Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026680.1

Orthogroup ID

OG0008127

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1669

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggcaccacctgctggggcagtgctacctactgctgctgcttcaggtttggatctaactactcaatcaccagttctttcaatccaaagaatatgtagcatcttcaatctcttattgccatttggtagacttacagatgtttccctaccatctgcaatgatggaatttgtttcttacttaattatttcatgtattaataatgcaggacaactctcaggtattccacaaacaatgccaggagtagtacaaaatgtattaccgttcgggacagcatatccgacacttcccatgatgccagcccaagccatgactcaacaggctacaaggcatgcacgacgggtatatgttggcgggcttcccccactggccaatgagcagacaattgccacgttctttagtcaagtcatggctgccattggagggaattcagttggtccagtatctgaactggcaggtgatgcggtagtaaatgtctacataaatcatgagaagaagtttgcatttgtggagatgagaacggtcgaagaagcgagtaatgcgatggccttagatgggattatatttgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

189

Amino Acids

19.99

Weight (kDa)

5.07

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008127)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890
malus_domestica	MD05G1315100.v1.1 MD10G1296400.v1.1
prunus_persica	Prupe.4G044200_v2.0.a1 Prupe.4G044200_v2.0.a1
pyrus_communis	pycom05g29270 pycom10g24900
rosa_chinensis	RchiOBHm_Chr5g0008051
rosa_laevigata	RLG00000031531
rosa_multiflora	Rmu_sc0017465.1_g000001 Rmu_sc0026680.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068430
rosa_rugosa	Rorug04G0432900 Rorug04G0433000
rosa_samantha	Rh5AG061000 Rh5BG057800 Rh5CG067900 Rh5DG057000
rosa_wichuraiana	Rw5G005960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	19, 443
Acc36I	ACCTGC	2 cut(s)	19, 443
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	14
AccI	GTMKAC	2 cut(s)	127, 474
AciI	CCGC	2 cut(s)	351, 461
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	164, 424
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	3 cut(s)	14, 420, 552
AgsI	TTSAA	2 cut(s)	81, 106
AjnI	CCWGG	1 cut(s)	235
AlwI	GGATC	1 cut(s)	60
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	366, 543
ApeKI	GCWGC	3 cut(s)	35, 38, 410
ApoI	RAATTY	2 cut(s)	164, 424
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	60, 467
AvaII	GGWCC	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	22, 25, 397
BccI	CCATC	4 cut(s)	154, 157, 535, 545
BciT130I	CCWGG	1 cut(s)	237
BfuAI	ACCTGC	2 cut(s)	19, 443
BisI	GCNGC	3 cut(s)	36, 39, 411
BlsI	GCNGC	3 cut(s)	37, 40, 412
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	3 cut(s)	108, 282, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 420, 552
Bse1I	ACTGG	4 cut(s)	71, 369, 437, 453
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	3 cut(s)	14, 420, 552
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	4 cut(s)	71, 369, 437, 453
BseXI	GCAGC	3 cut(s)	22, 25, 397
BseYI	CCCAGC	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	368, 545
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	14, 420, 552
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	368, 545
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	2 cut(s)	351, 461
BspANI	GGCC	2 cut(s)	368, 545
BspCNI	CTCAG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	19, 443
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	4 cut(s)	71, 369, 437, 453
BssMI	GATC	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	261, 520
BstAPI	GCANNNNNTGC	2 cut(s)	11, 458
BstC8I	GCNNGC	3 cut(s)	297, 330, 353
BstDEI	CTNAG	2 cut(s)	214, 547
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 458, 536
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	3 cut(s)	22, 25, 397
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	368, 545
BtgZI	GCGATG	1 cut(s)	554
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 362
BveI	ACCTGC	2 cut(s)	19, 443
Cac8I	GCNNGC	3 cut(s)	297, 330, 353
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	484
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	6 cut(s)	189, 289, 307, 329, 406, 485
CviJI	RGCY	7 cut(s)	299, 305, 320, 355, 368, 410, 545
CviKI_1	RGCY	7 cut(s)	299, 305, 320, 355, 368, 410, 545
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	214, 547
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	6 cut(s)	192, 292, 310, 332, 409, 488
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	6 cut(s)	188, 288, 306, 328, 405, 484
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	2 cut(s)	127, 474
Fnu4HI	GCNGC	3 cut(s)	36, 39, 411
Fsp4HI	GCNGC	3 cut(s)	36, 39, 411
GluI	GCNGC	3 cut(s)	36, 39, 411
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	368, 545
Hin1II	CATG	6 cut(s)	192, 292, 310, 332, 409, 488
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	60, 467
Hpy166II	GTNNAC	2 cut(s)	128, 475
Hpy188I	TCNGA	2 cut(s)	279, 445
Hpy188III	TCNNGA	2 cut(s)	265, 485
Hpy8I	GTNNAC	2 cut(s)	128, 475
Hpy99I	CGWCG	1 cut(s)	339
HpyCH4III	ACNGT	2 cut(s)	261, 520
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	155, 203, 332, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 458, 536
HpyF3I	CTNAG	2 cut(s)	214, 547
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	6 cut(s)	192, 292, 310, 332, 409, 488
Kzo9I	GATC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	22, 25, 397
LweI	GCATC	3 cut(s)	108, 282, 448
MaeII	ACGT	1 cut(s)	389
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	94, 502, 536
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	4 cut(s)	164, 180, 381, 424
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	1 cut(s)	413
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	2 cut(s)	179, 195
Msp20I	TGGCCA	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	3 cut(s)	11, 458, 536
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	6 cut(s)	192, 292, 310, 332, 409, 488
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PagI	TCATGA	1 cut(s)	484
PaqCI	CACCTGC	2 cut(s)	19, 443
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	37, 40, 412
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	179, 195
SatI	GCNGC	3 cut(s)	36, 39, 411
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	6 cut(s)	13, 31, 49, 220, 392, 457
SfaNI	GCATC	3 cut(s)	108, 282, 448
SinI	GGWCC	1 cut(s)	434
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	4 cut(s)	164, 180, 381, 424
SsiI	CCGC	2 cut(s)	351, 461
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	261, 520
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	522
TasI	AATT	4 cut(s)	164, 180, 381, 424
TatI	WGTACW	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	179, 195
Tru9I	TTAA	2 cut(s)	179, 195
TscAI	CASTG	2 cut(s)	27, 369
TseI	GCWGC	3 cut(s)	35, 38, 410
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	27, 369
Van91I	CCANNNNNTGG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	434
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	2 cut(s)	164, 424
XceI	RCATGY	1 cut(s)	332
XmiI	GTMKAC	2 cut(s)	127, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.