Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008127

Physical Location & Seq

Genomic Coordinates Forward (+)

59099537 .. 59105476

Gene Structure 5940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0432900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGTGACGCCGCGGAAGAAGAACCCTAAGGCGTCTCCGAAATCGAAGAAGACAACCGATCCGGAGCGAGCTTCACCGGAGGTACCTGTTTCTTCCACGGTCGTTGACGGCGGAGAGATGAATCCATCGGCGAGGAAGAACAAGTCCAATGCGCCTCCCGCCTCGGCTCCGGAACCTAAGAAGTCGAAGAGAACCAAACCGAAGGCAGGTCCTTGTTCCATTGTCGTCGACGGCCCGGAGCCTACGTTCGTCGGCGAACCGCTTACCGACGAGGAAGCTCGGCGGAGATGGCCAGAATCGTACCGAAAGGAGAAGCAAGTTGCTGGACCAATCAGCTCTAAGGGAGATGAAGATTCTCTTCAGGCTCGTTCTCACTTTACAATGGCTGAAGTGGATGGTATAAGATATGATCTGTATGATGATGCTCATGTTCTGGCTGGAGAAGGAGAGCCACCATACATTTGCAAGATAGTTGAGATGTTTGAGGCAGTAGATGGGCAGTTATATTTTACAGCTCAATGGTACTACCGAGTACAAAACACTGTCATCAAAGACTGTGTTGAGATTGATAGTAGACGTGTTTTCTTCTCAGATGTGAAGGACTGCAATCCTTTGGAATGTCTTCTTGAAAAGATTACTATTGTTAGATTGGCTCTAAATGTTGATCCTGATGTTAAGAACAAACTTATTCAAGAGTGCAAGTATTATTGTGACACCAAATACTTGTTGCCTCATTCAACTTTTGTCAATTTACTACCAGAACTTATGAAAAGCTCCATAGTCAGGGAGCAATGCTTACAAGAACTTAAATTGCTGGACTTATATGCTGGGTGTGGTGGGATGTCAACTGGCCTATGTTTGGGTGCTCGATTATCCAATGTAAATCTTGTCACGAGATGGGCTGTTGATATAAATGAATATGCGCTCAAAAGTCTAAAGCTTAATCATCCAGAAACTGAGGTTAGAAAGGAATATGCGGAAAACTTTCTGATTTTGCTGAAGAAGTGGAAGGGACTATGCATTTCTTTTAACTTGGTTGAGGGCGAGAATTCAGAGATACCGGTCAATTTCTTTGCAACAAATGACCCTTCAGATGAAGAAGAGGATGAGGACCAGAATAAGGATAATGCTGAAGATTCTGAGGTTTATGAAGTCGAAAAAATACTTGATATATGTTATGGGGAACCAGAAGAGAAAGATAGGGGGCTGTACTTCAAGGTTCATTGGAAGGGCTATGGTTCAGATGAAGATACTTGGGAGCCTATTGAGTCACTGAGGGATTGCAAGGATAGTGTACAAGAATTTGTTTCTCGTGGCTTCAGATCAAAAATGTTGCCGTTACCTGGAGATGTTGATGTGGTGTGTGGTGGACCTCCTTGCCAGGGAATAAGCGGATTCAACCGATTTAGGGACAAGGAAAATCCTTTGAATGATAAGAAAAATGAACAGGTGGTTGTTTTTATGGACATAGTTCAGTACCTTAAGCCTAAGTATGTCTTGATGGAAAACGTGGTCGACCTTTTGAAATTTGCGGAAGGATTCCTTGGGCGATATGCCATTGGACGTCTTGTTGATATGAACTATCAGGCAAGGATCGGTATGATGTGTGCAGGAGCATATGGTCTTCCTCAATTCCGTATGCGGGTTTTTCTATGGGGGGCCTGTCCTACTGAGCGGTTGCCACAATACCCGCTTCCTACCCATGATGTTGTTGTCAAGGGTCATACTCCAACTGAATGGGAGGAGAATGCAGTTTGTAGTGAAGGGCATCAATCTACATTGAAAGAAAAGCTCTTTTTGGAGGATGCTCTATCTGACCTTCCTGCTGTAAATAATAATGAGTGCCGTGATGAGATGCCATATGGAAGTCTCCCCCAGACTGAGTTCCAGAAGATGATTAGACTTACCAGAAACTATTTATTGGGATCTTCAAAGAGTGAGCCTTATAATGTGATGCTATATGATCACCAGCCTTTGACAGTGAATGCTGACGATTATGCTCGTATATGTCGCATTCCCAAAGAGAAGGGTGCGAATTTTAGAAACCTAACTGGTGTTCGAGTGCGTCCTGATAAAACAGTTGAATGGAATCCTGATGTAGACAGGGTTTATTTGGACTCTGGCGCTCCTCTGGTCCCTGACTATGCTATGTCATTTGTGAAAGGGAAATCATCAAAACCGTTCGGACGTTTGTGGTGGGACGAAATAGTGTCCACCGTTGTCACTCGGGCCGAGCCCCACAATCAGGCTATCTTGCATCCTGATCAAGACAGAGTGTTGACTATACGTGAAAATGCAAGATTGCAAGGCTTTCCTGATTATTACAAACTCTGCGGGCCAGTTAAAGAAAGATACATTCAAGTTGGGAATGCCGTAGCAGTTCCTGTTGCGCGTGCTCTGGGATATGCACTAGGGCGTGCTCTCAGTGGTTTAGTTGATCATCGTTCTATGTTTGAGTTGCCTGATGGGTTCCCTAATCATCTGGAAGAGATTCCTTCTCCAGAAGTTAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

838

Amino Acids

95.0

Weight (kDa)

5.33

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAH	PF01426	148 - 241	1.4e-10	BAH domain
Chromo	PF00385	383 - 438	1.2e-13	Chromo (CHRromatin Organisation MOdifier) domain
DNA_methylase	PF00145	447 - 804	1.3e-32	C-5 cytosine-specific DNA methylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008127)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890
malus_domestica	MD05G1315100.v1.1 MD10G1296400.v1.1
prunus_persica	Prupe.4G044200_v2.0.a1 Prupe.4G044200_v2.0.a1
pyrus_communis	pycom05g29270 pycom10g24900
rosa_chinensis	RchiOBHm_Chr5g0008051
rosa_laevigata	RLG00000031531
rosa_multiflora	Rmu_sc0017465.1_g000001 Rmu_sc0026680.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068430
rosa_rugosa	Rorug04G0432900 Rorug04G0433000
rosa_samantha	Rh5AG061000 Rh5BG057800 Rh5CG067900 Rh5DG057000
rosa_wichuraiana	Rw5G005960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1947
AatII	GACGTC	1 cut(s)	1567
Acc36I	ACCTGC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	82
AccBSI	CCGCTC	1 cut(s)	1675
AccI	GTMKAC	4 cut(s)	228, 574, 1515, 2100
AccII	CGCG	2 cut(s)	13, 2392
AccIII	TCCGGA	2 cut(s)	61, 169
AclWI	GGATC	4 cut(s)	53, 659, 1601, 1933
AcoI	YGGCCR	1 cut(s)	290
AcsI	RAATTY	4 cut(s)	1048, 1301, 1526, 2035
AcuI	CTGAAG	6 cut(s)	344, 408, 1019, 1074, 1152, 1303
AcyI	GRCGYC	3 cut(s)	8, 32, 1564
AfaI	GTAC	7 cut(s)	84, 302, 524, 534, 1211, 1296, 1478
AfiI	CCNNNNNNNGG	9 cut(s)	206, 783, 859, 1120, 1343, 1382, 1408, 1642, 2245
AflII	CTTAAG	1 cut(s)	1481
AflIII	ACRYGT	1 cut(s)	577
AgeI	ACCGGT	1 cut(s)	1060
AjiI	CACGTC	1 cut(s)	578
AjnI	CCWGG	2 cut(s)	1342, 1380
AjuI	GAANNNNNNNTTGG	2 cut(s)	1527, 1559
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	7 cut(s)	71, 278, 336, 515, 774, 940, 1792
AluI	AGCT	7 cut(s)	71, 278, 336, 515, 774, 940, 1792
Alw21I	GWGCWC	3 cut(s)	868, 2398, 2422
Alw26I	GTCTC	2 cut(s)	39, 1874
AlwI	GGATC	4 cut(s)	53, 659, 1601, 1933
AlwNI	CAGNNNCTG	2 cut(s)	956, 2384
Ama87I	CYCGRG	1 cut(s)	2226
Aor13HI	TCCGGA	2 cut(s)	61, 169
AoxI	GGCC	6 cut(s)	232, 290, 850, 1659, 2229, 2336
ApoI	RAATTY	4 cut(s)	1048, 1301, 1526, 2035
AsiGI	ACCGGT	1 cut(s)	1060
Asp700I	GAANNNNTTC	3 cut(s)	621, 984, 2490
Asp718I	GGTACC	1 cut(s)	82
AspLEI	GCGC	4 cut(s)	154, 925, 2126, 2392
AspS9I	GGNCC	9 cut(s)	209, 233, 326, 1111, 1370, 1659, 2134, 2229, 2336
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	16, 66, 1958
AvaI	CYCGRG	1 cut(s)	2226
AvaII	GGWCC	5 cut(s)	209, 326, 1111, 1370, 2134
AxyI	CCTNAGG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	2238
BauI	CACGAG	2 cut(s)	892, 1311
BbsI	GAAGAC	3 cut(s)	56, 614, 1616
Bbv12I	GWGCWC	3 cut(s)	868, 2398, 2422
BccI	CCATC	7 cut(s)	133, 282, 389, 488, 891, 1495, 2459
BceAI	ACGGC	5 cut(s)	124, 247, 1321, 1830, 2357
BciT130I	CCWGG	2 cut(s)	1344, 1382
BclI	TGATCA	3 cut(s)	1963, 2263, 2437
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	39, 1874
BfaI	CTAG	1 cut(s)	2411
BfoI	RGCGCY	1 cut(s)	2127
BfrI	CTTAAG	1 cut(s)	1481
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	236, 1344, 1382
Bme18I	GGWCC	5 cut(s)	209, 326, 1111, 1370, 2134
BmeT110I	CYCGRG	1 cut(s)	2226
BmgBI	CACGTC	1 cut(s)	578
BmgT120I	GGNCC	9 cut(s)	209, 233, 326, 1111, 1370, 1659, 2134, 2229, 2336
BmiI	GGNNCC	9 cut(s)	84, 168, 174, 240, 1185, 1260, 1660, 2136, 2471
BmrFI	CCNGG	3 cut(s)	236, 1344, 1382
BmsI	GCATC	6 cut(s)	412, 1777, 1795, 1845, 1944, 2266
BpiI	GAAGAC	3 cut(s)	56, 614, 1616
BpmI	CTGGAG	3 cut(s)	459, 1365, 2484
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	2288
BsaHI	GRCGYC	3 cut(s)	8, 32, 1564
BsaJI	CCNNGG	5 cut(s)	11, 96, 162, 1381, 1543
BsaWI	WCCGGW	4 cut(s)	61, 76, 169, 1060
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	9 cut(s)	206, 783, 859, 1120, 1343, 1382, 1408, 1642, 2245
Bse118I	RCCGGY	1 cut(s)	1060
Bse1I	ACTGG	3 cut(s)	853, 2056, 2339
Bse21I	CCTNAGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	797
BseAI	TCCGGA	2 cut(s)	61, 169
BseBI	CCWGG	2 cut(s)	1344, 1382
BseDI	CCNNGG	5 cut(s)	11, 96, 162, 1381, 1543
BseGI	GGATG	6 cut(s)	400, 846, 946, 1111, 1810, 2257
BseLI	CCNNNNNNNGG	9 cut(s)	206, 783, 859, 1120, 1343, 1382, 1408, 1642, 2245
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	7 cut(s)	603, 948, 1131, 1265, 1662, 1872, 2437
BseNI	ACTGG	3 cut(s)	853, 2056, 2339
BseRI	GAGGAG	2 cut(s)	1757, 2118
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	1 cut(s)	1629
Bsh1236I	CGCG	2 cut(s)	13, 2392
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	6 cut(s)	234, 292, 852, 1661, 2231, 2338
BshNI	GGYRCC	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	1060
BsiEI	CGRYCG	1 cut(s)	102
BsiHKAI	GWGCWC	3 cut(s)	868, 2398, 2422
BsiHKCI	CYCGRG	1 cut(s)	2226
BsiSI	CCGG	5 cut(s)	62, 77, 170, 236, 1061
BslFI	GGGAC	4 cut(s)	1026, 1424, 2120, 2213
BslI	CCNNNNNNNGG	9 cut(s)	206, 783, 859, 1120, 1343, 1382, 1408, 1642, 2245
BsmAI	GTCTC	2 cut(s)	39, 1874
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	4 cut(s)	1026, 1424, 2120, 2213
BsmI	GAATGC	4 cut(s)	1753, 1990, 2013, 2374
BsnI	GGCC	6 cut(s)	234, 292, 852, 1661, 2231, 2338
BsoBI	CYCGRG	1 cut(s)	2226
Bsp1286I	GDGCHC	4 cut(s)	868, 2238, 2398, 2422
Bsp13I	TCCGGA	2 cut(s)	61, 169
Bsp1407I	TGTACA	1 cut(s)	1294
Bsp143I	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
BspANI	GGCC	6 cut(s)	234, 292, 852, 1661, 2231, 2338
BspCNI	CTCAG	7 cut(s)	602, 949, 1132, 1266, 1663, 1873, 2436
BspEI	TCCGGA	2 cut(s)	61, 169
BspFNI	CGCG	2 cut(s)	13, 2392
BspLI	GGNNCC	9 cut(s)	84, 168, 174, 240, 1185, 1260, 1660, 2136, 2471
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	4 cut(s)	53, 659, 1601, 1933
BspT107I	GGYRCC	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	1481
BsrBI	CCGCTC	1 cut(s)	1675
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	1060
BsrGI	TGTACA	1 cut(s)	1294
BsrI	ACTGG	3 cut(s)	853, 2056, 2339
BssAI	RCCGGY	1 cut(s)	1060
BssECI	CCNNGG	5 cut(s)	11, 96, 162, 1381, 1543
BssMI	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
BssNI	GRCGYC	3 cut(s)	8, 32, 1564
BssSI	CACGAG	2 cut(s)	892, 1311
BssT1I	CCWWGG	1 cut(s)	1543
Bst2BI	CACGAG	2 cut(s)	892, 1311
Bst2UI	CCWGG	2 cut(s)	1344, 1382
Bst4CI	ACNGT	7 cut(s)	100, 544, 557, 1981, 2080, 2181, 2218
Bst6I	CTCTTC	5 cut(s)	182, 363, 1095, 1185, 2481
BstACI	GRCGYC	3 cut(s)	8, 32, 1564
BstAFI	CTTAAG	1 cut(s)	1481
BstAUI	TGTACA	1 cut(s)	1294
BstBAI	YACGTR	1 cut(s)	2288
BstC8I	GCNNGC	4 cut(s)	69, 2336, 2394, 2418
BstDSI	CCRYGG	2 cut(s)	11, 96
BstF5I	GGATG	6 cut(s)	400, 846, 946, 1111, 1810, 2257
BstFNI	CGCG	2 cut(s)	13, 2392
BstH2I	RGCGCY	1 cut(s)	2127
BstHHI	GCGC	4 cut(s)	154, 925, 2126, 2392
BstKTI	GATC	9 cut(s)	61, 412, 667, 1325, 1596, 1928, 1966, 2266, 2440
BstMAI	GTCTC	2 cut(s)	39, 1874
BstMBI	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 289
BstNI	CCWGG	2 cut(s)	1344, 1382
BstSCI	CCNGG	3 cut(s)	234, 1342, 1380
BstUI	CGCG	2 cut(s)	13, 2392
BstV2I	GAAGAC	3 cut(s)	56, 614, 1616
BstX2I	RGATCY	1 cut(s)	1925
BstXI	CCANNNNNNTGG	1 cut(s)	1737
BstYI	RGATCY	1 cut(s)	1925
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	6 cut(s)	234, 292, 852, 1661, 2231, 2338
BtgI	CCRYGG	2 cut(s)	11, 96
BtrI	CACGTC	1 cut(s)	578
BtsCI	GGATG	6 cut(s)	400, 846, 946, 1111, 1810, 2257
BtsIMutI	CAGTG	4 cut(s)	540, 1271, 1986, 2431
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	4 cut(s)	69, 2336, 2394, 2418
CaiI	CAGNNNCTG	2 cut(s)	956, 2384
CfoI	GCGC	4 cut(s)	154, 925, 2126, 2392
Cfr10I	RCCGGY	1 cut(s)	1060
Cfr13I	GGNCC	9 cut(s)	209, 233, 326, 1111, 1370, 1659, 2134, 2229, 2336
Cfr42I	CCGCGG	1 cut(s)	14
CseI	GACGC	3 cut(s)	16, 21, 2054
Csp6I	GTAC	7 cut(s)	83, 301, 523, 533, 1210, 1295, 1477
CspAI	ACCGGT	1 cut(s)	1060
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	2 cut(s)	428, 1703
CviQI	GTAC	7 cut(s)	83, 301, 523, 533, 1210, 1295, 1477
DpnI	GATC	9 cut(s)	60, 411, 666, 1324, 1595, 1927, 1965, 2265, 2439
DpnII	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
EaeI	YGGCCR	1 cut(s)	290
Eam1104I	CTCTTC	5 cut(s)	182, 363, 1095, 1185, 2481
EarI	CTCTTC	5 cut(s)	182, 363, 1095, 1185, 2481
EciI	GGCGGA	2 cut(s)	126, 298
Eco130I	CCWWGG	1 cut(s)	1543
Eco24I	GRGCYC	1 cut(s)	2238
Eco47I	GGWCC	5 cut(s)	209, 326, 1111, 1370, 2134
Eco57I	CTGAAG	6 cut(s)	344, 408, 1019, 1074, 1152, 1303
Eco81I	CCTNAGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	2226
EcoO109I	RGGNCCY	2 cut(s)	209, 1659
EcoRI	GAATTC	1 cut(s)	1048
EcoRII	CCWGG	2 cut(s)	1342, 1380
EcoT14I	CCWWGG	1 cut(s)	1543
EcoT22I	ATGCAT	1 cut(s)	1022
EcoT38I	GRGCYC	1 cut(s)	2238
ErhI	CCWWGG	1 cut(s)	1543
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	431, 1706
FalI	AAGNNNNNCTT	6 cut(s)	342, 374, 1481, 1513, 1527, 1559
FaqI	GGGAC	4 cut(s)	1026, 1424, 2120, 2213
FatI	CATG	2 cut(s)	427, 1702
FauI	CCCGC	4 cut(s)	166, 1635, 1698, 2327
FauNDI	CATATG	2 cut(s)	1618, 1861
FbaI	TGATCA	3 cut(s)	1963, 2263, 2437
FblI	GTMKAC	4 cut(s)	228, 574, 1515, 2100
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	6 cut(s)	407, 853, 933, 1118, 1817, 2244
FriOI	GRGCYC	1 cut(s)	2238
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	2411
GlaI	GCGC	4 cut(s)	153, 924, 2125, 2391
GluI	GCNGC	1 cut(s)	11
GsaI	CCCAGC	1 cut(s)	831
GsuI	CTGGAG	3 cut(s)	459, 1365, 2484
HaeII	RGCGCY	1 cut(s)	2127
HaeIII	GGCC	6 cut(s)	234, 292, 852, 1661, 2231, 2338
HapII	CCGG	5 cut(s)	62, 77, 170, 236, 1061
HgaI	GACGC	3 cut(s)	16, 21, 2054
HhaI	GCGC	4 cut(s)	154, 925, 2126, 2392
Hin1I	GRCGYC	3 cut(s)	8, 32, 1564
Hin1II	CATG	2 cut(s)	431, 1706
Hin6I	GCGC	4 cut(s)	152, 923, 2124, 2390
HinP1I	GCGC	4 cut(s)	152, 923, 2124, 2390
HincII	GTYRAC	5 cut(s)	106, 229, 846, 1516, 2280
HindII	GTYRAC	5 cut(s)	106, 229, 846, 1516, 2280
HindIII	AAGCTT	1 cut(s)	938
HpaII	CCGG	5 cut(s)	62, 77, 170, 236, 1061
HphI	GGTGA	3 cut(s)	16, 66, 1958
Hpy99I	CGWCG	4 cut(s)	230, 233, 254, 272
HpyCH4III	ACNGT	7 cut(s)	100, 544, 557, 1981, 2080, 2181, 2218
HpyCH4IV	ACGT	6 cut(s)	245, 577, 1509, 1564, 2188, 2287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 289
HpySE526I	ACGT	6 cut(s)	245, 577, 1509, 1564, 2188, 2287
Hsp92I	GRCGYC	3 cut(s)	8, 32, 1564
Hsp92II	CATG	2 cut(s)	431, 1706
HspAI	GCGC	4 cut(s)	152, 923, 2124, 2390
Kpn2I	TCCGGA	2 cut(s)	61, 169
KpnI	GGTACC	1 cut(s)	86
Ksp22I	TGATCA	3 cut(s)	1963, 2263, 2437
KspI	CCGCGG	1 cut(s)	14
Kzo9I	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
LmnI	GCTCC	8 cut(s)	64, 172, 238, 779, 787, 1258, 1613, 2131
LweI	GCATC	6 cut(s)	412, 1777, 1795, 1845, 1944, 2266
MaeI	CTAG	1 cut(s)	2411
MaeII	ACGT	6 cut(s)	245, 577, 1509, 1564, 2188, 2287
MaeIII	GTNAC	6 cut(s)	4, 710, 889, 1269, 1338, 2221
MalI	GATC	9 cut(s)	60, 411, 666, 1324, 1595, 1927, 1965, 2265, 2439
MbiI	CCGCTC	1 cut(s)	1675
MboI	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
MflI	RGATCY	1 cut(s)	1925
MhlI	GDGCHC	4 cut(s)	868, 2238, 2398, 2422
MlsI	TGGCCA	1 cut(s)	292
MluCI	AATT	8 cut(s)	748, 809, 1048, 1066, 1301, 1526, 1631, 2035
MluNI	TGGCCA	1 cut(s)	292
MlyI	GAGTC	2 cut(s)	1277, 2111
MmeI	TCCRAC	1 cut(s)	1754
Mox20I	TGGCCA	1 cut(s)	292
Mph1103I	ATGCAT	1 cut(s)	1022
MroI	TCCGGA	2 cut(s)	61, 169
MroXI	GAANNNNTTC	3 cut(s)	621, 984, 2490
MscI	TGGCCA	1 cut(s)	292
MseI	TTAA	6 cut(s)	675, 807, 942, 1029, 1482, 2343
Msp20I	TGGCCA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	13
MspCI	CTTAAG	1 cut(s)	1481
MspI	CCGG	5 cut(s)	62, 77, 170, 236, 1061
MspR9I	CCNGG	3 cut(s)	236, 1344, 1382
Mva1269I	GAATGC	4 cut(s)	1753, 1990, 2013, 2374
MvaI	CCWGG	2 cut(s)	1344, 1382
MvnI	CGCG	2 cut(s)	13, 2392
MwoI	GCNNNNNNNGC	2 cut(s)	158, 289
NciI	CCSGG	1 cut(s)	236
NdeI	CATATG	2 cut(s)	1618, 1861
NdeII	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
NlaIII	CATG	2 cut(s)	431, 1706
NlaIV	GGNNCC	9 cut(s)	84, 168, 174, 240, 1185, 1260, 1660, 2136, 2471
NmeAIII	GCCGAG	3 cut(s)	143, 259, 2257
NmuCI	GTSAC	5 cut(s)	4, 710, 889, 1269, 2221
NsiI	ATGCAT	1 cut(s)	1022
PctI	GAATGC	4 cut(s)	1753, 1990, 2013, 2374
PdmI	GAANNNNTTC	3 cut(s)	621, 984, 2490
PfeI	GAWTC	8 cut(s)	121, 296, 353, 1136, 1395, 1539, 2089, 2491
PinAI	ACCGGT	1 cut(s)	1060
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	1276, 2111
PpsI	GAGTC	2 cut(s)	1276, 2111
Ppu21I	YACGTR	1 cut(s)	2288
PpuMI	RGGWCCY	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	1947
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	1342, 1380
PspFI	CCCAGC	1 cut(s)	827
PspGI	CCWGG	2 cut(s)	1342, 1380
PspN4I	GGNNCC	9 cut(s)	84, 168, 174, 240, 1185, 1260, 1660, 2136, 2471
PspPI	GGNCC	9 cut(s)	209, 233, 326, 1111, 1370, 1659, 2134, 2229, 2336
PspPPI	RGGWCCY	1 cut(s)	209
PstNI	CAGNNNCTG	2 cut(s)	956, 2384
PsuI	RGATCY	1 cut(s)	1925
RsaI	GTAC	7 cut(s)	84, 302, 524, 534, 1211, 1296, 1478
RsaNI	GTAC	7 cut(s)	83, 301, 523, 533, 1210, 1295, 1477
SacII	CCGCGG	1 cut(s)	14
SalI	GTCGAC	2 cut(s)	227, 1514
SaqAI	TTAA	6 cut(s)	675, 807, 942, 1029, 1482, 2343
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	9 cut(s)	58, 409, 664, 1322, 1593, 1925, 1963, 2263, 2437
Sau96I	GGNCC	9 cut(s)	209, 233, 326, 1111, 1370, 1659, 2134, 2229, 2336
SchI	GAGTC	2 cut(s)	1277, 2111
ScrFI	CCNGG	3 cut(s)	236, 1344, 1382
SduI	GDGCHC	4 cut(s)	868, 2238, 2398, 2422
SfaNI	GCATC	6 cut(s)	412, 1777, 1795, 1845, 1944, 2266
Sfr303I	CCGCGG	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	14
SgrDI	CGTCGACG	1 cut(s)	227
SinI	GGWCC	5 cut(s)	209, 326, 1111, 1370, 2134
SmlI	CTYRAG	1 cut(s)	1481
SmoI	CTYRAG	1 cut(s)	1481
Sse9I	AATT	8 cut(s)	748, 809, 1048, 1066, 1301, 1526, 1631, 2035
SspMI	CTAG	1 cut(s)	2411
StyD4I	CCNGG	3 cut(s)	234, 1342, 1380
StyI	CCWWGG	1 cut(s)	1543
TaaI	ACNGT	7 cut(s)	100, 544, 557, 1981, 2080, 2181, 2218
TaiI	ACGT	6 cut(s)	248, 580, 1512, 1567, 2191, 2290
TaqI	TCGA	7 cut(s)	44, 185, 228, 868, 1155, 1515, 2059
TasI	AATT	8 cut(s)	748, 809, 1048, 1066, 1301, 1526, 1631, 2035
TatI	WGTACW	3 cut(s)	532, 1209, 1294
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	8 cut(s)	121, 296, 353, 1136, 1395, 1539, 2089, 2491
Tru1I	TTAA	6 cut(s)	675, 807, 942, 1029, 1482, 2343
Tru9I	TTAA	6 cut(s)	675, 807, 942, 1029, 1482, 2343
TscAI	CASTG	4 cut(s)	547, 1278, 1986, 2431
TseFI	GTSAC	5 cut(s)	4, 710, 889, 1269, 2221
Tsp45I	GTSAC	5 cut(s)	4, 710, 889, 1269, 2221
TspGWI	ACGGA	1 cut(s)	1625
TspRI	CASTG	4 cut(s)	547, 1278, 1986, 2431
Vha464I	CTTAAG	1 cut(s)	1481
VpaK11BI	GGWCC	5 cut(s)	209, 326, 1111, 1370, 2134
XapI	RAATTY	4 cut(s)	1048, 1301, 1526, 2035
XmiI	GTMKAC	4 cut(s)	228, 574, 1515, 2100
XmnI	GAANNNNTTC	3 cut(s)	621, 984, 2490
XspI	CTAG	1 cut(s)	2411
ZraI	GACGTC	1 cut(s)	1565
Zsp2I	ATGCAT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.