Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017465.1

Orthogroup ID

OG0008127

Physical Location & Seq

Genomic Coordinates Reverse (-)

1196 .. 5105

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017465.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

atggcaccacctgctggggcagtgctacctactgctgctgcttcaggtttggatctaactactgaatcaccagttctttcaatccaaagaatatgtagcatcttcaatctcttattgccatttggtagacttacagatgtttccctaccatctgcaatgatggaatttgtttcttacttaattatttcatgtattaataatgcaggacaactctcaggtattccacaaacaatgccaggagtagtacaaaatgtattaccgttcgggacagcatatccgacacttcccatgatgccagcccaagccatgactcaacaggctacaaggcatgcacgacgggaaaatgttggcgggcttcccccactggccaatgagcagacaattgccacgttctttagtcaagtcatggctgccattggagggaattcagttggtccagtatctgaactggcaggtgatgcggtagtaaatgtctacataaatcatgagaagaagtttgcatttgtggagatgagaacggtcgaagaagcgagtaatgcgatggccttagatgggattatatttgagggggttgctgtgagggtacgaaggccaacagactacaatcctacattagctgcagcacttggtcctaaccaaccaagtccccatctcaacttggctgctgtggggctcacacaaggtgctgttggtggagcagagggacctgatcgtatctttgtgggtggactaccatactacttcactgaagcacagataagggaattgctacaatcctttggaccacttcgtggatttgacctcgtgaaggataaagatacaggaaattctaaaggatatgggttctgtgtttatcaggatccagctgtgaccgacattgcttgtggtgctctgaatggcttaaaaatgggcgataaaactttaaccgtccggcgtgctactgccaacagtgtgcaatctaaatcagagcaagaaaatatcttggtacaggcacaacagcatattgctatgcagaaaatggcgatgcaggttgttgacatgaatcgttttgggaatgggatggcatcagtggtaactacagaaatgcccacaaaagtcctttgtttgacagaggcaattactgctgatcaactaggtgacgatgaagagtacgtggaaatattagaagacatgaaggatgaatgcagcaaatttggaactctgttgaatgttgttattccccgttctaatcaagatggagaagagatctcaggtgttggaaaggtgttcttggaatattctgatactggaagttgtgccaatgcaaagaacgtacttggtgggagaaaatttggagggaacatagtgaatgcgtattattatcctgaagacaaatactatagcaaagactatagcgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

466

Amino Acids

49.9

Weight (kDa)

4.86

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008127)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890
malus_domestica	MD05G1315100.v1.1 MD10G1296400.v1.1
prunus_persica	Prupe.4G044200_v2.0.a1 Prupe.4G044200_v2.0.a1
pyrus_communis	pycom05g29270 pycom10g24900
rosa_chinensis	RchiOBHm_Chr5g0008051
rosa_laevigata	RLG00000031531
rosa_multiflora	Rmu_sc0017465.1_g000001 Rmu_sc0026680.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068430
rosa_rugosa	Rorug04G0432900 Rorug04G0433000
rosa_samantha	Rh5AG061000 Rh5BG057800 Rh5CG067900 Rh5DG057000
rosa_wichuraiana	Rw5G005960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	19, 443
Acc36I	ACCTGC	3 cut(s)	19, 443, 1018
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	14, 791
AccI	GTMKAC	2 cut(s)	127, 474
AciI	CCGC	2 cut(s)	351, 461
AclWI	GGATC	3 cut(s)	60, 854, 867
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	5 cut(s)	164, 424, 826, 1190, 1328
AcuI	CTGAAG	3 cut(s)	27, 768, 1386
AdeI	CACNNNGTG	2 cut(s)	683, 791
AfaI	GTAC	5 cut(s)	246, 585, 987, 1151, 1314
AfiI	CCNNNNNNNGG	5 cut(s)	14, 420, 552, 791, 808
AgsI	TTSAA	3 cut(s)	81, 106, 1207
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	617, 866
AluI	AGCT	2 cut(s)	617, 866
Alw21I	GWGCWC	1 cut(s)	892
AlwI	GGATC	3 cut(s)	60, 854, 867
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	3 cut(s)	366, 543, 590
ApeKI	GCWGC	7 cut(s)	35, 38, 410, 617, 620, 662, 1185
ApoI	RAATTY	5 cut(s)	164, 424, 826, 1190, 1328
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	1397
AspS9I	GGNCC	4 cut(s)	434, 629, 704, 782
AsuHPI	GGTGA	3 cut(s)	60, 467, 1148
AvaII	GGWCC	4 cut(s)	434, 629, 704, 782
BalI	TGGCCA	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	859
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	675
BauI	CACGAG	1 cut(s)	803
BbsI	GAAGAC	2 cut(s)	1173, 1374
Bbv12I	GWGCWC	1 cut(s)	892
BbvI	GCAGC	7 cut(s)	22, 25, 397, 604, 632, 649, 1197
BccI	CCATC	7 cut(s)	154, 157, 535, 545, 657, 1054, 1229
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	1 cut(s)	1126
BfaI	CTAG	1 cut(s)	1133
BfmI	CTRYAG	4 cut(s)	618, 1077, 1378, 1390
BfuAI	ACCTGC	3 cut(s)	19, 443, 1018
BglII	AGATCT	1 cut(s)	1245
BisI	GCNGC	7 cut(s)	36, 39, 411, 618, 621, 663, 1186
BlsI	GCNGC	7 cut(s)	37, 40, 412, 619, 622, 664, 1187
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	4 cut(s)	434, 629, 704, 782
BmgT120I	GGNCC	4 cut(s)	434, 629, 704, 782
BmiI	GGNNCC	3 cut(s)	6, 705, 861
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	5 cut(s)	108, 282, 448, 1014, 1073
BpiI	GAAGAC	2 cut(s)	1173, 1374
BsaAI	YACGTR	1 cut(s)	1153
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 420, 552, 791, 808
Bse1I	ACTGG	5 cut(s)	71, 369, 437, 453, 1291
Bse3DI	GCAATG	2 cut(s)	162, 876
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	1065, 1183
BseLI	CCNNNNNNNGG	5 cut(s)	14, 420, 552, 791, 808
BseMI	GCAATG	2 cut(s)	162, 876
BseMII	CTCAG	2 cut(s)	228, 1263
BseNI	ACTGG	5 cut(s)	71, 369, 437, 453, 1291
BseXI	GCAGC	7 cut(s)	22, 25, 397, 604, 632, 649, 1197
BseYI	CCCAGC	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	3 cut(s)	368, 545, 592
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	892
BsiSI	CCGG	1 cut(s)	931
BslFI	GGGAC	3 cut(s)	280, 630, 717
BslI	CCNNNNNNNGG	5 cut(s)	14, 420, 552, 791, 808
BsmFI	GGGAC	3 cut(s)	280, 630, 717
BsmI	GAATGC	2 cut(s)	1187, 1354
BsnI	GGCC	3 cut(s)	368, 545, 592
Bsp1286I	GDGCHC	2 cut(s)	675, 892
Bsp143I	GATC	5 cut(s)	52, 709, 859, 1126, 1245
BspACI	CCGC	2 cut(s)	351, 461
BspANI	GGCC	3 cut(s)	368, 545, 592
BspCNI	CTCAG	2 cut(s)	227, 1262
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	6, 705, 861
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	3 cut(s)	19, 443, 1018
BspPI	GGATC	3 cut(s)	60, 854, 867
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	2 cut(s)	162, 876
BsrI	ACTGG	5 cut(s)	71, 369, 437, 453, 1291
BssMI	GATC	5 cut(s)	52, 709, 859, 1126, 1245
BssSI	CACGAG	1 cut(s)	803
Bst2BI	CACGAG	1 cut(s)	803
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	4 cut(s)	261, 520, 928, 950
Bst6I	CTCTTC	2 cut(s)	1140, 1236
BstAPI	GCANNNNNTGC	3 cut(s)	11, 458, 1121
BstBAI	YACGTR	1 cut(s)	1153
BstC8I	GCNNGC	4 cut(s)	297, 330, 353, 936
BstDEI	CTNAG	3 cut(s)	214, 547, 1249
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstF5I	GGATG	2 cut(s)	1065, 1183
BstHHI	GCGC	1 cut(s)	1397
BstKTI	GATC	5 cut(s)	55, 712, 862, 1129, 1248
BstMBI	GATC	5 cut(s)	52, 709, 859, 1126, 1245
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 458, 536, 887, 1121
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	4 cut(s)	618, 1077, 1378, 1390
BstV1I	GCAGC	7 cut(s)	22, 25, 397, 604, 632, 649, 1197
BstV2I	GAAGAC	2 cut(s)	1173, 1374
BstX2I	RGATCY	3 cut(s)	52, 859, 1245
BstYI	RGATCY	3 cut(s)	52, 859, 1245
BsuRI	GGCC	3 cut(s)	368, 545, 592
BtgZI	GCGATG	2 cut(s)	554, 1037
BtsCI	GGATG	2 cut(s)	1065, 1183
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	5 cut(s)	27, 362, 744, 955, 1074
BveI	ACCTGC	3 cut(s)	19, 443, 1018
Cac8I	GCNNGC	4 cut(s)	297, 330, 353, 936
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	1397
Cfr13I	GGNCC	4 cut(s)	434, 629, 704, 782
Csp6I	GTAC	5 cut(s)	245, 584, 986, 1150, 1313
CviAII	CATG	8 cut(s)	189, 289, 307, 329, 406, 485, 1039, 1171
CviQI	GTAC	5 cut(s)	245, 584, 986, 1150, 1313
DdeI	CTNAG	3 cut(s)	214, 547, 1249
DpnI	GATC	5 cut(s)	54, 711, 861, 1128, 1247
DpnII	GATC	5 cut(s)	52, 709, 859, 1126, 1245
DraIII	CACNNNGTG	2 cut(s)	683, 791
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	1140, 1236
EarI	CTCTTC	2 cut(s)	1140, 1236
Eco24I	GRGCYC	1 cut(s)	675
Eco47I	GGWCC	4 cut(s)	434, 629, 704, 782
Eco57I	CTGAAG	3 cut(s)	27, 768, 1386
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	704
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	675
FaeI	CATG	8 cut(s)	192, 292, 310, 332, 409, 488, 1042, 1174
FalI	AAGNNNNNCTT	2 cut(s)	1253, 1285
FaqI	GGGAC	3 cut(s)	280, 630, 717
FatI	CATG	8 cut(s)	188, 288, 306, 328, 405, 484, 1038, 1170
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	1126
FblI	GTMKAC	2 cut(s)	127, 474
Fnu4HI	GCNGC	7 cut(s)	36, 39, 411, 618, 621, 663, 1186
FokI	GGATG	2 cut(s)	1072, 1190
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	7 cut(s)	36, 39, 411, 618, 621, 663, 1186
FspBI	CTAG	1 cut(s)	1133
GlaI	GCGC	1 cut(s)	1396
GluI	GCNGC	7 cut(s)	36, 39, 411, 618, 621, 663, 1186
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	368, 545, 592
HapII	CCGG	1 cut(s)	931
HhaI	GCGC	1 cut(s)	1397
Hin1II	CATG	8 cut(s)	192, 292, 310, 332, 409, 488, 1042, 1174
Hin6I	GCGC	1 cut(s)	1395
HinP1I	GCGC	1 cut(s)	1395
HincII	GTYRAC	1 cut(s)	1036
HindII	GTYRAC	1 cut(s)	1036
HinfI	GANTC	3 cut(s)	65, 310, 1042
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	3 cut(s)	60, 467, 1148
Hpy166II	GTNNAC	4 cut(s)	128, 475, 728, 1036
Hpy188I	TCNGA	5 cut(s)	279, 445, 894, 967, 1282
Hpy188III	TCNNGA	6 cut(s)	265, 485, 805, 857, 1232, 1364
Hpy8I	GTNNAC	4 cut(s)	128, 475, 728, 1036
Hpy99I	CGWCG	1 cut(s)	339
HpyAV	CCTTC	3 cut(s)	582, 802, 1168
HpyCH4III	ACNGT	4 cut(s)	261, 520, 928, 950
HpyCH4IV	ACGT	3 cut(s)	389, 1152, 1311
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 458, 536, 887, 1121
HpyF3I	CTNAG	3 cut(s)	214, 547, 1249
HpySE526I	ACGT	3 cut(s)	389, 1152, 1311
Hsp92II	CATG	8 cut(s)	192, 292, 310, 332, 409, 488, 1042, 1174
HspAI	GCGC	1 cut(s)	1395
Ksp22I	TGATCA	1 cut(s)	1126
Kzo9I	GATC	5 cut(s)	52, 709, 859, 1126, 1245
LmnI	GCTCC	1 cut(s)	695
Lsp1109I	GCAGC	7 cut(s)	22, 25, 397, 604, 632, 649, 1197
LweI	GCATC	5 cut(s)	108, 282, 448, 1014, 1073
MaeI	CTAG	1 cut(s)	1133
MaeII	ACGT	3 cut(s)	389, 1152, 1311
MaeIII	GTNAC	3 cut(s)	868, 1072, 1136
MalI	GATC	5 cut(s)	54, 711, 861, 1128, 1247
MboI	GATC	5 cut(s)	52, 709, 859, 1126, 1245
MboII	GAAGA	7 cut(s)	94, 502, 536, 1157, 1178, 1253, 1379
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	3 cut(s)	52, 859, 1245
MhlI	GDGCHC	2 cut(s)	675, 892
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	9 cut(s)	164, 180, 381, 424, 764, 826, 1116, 1190, 1328
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	302, 1237
MnlI	CCTC	7 cut(s)	413, 559, 573, 694, 812, 1105, 1328
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	4 cut(s)	179, 195, 902, 923
Msp20I	TGGCCA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	1 cut(s)	931
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	2 cut(s)	1187, 1354
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	11, 458, 536, 887, 1121
NdeII	GATC	5 cut(s)	52, 709, 859, 1126, 1245
NlaIII	CATG	8 cut(s)	192, 292, 310, 332, 409, 488, 1042, 1174
NlaIV	GGNNCC	3 cut(s)	6, 705, 861
NmuCI	GTSAC	2 cut(s)	868, 1136
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PagI	TCATGA	1 cut(s)	484
PaqCI	CACCTGC	2 cut(s)	19, 443
PctI	GAATGC	2 cut(s)	1187, 1354
PfeI	GAWTC	2 cut(s)	65, 1042
PflMI	CCANNNNNTGG	2 cut(s)	14, 791
PkrI	GCNGC	7 cut(s)	37, 40, 412, 619, 622, 664, 1187
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	1153
PpuMI	RGGWCCY	1 cut(s)	704
PshBI	ATTAAT	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	6, 705, 861
PspPI	GGNCC	4 cut(s)	434, 629, 704, 782
PspPPI	RGGWCCY	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	52, 859, 1245
PvuII	CAGCTG	1 cut(s)	866
RsaI	GTAC	5 cut(s)	246, 585, 987, 1151, 1314
RsaNI	GTAC	5 cut(s)	245, 584, 986, 1150, 1313
SaqAI	TTAA	4 cut(s)	179, 195, 902, 923
SatI	GCNGC	7 cut(s)	36, 39, 411, 618, 621, 663, 1186
Sau3AI	GATC	5 cut(s)	52, 709, 859, 1126, 1245
Sau96I	GGNCC	4 cut(s)	434, 629, 704, 782
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	675, 892
SfaNI	GCATC	5 cut(s)	108, 282, 448, 1014, 1073
SfcI	CTRYAG	4 cut(s)	618, 1077, 1378, 1390
SinI	GGWCC	4 cut(s)	434, 629, 704, 782
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	9 cut(s)	164, 180, 381, 424, 764, 826, 1116, 1190, 1328
SsiI	CCGC	2 cut(s)	351, 461
SspI	AATATT	2 cut(s)	1161, 1277
SspMI	CTAG	1 cut(s)	1133
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	4 cut(s)	261, 520, 928, 950
TaiI	ACGT	3 cut(s)	392, 1155, 1314
TaqI	TCGA	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	887
TasI	AATT	9 cut(s)	164, 180, 381, 424, 764, 826, 1116, 1190, 1328
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	65, 1042
Tru1I	TTAA	4 cut(s)	179, 195, 902, 923
Tru9I	TTAA	4 cut(s)	179, 195, 902, 923
TscAI	CASTG	5 cut(s)	27, 369, 751, 955, 1074
TseFI	GTSAC	2 cut(s)	868, 1136
TseI	GCWGC	7 cut(s)	35, 38, 410, 617, 620, 662, 1185
Tsp45I	GTSAC	2 cut(s)	868, 1136
TspDTI	ATGAA	5 cut(s)	177, 1055, 1158, 1187, 1194
TspRI	CASTG	5 cut(s)	27, 369, 751, 955, 1074
Van91I	CCANNNNNTGG	2 cut(s)	14, 791
VpaK11BI	GGWCC	4 cut(s)	434, 629, 704, 782
VspI	ATTAAT	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	806
XapI	RAATTY	5 cut(s)	164, 424, 826, 1190, 1328
XceI	RCATGY	1 cut(s)	332
XmiI	GTMKAC	2 cut(s)	127, 474
XspI	CTAG	1 cut(s)	1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.