FvH4_3g04890

U2 snRNP auxiliary factor large subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2822825 .. 2828464
5640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04890.t6

Sequence Viewer

Length: 1587 bp
ATGTCAGACTACGACAACAGCAAGCACAAGTCTCATGGATCGGAGCGTGAGAGCTCGTGGAGGGAGCGAGAGAGGGGTCATGATAGGGAGAGAGATGATGACAGGTATTCGAGAGATACGAGGGACTACAAGGATAGGAGTGGAAGGTTTGACAGAGGGAGGAACAAGTATAGTGGATATAGCGGTCGTCGAAATCAGGATTATGACAGGAGTCGTGATTATGAACAAGATAGGCATCATGATCATGATCAAGATAGAGATAGGAGGCATAGACATAGGTCGCCTTCGCCTTCAAGGGAAGAAGATAGGGATAGATCAACCCGTTCTCGTTCAAAGAGCAAGCGCGCAAGTGGTTTTGACATGGCACCACCTGCTGGGGCAGTGCTACCTTCTGCTGCTTCTTCAGGTTTTCCACAAACAATGCCGGGAGTGGTACAAAATGTAATGTCGTTCGGAACAGCATATCCTACTCTTCCCATGATGCCAGCCCAAGCCATGACTCAACAGGCTACAAGGCATGCACGACGGGTATATGTTGGTGGGCTTCCCCCACTGGCCAATGAGCAGACAATTGCCACGTTCTTTAGCCAAGTCATGGCTGCCATCGGAGGCAATTCGATTGGTTCAGTTTCTGAATTGGCAGGTGATGCGGTAGTAAACGTCTACATAAATCATGAGAAGAAGTTTGCATTTGTGGAGATGAGAACGGTTGAAGAAGCAAGTAATGCAATGGCCTTAGATGGGATTATATTTGAGGGTGTTGCTGTGAGGGTACGAAGGCCAACAGACTACAATCCAACCTTGGCTGCCGCCCTTGGTCCTAACCAACCAAGTCCTCATCTCAACTTGGCTGCTGTGGGGCTTACACAAGGTGCTGTTGGTGGAGCTGAGGGACCTGATCGTATCTTTGTGGGTGGACTACCATACTACTTCACTGAAGCACAGATAAGAGAACTGCTGCAATCCTTTGGACCACTTCGTGGATTTGACCTCGTTAAGGATAAAGATACGGGAAATTCTAAAGGATATGGATTCTGTGTTTATCAGGATCCAGCTGTGACTGATATTGCCTGTGGTGCTCTTAATGGCTTAAAAATGGGAGATAAAACTCTAACTGTCCGGCGTGCTACAGCCAACAGCGTGCAATCTAAATCAGAGCAAGAAAATATCTTGGTACAGGCACAACAGCATATAGCTATGCAGAAAATGGCGATGCAGGTTGTTGACATGAATTCTTTTGGGAATGGGATGGCATCAGTAACTACAGAAATGCCCACAAAAGTCCTTTGTTTGACAGAGGCAATTACTGCTGAACAACTGGGTGATGACGAAGAGTACGTAGAAATATTAGAAGACATGAAGGATGAGTGCAGCAAATTTGGAACTCTGTTGAATGTAGTTATTCCCCGTTCCAATCAAGATGGAGAAGAGAGTTCAGGTGTTGGAAAGGTCTTCTTGGAATATTCTGACACCGGAAGTTGTGCCAATGCAAAGAATGTACTTGGTGGGAGGAAATTTGGAGGGAACATAGTGCATGCGTATTATTATCCTGAAGACAAGTACTCTAGCAAAGACTATAGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

58.39

Weight (kDa)

6.16

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 379, 632
Acc36I ACCTGC 3 cut(s) 379, 632, 1207
AccB1I GGYRCC 1 cut(s) 364
AccB7I CCANNNNNTGG 3 cut(s) 374, 595, 980
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 345
AciI CCGC 3 cut(s) 183, 650, 810
AclWI GGATC 3 cut(s) 46, 1043, 1056
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 4 cut(s) 1015, 1231, 1376, 1514
AcuI CTGAAG 3 cut(s) 387, 957, 1572
AdeI CACNNNGTG 2 cut(s) 872, 980
AfaI GTAC 6 cut(s) 435, 774, 1176, 1337, 1500, 1562
AfiI CCNNNNNNNGG 5 cut(s) 374, 595, 741, 980, 997
AgsI TTSAA 4 cut(s) 294, 333, 713, 1393
AloI GAACNNNNNNTCC 2 cut(s) 448, 480
AluBI AGCT 4 cut(s) 54, 887, 1055, 1196
AluI AGCT 4 cut(s) 54, 887, 1055, 1196
Alw21I GWGCWC 2 cut(s) 56, 1081
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 3 cut(s) 46, 1043, 1056
AlwNI CAGNNNCTG 1 cut(s) 632
AoxI GGCC 3 cut(s) 555, 732, 779
ApeKI GCWGC 6 cut(s) 395, 599, 806, 851, 958, 1371
ApoI RAATTY 4 cut(s) 1015, 1231, 1376, 1514
AspLEI GCGC 2 cut(s) 345, 347
AspS9I GGNCC 3 cut(s) 818, 893, 971
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 2 cut(s) 656, 1334
AvaII GGWCC 3 cut(s) 818, 893, 971
BalI TGGCCA 1 cut(s) 557
BamHI GGATCC 1 cut(s) 1048
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 56
BauI CACGAG 1 cut(s) 55
BbsI GAAGAC 3 cut(s) 1359, 1444, 1560
Bbv12I GWGCWC 2 cut(s) 56, 1081
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 6 cut(s) 382, 586, 793, 838, 945, 1383
BccI CCATC 4 cut(s) 611, 734, 1243, 1415
BclI TGATCA 2 cut(s) 241, 247
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 1566
BfmI CTRYAG 3 cut(s) 1128, 1263, 1576
BfuAI ACCTGC 3 cut(s) 379, 632, 1207
BisI GCNGC 7 cut(s) 396, 600, 807, 810, 852, 959, 1372
BlsI GCNGC 7 cut(s) 397, 601, 808, 811, 853, 960, 1373
BmcAI AGTACT 1 cut(s) 1562
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 3 cut(s) 818, 893, 971
BmgT120I GGNCC 3 cut(s) 818, 893, 971
BmiI GGNNCC 3 cut(s) 366, 894, 1050
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 1328
BmsI GCATC 5 cut(s) 244, 471, 637, 1203, 1262
BmuI ACTGGG 1 cut(s) 1328
BoxI GACNNNNGTC 2 cut(s) 210, 277
BpiI GAAGAC 3 cut(s) 1359, 1444, 1560
Bpu10I CCTNAGC 1 cut(s) 888
BpuMI CCSGG 1 cut(s) 426
BsaAI YACGTR 1 cut(s) 1339
BsaBI GATNNNNATC 2 cut(s) 234, 246
BsaJI CCNNGG 2 cut(s) 801, 814
BsaWI WCCGGW 1 cut(s) 1472
Bsc4I CCNNNNNNNGG 5 cut(s) 374, 595, 741, 980, 997
Bse1I ACTGG 2 cut(s) 558, 1323
Bse3DI GCAATG 1 cut(s) 735
Bse8I GATNNNNATC 2 cut(s) 234, 246
BseDI CCNNGG 2 cut(s) 801, 814
BseGI GGATG 2 cut(s) 1254, 1369
BseJI GATNNNNATC 2 cut(s) 234, 246
BseLI CCNNNNNNNGG 5 cut(s) 374, 595, 741, 980, 997
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 1 cut(s) 879
BseNI ACTGG 2 cut(s) 558, 1323
BsePI GCGCGC 1 cut(s) 343
BseXI GCAGC 6 cut(s) 382, 586, 793, 838, 945, 1383
BseYI CCCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 1390
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 557, 734, 781
BshNI GGYRCC 1 cut(s) 364
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 56, 1081
BsiSI CCGG 3 cut(s) 425, 1120, 1473
BslFI GGGAC 2 cut(s) 137, 906
BslI CCNNNNNNNGG 5 cut(s) 374, 595, 741, 980, 997
BsmAI GTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 137, 906
BsnI GGCC 3 cut(s) 557, 734, 781
Bsp1286I GDGCHC 2 cut(s) 56, 1081
Bsp143I GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
BspACI CCGC 3 cut(s) 183, 650, 810
BspANI GGCC 3 cut(s) 557, 734, 781
BspCNI CTCAG 1 cut(s) 880
BspFNI CGCG 1 cut(s) 345
BspHI TCATGA 4 cut(s) 79, 238, 244, 673
BspLI GGNNCC 3 cut(s) 366, 894, 1050
BspMI ACCTGC 3 cut(s) 379, 632, 1207
BspPI GGATC 3 cut(s) 46, 1043, 1056
BspT107I GGYRCC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 735
BsrI ACTGG 2 cut(s) 558, 1323
BssECI CCNNGG 2 cut(s) 801, 814
BssHII GCGCGC 1 cut(s) 343
BssMI GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
BssSI CACGAG 1 cut(s) 55
BssT1I CCWWGG 2 cut(s) 801, 814
Bst2BI CACGAG 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 709, 1117
Bst6I CTCTTC 3 cut(s) 477, 1326, 1422
BstAPI GCANNNNNTGC 4 cut(s) 371, 647, 725, 1307
BstBAI YACGTR 1 cut(s) 1339
BstC8I GCNNGC 8 cut(s) 23, 341, 345, 486, 519, 1125, 1142, 1536
BstDEI CTNAG 2 cut(s) 736, 888
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 2 cut(s) 1254, 1369
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 2 cut(s) 345, 347
BstKTI GATC 6 cut(s) 41, 244, 250, 317, 901, 1051
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 5 cut(s) 371, 647, 725, 1076, 1307
BstNSI RCATGY 2 cut(s) 521, 1538
BstPAI GACNNNNGTC 2 cut(s) 210, 277
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 3 cut(s) 1128, 1263, 1576
BstSNI TACGTA 1 cut(s) 1339
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 6 cut(s) 382, 586, 793, 838, 945, 1383
BstV2I GAAGAC 3 cut(s) 1359, 1444, 1560
BstX2I RGATCY 1 cut(s) 1048
BstYI RGATCY 1 cut(s) 1048
BsuRI GGCC 3 cut(s) 557, 734, 781
BtgZI GCGATG 1 cut(s) 1226
BtsCI GGATG 2 cut(s) 1254, 1369
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 3 cut(s) 387, 551, 933
BveI ACCTGC 3 cut(s) 379, 632, 1207
Cac8I GCNNGC 8 cut(s) 23, 341, 345, 486, 519, 1125, 1142, 1536
CaiI CAGNNNCTG 1 cut(s) 632
CciI TCATGA 4 cut(s) 79, 238, 244, 673
CfoI GCGC 2 cut(s) 345, 347
Cfr13I GGNCC 3 cut(s) 818, 893, 971
Csp6I GTAC 6 cut(s) 434, 773, 1175, 1336, 1499, 1561
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviQI GTAC 6 cut(s) 434, 773, 1175, 1336, 1499, 1561
DdeI CTNAG 2 cut(s) 736, 888
DpnI GATC 6 cut(s) 40, 243, 249, 316, 900, 1050
DpnII GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
DraIII CACNNNGTG 2 cut(s) 872, 980
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 3 cut(s) 477, 1326, 1422
EarI CTCTTC 3 cut(s) 477, 1326, 1422
Ecl136II GAGCTC 1 cut(s) 54
Eco105I TACGTA 1 cut(s) 1339
Eco130I CCWWGG 2 cut(s) 801, 814
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 3 cut(s) 818, 893, 971
Eco53kI GAGCTC 1 cut(s) 54
Eco57I CTGAAG 3 cut(s) 387, 957, 1572
EcoICRI GAGCTC 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 1231
EcoT14I CCWWGG 2 cut(s) 801, 814
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 801, 814
FalI AAGNNNNNCTT 2 cut(s) 1439, 1471
FaqI GGGAC 2 cut(s) 137, 906
FbaI TGATCA 2 cut(s) 241, 247
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 7 cut(s) 396, 600, 807, 810, 852, 959, 1372
FokI GGATG 2 cut(s) 1261, 1376
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 7 cut(s) 396, 600, 807, 810, 852, 959, 1372
FspBI CTAG 1 cut(s) 1566
GlaI GCGC 2 cut(s) 344, 346
GluI GCNGC 7 cut(s) 396, 600, 807, 810, 852, 959, 1372
GsaI CCCAGC 1 cut(s) 378
HaeIII GGCC 3 cut(s) 557, 734, 781
HapII CCGG 3 cut(s) 425, 1120, 1473
HhaI GCGC 2 cut(s) 345, 347
Hin6I GCGC 2 cut(s) 343, 345
HinP1I GCGC 2 cut(s) 343, 345
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HinfI GANTC 3 cut(s) 211, 499, 1032
HpaII CCGG 3 cut(s) 425, 1120, 1473
HphI GGTGA 2 cut(s) 656, 1334
Hpy166II GTNNAC 4 cut(s) 658, 664, 917, 1225
Hpy188I TCNGA 7 cut(s) 7, 43, 455, 608, 634, 1156, 1468
Hpy8I GTNNAC 4 cut(s) 658, 664, 917, 1225
Hpy99I CGWCG 2 cut(s) 192, 528
HpyAV CCTTC 6 cut(s) 138, 294, 300, 399, 771, 1354
HpyCH4III ACNGT 2 cut(s) 709, 1117
HpyCH4IV ACGT 3 cut(s) 578, 660, 1338
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 647, 725, 1076, 1307
HpyF3I CTNAG 2 cut(s) 736, 888
HpySE526I ACGT 3 cut(s) 578, 660, 1338
HspAI GCGC 2 cut(s) 343, 345
Ksp22I TGATCA 2 cut(s) 241, 247
Kzo9I GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
LmnI GCTCC 3 cut(s) 43, 64, 884
Lsp1109I GCAGC 6 cut(s) 382, 586, 793, 838, 945, 1383
LweI GCATC 5 cut(s) 244, 471, 637, 1203, 1262
MaeI CTAG 1 cut(s) 1566
MaeII ACGT 3 cut(s) 578, 660, 1338
MaeIII GTNAC 2 cut(s) 1057, 1258
MalI GATC 6 cut(s) 40, 243, 249, 316, 900, 1050
MboI GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 1048
MhlI GDGCHC 2 cut(s) 56, 1081
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 8 cut(s) 570, 613, 635, 1015, 1231, 1302, 1376, 1514
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 2 cut(s) 220, 493
MmeI TCCRAC 2 cut(s) 821, 1423
Mox20I TGGCCA 1 cut(s) 557
MscI TGGCCA 1 cut(s) 557
MseI TTAA 3 cut(s) 996, 1083, 1091
MslI CAYNNNNRTG 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 1055
MspI CCGG 3 cut(s) 425, 1120, 1473
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 570
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 5 cut(s) 371, 647, 725, 1076, 1307
NciI CCSGG 1 cut(s) 426
NdeII GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
NlaIV GGNNCC 3 cut(s) 366, 894, 1050
NmuCI GTSAC 1 cut(s) 1057
NspI RCATGY 2 cut(s) 521, 1538
PaeI GCATGC 2 cut(s) 521, 1538
PagI TCATGA 4 cut(s) 79, 238, 244, 673
PaqCI CACCTGC 2 cut(s) 379, 632
PauI GCGCGC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 2 cut(s) 116, 1335
PfeI GAWTC 1 cut(s) 1032
PflMI CCANNNNNTGG 3 cut(s) 374, 595, 980
PkrI GCNGC 7 cut(s) 397, 601, 808, 811, 853, 960, 1373
PleI GAGTC 2 cut(s) 219, 493
PpsI GAGTC 2 cut(s) 219, 493
Ppu21I YACGTR 1 cut(s) 1339
PpuMI RGGWCCY 1 cut(s) 893
PshAI GACNNNNGTC 2 cut(s) 210, 277
Psp124BI GAGCTC 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 893
PspFI CCCAGC 1 cut(s) 374
PspN4I GGNNCC 3 cut(s) 366, 894, 1050
PspPI GGNCC 3 cut(s) 818, 893, 971
PspPPI RGGWCCY 1 cut(s) 893
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 1048
PteI GCGCGC 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 1055
RsaI GTAC 6 cut(s) 435, 774, 1176, 1337, 1500, 1562
RsaNI GTAC 6 cut(s) 434, 773, 1175, 1336, 1499, 1561
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 3 cut(s) 996, 1083, 1091
SatI GCNGC 7 cut(s) 396, 600, 807, 810, 852, 959, 1372
Sau3AI GATC 6 cut(s) 38, 241, 247, 314, 898, 1048
Sau96I GGNCC 3 cut(s) 818, 893, 971
ScaI AGTACT 1 cut(s) 1562
SchI GAGTC 2 cut(s) 220, 493
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 56, 1081
SfaNI GCATC 5 cut(s) 244, 471, 637, 1203, 1262
SfcI CTRYAG 3 cut(s) 1128, 1263, 1576
SinI GGWCC 3 cut(s) 818, 893, 971
SmiMI CAYNNNNRTG 1 cut(s) 243
SnaBI TACGTA 1 cut(s) 1339
SphI GCATGC 2 cut(s) 521, 1538
Sse9I AATT 8 cut(s) 570, 613, 635, 1015, 1231, 1302, 1376, 1514
SsiI CCGC 3 cut(s) 183, 650, 810
SspI AATATT 2 cut(s) 1347, 1463
SspMI CTAG 1 cut(s) 1566
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 2 cut(s) 801, 814
TaaI ACNGT 2 cut(s) 709, 1117
TaiI ACGT 3 cut(s) 581, 663, 1341
TaqI TCGA 3 cut(s) 110, 190, 617
TasI AATT 8 cut(s) 570, 613, 635, 1015, 1231, 1302, 1376, 1514
TatI WGTACW 2 cut(s) 1498, 1560
TauI GCSGC 1 cut(s) 812
TfiI GAWTC 1 cut(s) 1032
Tru1I TTAA 3 cut(s) 996, 1083, 1091
Tru9I TTAA 3 cut(s) 996, 1083, 1091
TscAI CASTG 3 cut(s) 387, 558, 940
TseFI GTSAC 1 cut(s) 1057
TseI GCWGC 6 cut(s) 395, 599, 806, 851, 958, 1371
Tsp45I GTSAC 1 cut(s) 1057
TspDTI ATGAA 3 cut(s) 237, 1244, 1373
TspRI CASTG 3 cut(s) 387, 558, 940
Van91I CCANNNNNTGG 3 cut(s) 374, 595, 980
VpaK11BI GGWCC 3 cut(s) 818, 893, 971
XagI CCTNNNNNAGG 1 cut(s) 995
XapI RAATTY 4 cut(s) 1015, 1231, 1376, 1514
XceI RCATGY 2 cut(s) 521, 1538
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 1 cut(s) 1566
ZrmI AGTACT 1 cut(s) 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.