, 618
BsiSI CCGG 4 cut(s) 56, 340, 355, 368
BslFI GGGAC 3 cut(s) 148, 372, 612
BslI CCNNNNNNNGG 3 cut(s) 355, 481, 725
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 3 cut(s) 148, 372, 612
BsnI GGCC 5 cut(s) 59, 294, 317, 335, 371
Bso31I GGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 308, 618
Bsp143I GATC 5 cut(s) 168, 279, 373, 388, 414
BspACI CCGC 1 cut(s) 38
BspANI GGCC 5 cut(s) 59, 294, 317, 335, 371
BspCNI CTCAG 1 cut(s) 282
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 4 cut(s) 257, 344, 360, 676
BspPI GGATC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 2 cut(s) 577, 746
BssECI CCNNGG 2 cut(s) 355, 644
BssMI GATC 5 cut(s) 168, 279, 373, 388, 414
BssSI CACGAG 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 644
Bst2BI CACGAG 1 cut(s) 720
Bst4CI ACNGT 2 cut(s) 439, 590
BstC8I GCNNGC 2 cut(s) 6, 333
BstDEI CTNAG 2 cut(s) 72, 269
BstF5I GGATG 2 cut(s) 235, 460
BstKTI GATC 5 cut(s) 171, 282, 376, 391, 417
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 5 cut(s) 168, 279, 373, 388, 414
BstMCI CGRYCG 2 cut(s) 372, 507
BstMWI GCNNNNNNNGC 2 cut(s) 37, 743
BstNSI RCATGY 2 cut(s) 583, 764
BstSCI CCNGG 3 cut(s) 54, 354, 366
BstV1I GCAGC 5 cut(s) 43, 285, 411, 503, 733
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 388
BstZI CGGCCG 1 cut(s) 369
BsuRI GGCC 5 cut(s) 59, 294, 317, 335, 371
BtsCI GGATG 2 cut(s) 235, 460
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 6, 333
CciI TCATGA 1 cut(s) 603
Cfr13I GGNCC 2 cut(s) 342, 359
CviAII CATG 9 cut(s) 112, 117, 122, 202, 319, 580, 604, 667, 761
DdeI CTNAG 2 cut(s) 72, 269
DpnI GATC 5 cut(s) 170, 281, 375, 390, 416
DpnII GATC 5 cut(s) 168, 279, 373, 388, 414
EaeI YGGCCR 2 cut(s) 57, 369
EagI CGGCCG 1 cut(s) 369
EclXI CGGCCG 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 644
Eco147I AGGCCT 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 342, 359
Eco52I CGGCCG 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 644
FaeI CATG 9 cut(s) 115, 120, 125, 205, 322, 583, 607, 670, 764
FaqI GGGAC 3 cut(s) 148, 372, 612
FatI CATG 9 cut(s) 111, 116, 121, 201, 318, 579, 603, 666, 760
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 32, 274, 400, 492, 747
FokI GGATG 2 cut(s) 242, 467
Fsp4HI GCNGC 5 cut(s) 32, 274, 400, 492, 747
FspBI CTAG 2 cut(s) 645, 766
GluI GCNGC 5 cut(s) 32, 274, 400, 492, 747
HaeIII GGCC 5 cut(s) 59, 294, 317, 335, 371
HapII CCGG 4 cut(s) 56, 340, 355, 368
Hin1II CATG 9 cut(s) 115, 120, 125, 205, 322, 583, 607, 670, 764
HinfI GANTC 2 cut(s) 205, 600
HpaII CCGG 4 cut(s) 56, 340, 355, 368
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 4 cut(s) 210, 350, 517, 711
Hpy188III TCNNGA 5 cut(s) 185, 392, 508, 532, 604
Hpy8I GTNNAC 1 cut(s) 697
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 529, 628
HpyCH4III ACNGT 2 cut(s) 439, 590
HpyCH4V TGCA 4 cut(s) 31, 331, 491, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 743
HpyF3I CTNAG 2 cut(s) 72, 269
Hsp92II CATG 9 cut(s) 115, 120, 125, 205, 322, 583, 607, 670, 764
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 5 cut(s) 168, 279, 373, 388, 414
LmnI GCTCC 3 cut(s) 43, 255, 565
Lsp1109I GCAGC 5 cut(s) 43, 285, 411, 503, 733
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 645, 766
MalI GATC 5 cut(s) 170, 281, 375, 390, 416
MboI GATC 5 cut(s) 168, 279, 373, 388, 414
MboII GAAGA 2 cut(s) 104, 640
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 308, 618
MlyI GAGTC 1 cut(s) 594
MmeI TCCRAC 2 cut(s) 207, 706
MnlI CCTC 6 cut(s) 204, 278, 307, 356, 652, 729
MseI TTAA 2 cut(s) 48, 261
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 4 cut(s) 56, 340, 355, 368
MspR9I CCNGG 3 cut(s) 56, 356, 368
MwoI GCNNNNNNNGC 2 cut(s) 37, 743
NciI CCSGG 3 cut(s) 56, 356, 368
NdeII GATC 5 cut(s) 168, 279, 373, 388, 414
NlaIII CATG 9 cut(s) 115, 120, 125, 205, 322, 583, 607, 670, 764
NlaIV GGNNCC 4 cut(s) 257, 344, 360, 676
NspI RCATGY 2 cut(s) 583, 764
PagI TCATGA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 335
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 5 cut(s) 33, 275, 401, 493, 748
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
PpuMI RGGWCCY 1 cut(s) 359
Psp5II RGGWCCY 1 cut(s) 359
PspN4I GGNNCC 4 cut(s) 257, 344, 360, 676
PspPI GGNCC 2 cut(s) 342, 359
PspPPI RGGWCCY 1 cut(s) 359
PsuI RGATCY 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 48, 261
SatI GCNGC 5 cut(s) 32, 274, 400, 492, 747
Sau3AI GATC 5 cut(s) 168, 279, 373, 388, 414
Sau96I GGNCC 2 cut(s) 342, 359
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 3 cut(s) 56, 356, 368
SduI GDGCHC 2 cut(s) 308, 618
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 2 cut(s) 342, 359
SmiMI CAYNNNNRTG 1 cut(s) 323
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 1 cut(s) 38
SspMI CTAG 2 cut(s) 645, 766
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 54, 354, 366
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 2 cut(s) 439, 590
TaqII GACCGA 1 cut(s) 493
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 48, 261
Tru9I TTAA 2 cut(s) 48, 261
TscAI CASTG 1 cut(s) 595
TseI GCWGC 5 cut(s) 31, 273, 399, 491, 746
TspDTI ATGAA 4 cut(s) 100, 218, 438, 647
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 342, 359
XceI RCATGY 2 cut(s) 583, 764
XmaJI CCTAGG 1 cut(s) 644
XspI CTAG 2 cut(s) 645, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.