Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008127

Physical Location & Seq

Genomic Coordinates Forward (+)

26633241 .. 26634536

Gene Structure 1296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCTGGAGTGGTACAAAATTCATTACCTTTTGGGGCATTGCATATGGCTCTTCCATTGATGCCAGCTCAAGCCATGACTCAGCAGGCTACAAGGCATGCACGTCGGGTATACGTTGGTGGGCTTCCTCCCTTGGCTAATGAGCAGACAATTGCCACATGCTTTAGCCAAGTCATGGCTGCCATTGGAAGAAATTCTGTTGGTTCAATATCTGAACTTGCAGGTGATGCGGTTGTAAATGTCTATATTAATCATGAGAAGAAGTTTGCATTAGCTGCAACACTTGGTCCCAGCCAACCAAGTCCTCACCTTAACTTGGCTGCCGTTGGTCTCACACAAGGTGCCGTTGGTGGAGCTGAGGGACCTGACCGTATCTTTGTGGGCCTCTCCATGGTTTTAACCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

136

Amino Acids

13.92

Weight (kDa)

8.0

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008127)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890
malus_domestica	MD05G1315100.v1.1 MD10G1296400.v1.1
prunus_persica	Prupe.4G044200_v2.0.a1 Prupe.4G044200_v2.0.a1
pyrus_communis	pycom05g29270 pycom10g24900
rosa_chinensis	RchiOBHm_Chr5g0008051
rosa_laevigata	RLG00000031531
rosa_multiflora	Rmu_sc0017465.1_g000001 Rmu_sc0026680.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068430
rosa_rugosa	Rorug04G0432900 Rorug04G0433000
rosa_samantha	Rh5AG061000 Rh5BG057800 Rh5CG067900 Rh5DG057000
rosa_wichuraiana	Rw5G005960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	2 cut(s)	19, 193
AdeI	CACNNNGTG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	3 cut(s)	175, 316, 391
AgsI	TTSAA	1 cut(s)	207
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	3 cut(s)	68, 275, 356
AluI	AGCT	3 cut(s)	68, 275, 356
Alw26I	GTCTC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	3 cut(s)	179, 275, 320
ApoI	RAATTY	2 cut(s)	19, 193
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AseI	ATTAAT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	287, 362, 382
AsuHPI	GGTGA	2 cut(s)	236, 299
AvaII	GGWCC	2 cut(s)	287, 362
BanI	GGYRCC	1 cut(s)	341
BauI	CACGAG	1 cut(s)	403
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	166, 262, 307
BceAI	ACGGC	2 cut(s)	308, 329
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	180, 276, 321
BlsI	GCNGC	3 cut(s)	181, 277, 322
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	2 cut(s)	287, 362
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	287, 362, 382
BmiI	GGNNCC	3 cut(s)	289, 343, 363
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	51, 217
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	132, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 316, 391
Bse3DI	GCAATG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	132, 390
BseLI	CCNNNNNNNGG	3 cut(s)	175, 316, 391
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	95, 348
BseXI	GCAGC	3 cut(s)	166, 262, 307
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	384
BshNI	GGYRCC	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	273, 375
BslI	CCNNNNNNNGG	3 cut(s)	175, 316, 391
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	273, 375
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	1 cut(s)	335
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	2 cut(s)	94, 349
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	289, 343, 363
BspMI	ACCTGC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	132, 390
BssNAI	GTATAC	1 cut(s)	112
BssSI	CACGAG	1 cut(s)	403
BssT1I	CCWWGG	2 cut(s)	132, 390
Bst1107I	GTATAC	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	403
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	2 cut(s)	227, 275
BstC8I	GCNNGC	3 cut(s)	66, 87, 99
BstDEI	CTNAG	2 cut(s)	81, 357
BstDSI	CCRYGG	1 cut(s)	390
BstMAI	GTCTC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 275
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	2 cut(s)	101, 162
BstSCI	CCNGG	1 cut(s)	4
BstV1I	GCAGC	3 cut(s)	166, 262, 307
BstZ17I	GTATAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	104
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	3 cut(s)	66, 87, 99
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	287, 362, 382
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	6 cut(s)	76, 98, 159, 175, 254, 391
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	81, 357
DraIII	CACNNNGTG	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	132, 390
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	287, 362
EcoO109I	RGGNCCY	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	132, 390
ErhI	CCWWGG	2 cut(s)	132, 390
FaeI	CATG	6 cut(s)	79, 101, 162, 178, 257, 394
FaqI	GGGAC	2 cut(s)	273, 375
FatI	CATG	6 cut(s)	75, 97, 158, 174, 253, 390
FauNDI	CATATG	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	3 cut(s)	180, 276, 321
Fsp4HI	GCNGC	3 cut(s)	180, 276, 321
GluI	GCNGC	3 cut(s)	180, 276, 321
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	384
Hin1II	CATG	6 cut(s)	79, 101, 162, 178, 257, 394
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	2 cut(s)	236, 299
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	254, 405
Hpy8I	GTNNAC	1 cut(s)	112
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	103, 114
HpyCH4V	TGCA	5 cut(s)	43, 101, 221, 269, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 275
HpyF3I	CTNAG	2 cut(s)	81, 357
HpySE526I	ACGT	2 cut(s)	103, 114
Hsp92II	CATG	6 cut(s)	79, 101, 162, 178, 257, 394
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	6 cut(s)	18, 71, 78, 207, 304, 378
Lsp1109I	GCAGC	3 cut(s)	166, 262, 307
LweI	GCATC	2 cut(s)	51, 217
MaeII	ACGT	2 cut(s)	103, 114
MboII	GAAGA	3 cut(s)	44, 201, 271
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	3 cut(s)	19, 150, 193
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	138, 315, 352, 395
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	3 cut(s)	249, 312, 398
MspR9I	CCNGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	227, 275
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	45
NlaIII	CATG	6 cut(s)	79, 101, 162, 178, 257, 394
NlaIV	GGNNCC	3 cut(s)	289, 343, 363
NspI	RCATGY	2 cut(s)	101, 162
PaeI	GCATGC	1 cut(s)	101
PagI	TCATGA	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	212
PciSI	GCTCTTC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	193
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	181, 277, 322
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PpuMI	RGGWCCY	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	3 cut(s)	289, 343, 363
PspPI	GGNCC	3 cut(s)	287, 362, 382
PspPPI	RGGWCCY	1 cut(s)	362
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	249, 312, 398
SatI	GCNGC	3 cut(s)	180, 276, 321
Sau96I	GGNCC	3 cut(s)	287, 362, 382
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	6
SfaNI	GCATC	2 cut(s)	51, 217
SinI	GGWCC	2 cut(s)	287, 362
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
SphI	GCATGC	1 cut(s)	101
Sse9I	AATT	3 cut(s)	19, 150, 193
SsiI	CCGC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	2 cut(s)	132, 390
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	106, 117
TasI	AATT	3 cut(s)	19, 150, 193
Tru1I	TTAA	3 cut(s)	249, 312, 398
Tru9I	TTAA	3 cut(s)	249, 312, 398
TseI	GCWGC	3 cut(s)	179, 275, 320
TspDTI	ATGAA	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	287, 362
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	2 cut(s)	19, 193
XceI	RCATGY	2 cut(s)	101, 162
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.