U2 snRNP auxiliary factor large subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 FvH4_3g04890 |
| malus_domestica | MD05G1315100.v1.1 MD10G1296400.v1.1 |
| prunus_persica | Prupe.4G044200_v2.0.a1 Prupe.4G044200_v2.0.a1 |
| pyrus_communis | pycom05g29270 pycom10g24900 |
| rosa_chinensis | RchiOBHm_Chr5g0008051 |
| rosa_laevigata | RLG00000031531 |
| rosa_multiflora | Rmu_sc0017465.1_g000001 Rmu_sc0026680.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00068430 |
| rosa_rugosa | Rorug04G0432900 Rorug04G0433000 |
| rosa_samantha | Rh5AG061000 Rh5BG057800 Rh5CG067900 Rh5DG057000 |
| rosa_wichuraiana | Rw5G005960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 352, 617 |
| Acc36I | ACCTGC | 3 cut(s) | 352, 617, 1192 |
| AccB1I | GGYRCC | 3 cut(s) | 17, 337, 1061 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 347, 580 |
| AccI | GTMKAC | 2 cut(s) | 116, 648 |
| AccII | CGCG | 3 cut(s) | 48, 84, 259 |
| AciI | CCGC | 6 cut(s) | 82, 84, 184, 635, 754, 791 |
| AclWI | GGATC | 3 cut(s) | 1028, 1041, 1410 |
| AcsI | RAATTY | 3 cut(s) | 598, 1364, 1502 |
| AcuI | CTGAAG | 1 cut(s) | 942 |
| AdeI | CACNNNGTG | 1 cut(s) | 857 |
| AfaI | GTAC | 4 cut(s) | 319, 420, 759, 1161 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 347, 580, 594, 965, 982, 1479, 1558 |
| AgeI | ACCGGT | 1 cut(s) | 111 |
| AgsI | TTSAA | 4 cut(s) | 276, 306, 698, 1216 |
| AjiI | CACGTC | 1 cut(s) | 509 |
| AluBI | AGCT | 2 cut(s) | 54, 1040 |
| AluI | AGCT | 2 cut(s) | 54, 1040 |
| Alw21I | GWGCWC | 1 cut(s) | 56 |
| Alw26I | GTCTC | 1 cut(s) | 72 |
| AlwI | GGATC | 3 cut(s) | 1028, 1041, 1410 |
| AoxI | GGCC | 4 cut(s) | 351, 764, 955, 1194 |
| ApeKI | GCWGC | 6 cut(s) | 358, 368, 443, 584, 794, 1359 |
| ApoI | RAATTY | 3 cut(s) | 598, 1364, 1502 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 875, 907 |
| AseI | ATTAAT | 1 cut(s) | 654 |
| AsiGI | ACCGGT | 1 cut(s) | 111 |
| AspLEI | GCGC | 1 cut(s) | 448 |
| AspS9I | GGNCC | 5 cut(s) | 351, 608, 803, 878, 956 |
| AsuHPI | GGTGA | 5 cut(s) | 641, 1097, 1265, 1322, 1390 |
| AsuNHI | GCTAGC | 1 cut(s) | 1118 |
| AvaII | GGWCC | 3 cut(s) | 608, 803, 878 |
| BaeGI | GKGCMC | 1 cut(s) | 1066 |
| BamHI | GGATCC | 1 cut(s) | 1033 |
| BanI | GGYRCC | 3 cut(s) | 17, 337, 1061 |
| BanII | GRGCYC | 2 cut(s) | 56, 849 |
| BbsI | GAAGAC | 2 cut(s) | 1347, 1548 |
| Bbv12I | GWGCWC | 1 cut(s) | 56 |
| BbvI | GCAGC | 6 cut(s) | 345, 355, 455, 571, 806, 1371 |
| BccI | CCATC | 1 cut(s) | 719 |
| BceAI | ACGGC | 2 cut(s) | 338, 1087 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 14, 48, 491, 525, 728, 762 |
| BciVI | GTATCC | 1 cut(s) | 625 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcoDI | GTCTC | 1 cut(s) | 72 |
| BfaI | CTAG | 3 cut(s) | 63, 1119, 1223 |
| BfuAI | ACCTGC | 3 cut(s) | 352, 617, 1192 |
| BfuI | GTATCC | 1 cut(s) | 625 |
| BglII | AGATCT | 1 cut(s) | 284 |
| BisI | GCNGC | 8 cut(s) | 184, 359, 369, 444, 585, 792, 795, 1360 |
| BlsI | GCNGC | 8 cut(s) | 185, 360, 370, 445, 586, 793, 796, 1361 |
| Bme18I | GGWCC | 3 cut(s) | 608, 803, 878 |
| BmgBI | CACGTC | 1 cut(s) | 509 |
| BmgT120I | GGNCC | 5 cut(s) | 351, 608, 803, 878, 956 |
| BmiI | GGNNCC | 7 cut(s) | 19, 339, 352, 879, 880, 1035, 1063 |
| BmrI | ACTGGG | 1 cut(s) | 1470 |
| BmsI | GCATC | 5 cut(s) | 220, 396, 456, 457, 622 |
| BmtI | GCTAGC | 1 cut(s) | 1122 |
| BmuI | ACTGGG | 1 cut(s) | 1470 |
| BoxI | GACNNNNGTC | 2 cut(s) | 84, 385 |
| BpiI | GAAGAC | 2 cut(s) | 1347, 1548 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1406, 1438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 787 |
| BpuEI | CTTGAG | 1 cut(s) | 180 |
| BsaBI | GATNNNNATC | 1 cut(s) | 222 |
| BsaI | GGTCTC | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 4 cut(s) | 82, 537, 964, 1242 |
| BsaWI | WCCGGW | 1 cut(s) | 111 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 347, 580, 594, 965, 982, 1479, 1558 |
| Bse118I | RCCGGY | 1 cut(s) | 111 |
| Bse1I | ACTGG | 2 cut(s) | 611, 1465 |
| Bse3DI | GCAATG | 3 cut(s) | 720, 1050, 1129 |
| Bse8I | GATNNNNATC | 1 cut(s) | 222 |
| BseDI | CCNNGG | 4 cut(s) | 82, 537, 964, 1242 |
| BseGI | GGATG | 1 cut(s) | 1357 |
| BseJI | GATNNNNATC | 1 cut(s) | 222 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 347, 580, 594, 965, 982, 1479, 1558 |
| BseMI | GCAATG | 3 cut(s) | 720, 1050, 1129 |
| BseMII | CTCAG | 4 cut(s) | 500, 1275, 1437, 1504 |
| BseNI | ACTGG | 2 cut(s) | 611, 1465 |
| BseRI | GAGGAG | 1 cut(s) | 815 |
| BseSI | GKGCMC | 1 cut(s) | 1066 |
| BseXI | GCAGC | 6 cut(s) | 345, 355, 455, 571, 806, 1371 |
| BseYI | CCCAGC | 1 cut(s) | 347 |
| Bsh1236I | CGCG | 3 cut(s) | 48, 84, 259 |
| Bsh1285I | CGRYCG | 1 cut(s) | 886 |
| BshFI | GGCC | 4 cut(s) | 353, 766, 957, 1196 |
| BshNI | GGYRCC | 3 cut(s) | 17, 337, 1061 |
| BshTI | ACCGGT | 1 cut(s) | 111 |
| BsiEI | CGRYCG | 1 cut(s) | 886 |
| BsiHKAI | GWGCWC | 1 cut(s) | 56 |
| BsiSI | CCGG | 1 cut(s) | 112 |
| BslFI | GGGAC | 1 cut(s) | 891 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 347, 580, 594, 965, 982, 1479, 1558 |
| BsmAI | GTCTC | 1 cut(s) | 72 |
| BsmFI | GGGAC | 1 cut(s) | 891 |
| BsmI | GAATGC | 3 cut(s) | 674, 1361, 1528 |
| BsnI | GGCC | 4 cut(s) | 353, 766, 957, 1196 |
| Bso31I | GGTCTC | 1 cut(s) | 72 |
| Bsp1286I | GDGCHC | 3 cut(s) | 56, 849, 1066 |
| Bsp143I | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| Bsp19I | CCATGG | 1 cut(s) | 1242 |
| BspACI | CCGC | 6 cut(s) | 82, 84, 184, 635, 754, 791 |
| BspANI | GGCC | 4 cut(s) | 353, 766, 957, 1196 |
| BspCNI | CTCAG | 4 cut(s) | 499, 1276, 1436, 1503 |
| BspFNI | CGCG | 3 cut(s) | 48, 84, 259 |
| BspHI | TCATGA | 1 cut(s) | 658 |
| BspLI | GGNNCC | 7 cut(s) | 19, 339, 352, 879, 880, 1035, 1063 |
| BspMI | ACCTGC | 3 cut(s) | 352, 617, 1192 |
| BspOI | GCTAGC | 1 cut(s) | 1122 |
| BspPI | GGATC | 3 cut(s) | 1028, 1041, 1410 |
| BspQI | GCTCTTC | 1 cut(s) | 462 |
| BspT107I | GGYRCC | 3 cut(s) | 17, 337, 1061 |
| BspTNI | GGTCTC | 1 cut(s) | 72 |
| BsrDI | GCAATG | 3 cut(s) | 720, 1050, 1129 |
| BsrFI | RCCGGY | 1 cut(s) | 111 |
| BsrI | ACTGG | 2 cut(s) | 611, 1465 |
| BssAI | RCCGGY | 1 cut(s) | 111 |
| BssECI | CCNNGG | 4 cut(s) | 82, 537, 964, 1242 |
| BssMI | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| BssNAI | GTATAC | 1 cut(s) | 117 |
| BssT1I | CCWWGG | 2 cut(s) | 537, 1242 |
| Bst1107I | GTATAC | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 4 cut(s) | 387, 694, 887, 1102 |
| Bst6I | CTCTTC | 2 cut(s) | 462, 1314 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 344, 632, 1295 |
| BstC8I | GCNNGC | 6 cut(s) | 314, 471, 492, 504, 1110, 1120 |
| BstDEI | CTNAG | 6 cut(s) | 486, 787, 832, 1284, 1423, 1490 |
| BstDSI | CCRYGG | 3 cut(s) | 82, 964, 1242 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 980 |
| BstF5I | GGATG | 1 cut(s) | 1357 |
| BstFNI | CGCG | 3 cut(s) | 48, 84, 259 |
| BstHHI | GCGC | 1 cut(s) | 448 |
| BstKTI | GATC | 7 cut(s) | 41, 226, 257, 287, 1036, 1303, 1405 |
| BstMAI | GTCTC | 1 cut(s) | 72 |
| BstMBI | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| BstMCI | CGRYCG | 1 cut(s) | 886 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 183, 344, 452, 632, 710, 1061, 1244, 1295 |
| BstNSI | RCATGY | 1 cut(s) | 506 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 84, 385 |
| BstSLI | GKGCMC | 1 cut(s) | 1066 |
| BstUI | CGCG | 3 cut(s) | 48, 84, 259 |
| BstV1I | GCAGC | 6 cut(s) | 345, 355, 455, 571, 806, 1371 |
| BstV2I | GAAGAC | 2 cut(s) | 1347, 1548 |
| BstX2I | RGATCY | 2 cut(s) | 284, 1033 |
| BstYI | RGATCY | 2 cut(s) | 284, 1033 |
| BstZ17I | GTATAC | 1 cut(s) | 117 |
| BsuI | GTATCC | 1 cut(s) | 625 |
| BsuRI | GGCC | 4 cut(s) | 353, 766, 957, 1196 |
| BtgI | CCRYGG | 3 cut(s) | 82, 964, 1242 |
| BtgZI | GCGATG | 1 cut(s) | 494 |
| BtrI | CACGTC | 1 cut(s) | 509 |
| BtsCI | GGATG | 1 cut(s) | 1357 |
| BtsIMutI | CAGTG | 2 cut(s) | 918, 1498 |
| BveI | ACCTGC | 3 cut(s) | 352, 617, 1192 |
| Cac8I | GCNNGC | 6 cut(s) | 314, 471, 492, 504, 1110, 1120 |
| CciI | TCATGA | 1 cut(s) | 658 |
| CfoI | GCGC | 1 cut(s) | 448 |
| Cfr10I | RCCGGY | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 5 cut(s) | 351, 608, 803, 878, 956 |
| Cfr42I | CCGCGG | 1 cut(s) | 85 |
| Csp6I | GTAC | 4 cut(s) | 318, 419, 758, 1160 |
| CspAI | ACCGGT | 1 cut(s) | 111 |
| CviAII | CATG | 9 cut(s) | 57, 334, 503, 580, 659, 1183, 1243, 1345, 1409 |
| CviQI | GTAC | 4 cut(s) | 318, 419, 758, 1160 |
| DdeI | CTNAG | 6 cut(s) | 486, 787, 832, 1284, 1423, 1490 |
| DpnI | GATC | 7 cut(s) | 40, 225, 256, 286, 1035, 1302, 1404 |
| DpnII | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| DraIII | CACNNNGTG | 1 cut(s) | 857 |
| Eam1104I | CTCTTC | 2 cut(s) | 462, 1314 |
| EarI | CTCTTC | 2 cut(s) | 462, 1314 |
| Ecl136II | GAGCTC | 1 cut(s) | 54 |
| Eco130I | CCWWGG | 2 cut(s) | 537, 1242 |
| Eco24I | GRGCYC | 2 cut(s) | 56, 849 |
| Eco31I | GGTCTC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 3 cut(s) | 608, 803, 878 |
| Eco53kI | GAGCTC | 1 cut(s) | 54 |
| Eco57I | CTGAAG | 1 cut(s) | 942 |
| EcoICRI | GAGCTC | 1 cut(s) | 54 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 980 |
| EcoO109I | RGGNCCY | 1 cut(s) | 878 |
| EcoRI | GAATTC | 1 cut(s) | 598 |
| EcoT14I | CCWWGG | 2 cut(s) | 537, 1242 |
| EcoT38I | GRGCYC | 2 cut(s) | 56, 849 |
| ErhI | CCWWGG | 2 cut(s) | 537, 1242 |
| FaeI | CATG | 9 cut(s) | 60, 337, 506, 583, 662, 1186, 1246, 1348, 1412 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1427, 1459 |
| FaqI | GGGAC | 1 cut(s) | 891 |
| FatI | CATG | 9 cut(s) | 56, 333, 502, 579, 658, 1182, 1242, 1344, 1408 |
| FauI | CCCGC | 1 cut(s) | 747 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| FblI | GTMKAC | 2 cut(s) | 116, 648 |
| Fnu4HI | GCNGC | 8 cut(s) | 184, 359, 369, 444, 585, 792, 795, 1360 |
| FokI | GGATG | 1 cut(s) | 1364 |
| FriOI | GRGCYC | 2 cut(s) | 56, 849 |
| Fsp4HI | GCNGC | 8 cut(s) | 184, 359, 369, 444, 585, 792, 795, 1360 |
| FspBI | CTAG | 3 cut(s) | 63, 1119, 1223 |
| GlaI | GCGC | 1 cut(s) | 447 |
| GluI | GCNGC | 8 cut(s) | 184, 359, 369, 444, 585, 792, 795, 1360 |
| GsaI | CCCAGC | 1 cut(s) | 351 |
| HaeIII | GGCC | 4 cut(s) | 353, 766, 957, 1196 |
| HapII | CCGG | 1 cut(s) | 112 |
| HhaI | GCGC | 1 cut(s) | 448 |
| Hin1II | CATG | 9 cut(s) | 60, 337, 506, 583, 662, 1186, 1246, 1348, 1412 |
| Hin6I | GCGC | 1 cut(s) | 446 |
| HinP1I | GCGC | 1 cut(s) | 446 |
| HincII | GTYRAC | 1 cut(s) | 1210 |
| HindII | GTYRAC | 1 cut(s) | 1210 |
| HinfI | GANTC | 3 cut(s) | 484, 1017, 1216 |
| HpaII | CCGG | 1 cut(s) | 112 |
| HphI | GGTGA | 5 cut(s) | 641, 1097, 1265, 1322, 1390 |
| Hpy166II | GTNNAC | 3 cut(s) | 117, 649, 1210 |
| Hpy188I | TCNGA | 5 cut(s) | 7, 43, 619, 1141, 1456 |
| Hpy8I | GTNNAC | 3 cut(s) | 117, 649, 1210 |
| Hpy99I | CGWCG | 2 cut(s) | 39, 513 |
| HpyAV | CCTTC | 4 cut(s) | 8, 300, 756, 976 |
| HpyCH4III | ACNGT | 4 cut(s) | 387, 694, 887, 1102 |
| HpyCH4IV | ACGT | 1 cut(s) | 508 |
| HpyCH4V | TGCA | 9 cut(s) | 409, 506, 626, 674, 713, 1186, 1201, 1359, 1478 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 183, 344, 452, 632, 710, 1061, 1244, 1295 |
| HpyF3I | CTNAG | 6 cut(s) | 486, 787, 832, 1284, 1423, 1490 |
| HpySE526I | ACGT | 1 cut(s) | 508 |
| Hsp92II | CATG | 9 cut(s) | 60, 337, 506, 583, 662, 1186, 1246, 1348, 1412 |
| HspAI | GCGC | 1 cut(s) | 446 |
| KflI | GGGWCCC | 1 cut(s) | 878 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| KspI | CCGCGG | 1 cut(s) | 85 |
| Kzo9I | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| LguI | GCTCTTC | 1 cut(s) | 462 |
| LmnI | GCTCC | 1 cut(s) | 869 |
| Lsp1109I | GCAGC | 6 cut(s) | 345, 355, 455, 571, 806, 1371 |
| LweI | GCATC | 5 cut(s) | 220, 396, 456, 457, 622 |
| MaeI | CTAG | 3 cut(s) | 63, 1119, 1223 |
| MaeII | ACGT | 1 cut(s) | 508 |
| MaeIII | GTNAC | 1 cut(s) | 1042 |
| MalI | GATC | 7 cut(s) | 40, 225, 256, 286, 1035, 1302, 1404 |
| MboI | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| MboII | GAAGA | 7 cut(s) | 156, 449, 710, 1211, 1331, 1352, 1553 |
| MfeI | CAATTG | 1 cut(s) | 555 |
| MflI | RGATCY | 2 cut(s) | 284, 1033 |
| MhlI | GDGCHC | 3 cut(s) | 56, 849, 1066 |
| MluCI | AATT | 7 cut(s) | 28, 555, 598, 1290, 1304, 1364, 1502 |
| MlyI | GAGTC | 1 cut(s) | 478 |
| MmeI | TCCRAC | 1 cut(s) | 1411 |
| MseI | TTAA | 5 cut(s) | 171, 654, 1068, 1076, 1097 |
| MspA1I | CMGCKG | 2 cut(s) | 84, 1040 |
| MspI | CCGG | 1 cut(s) | 112 |
| MunI | CAATTG | 1 cut(s) | 555 |
| Mva1269I | GAATGC | 3 cut(s) | 674, 1361, 1528 |
| MvnI | CGCG | 3 cut(s) | 48, 84, 259 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 183, 344, 452, 632, 710, 1061, 1244, 1295 |
| NcoI | CCATGG | 1 cut(s) | 1242 |
| NdeII | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| NheI | GCTAGC | 1 cut(s) | 1118 |
| NlaIII | CATG | 9 cut(s) | 60, 337, 506, 583, 662, 1186, 1246, 1348, 1412 |
| NlaIV | GGNNCC | 7 cut(s) | 19, 339, 352, 879, 880, 1035, 1063 |
| NmuCI | GTSAC | 1 cut(s) | 1042 |
| NspI | RCATGY | 1 cut(s) | 506 |
| PaeI | GCATGC | 1 cut(s) | 506 |
| PagI | TCATGA | 1 cut(s) | 658 |
| PaqCI | CACCTGC | 2 cut(s) | 352, 617 |
| PciSI | GCTCTTC | 1 cut(s) | 462 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 187 |
| PctI | GAATGC | 3 cut(s) | 674, 1361, 1528 |
| PfeI | GAWTC | 2 cut(s) | 1017, 1216 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 347, 580 |
| PinAI | ACCGGT | 1 cut(s) | 111 |
| PkrI | GCNGC | 8 cut(s) | 185, 360, 370, 445, 586, 793, 796, 1361 |
| PleI | GAGTC | 1 cut(s) | 478 |
| PpsI | GAGTC | 1 cut(s) | 478 |
| PpuMI | RGGWCCY | 1 cut(s) | 878 |
| PshAI | GACNNNNGTC | 2 cut(s) | 84, 385 |
| PshBI | ATTAAT | 1 cut(s) | 654 |
| Psp124BI | GAGCTC | 1 cut(s) | 56 |
| Psp5II | RGGWCCY | 1 cut(s) | 878 |
| PspFI | CCCAGC | 1 cut(s) | 347 |
| PspN4I | GGNNCC | 7 cut(s) | 19, 339, 352, 879, 880, 1035, 1063 |
| PspPI | GGNCC | 5 cut(s) | 351, 608, 803, 878, 956 |
| PspPPI | RGGWCCY | 1 cut(s) | 878 |
| PsuI | RGATCY | 2 cut(s) | 284, 1033 |
| PvuII | CAGCTG | 1 cut(s) | 1040 |
| RsaI | GTAC | 4 cut(s) | 319, 420, 759, 1161 |
| RsaNI | GTAC | 4 cut(s) | 318, 419, 758, 1160 |
| SacI | GAGCTC | 1 cut(s) | 56 |
| SacII | CCGCGG | 1 cut(s) | 85 |
| SapI | GCTCTTC | 1 cut(s) | 462 |
| SaqAI | TTAA | 5 cut(s) | 171, 654, 1068, 1076, 1097 |
| SatI | GCNGC | 8 cut(s) | 184, 359, 369, 444, 585, 792, 795, 1360 |
| Sau3AI | GATC | 7 cut(s) | 38, 223, 254, 284, 1033, 1300, 1402 |
| Sau96I | GGNCC | 5 cut(s) | 351, 608, 803, 878, 956 |
| SchI | GAGTC | 1 cut(s) | 478 |
| SduI | GDGCHC | 3 cut(s) | 56, 849, 1066 |
| SfaNI | GCATC | 5 cut(s) | 220, 396, 456, 457, 622 |
| Sfr303I | CCGCGG | 1 cut(s) | 85 |
| SgrBI | CCGCGG | 1 cut(s) | 85 |
| SinI | GGWCC | 3 cut(s) | 608, 803, 878 |
| SmlI | CTYRAG | 1 cut(s) | 195 |
| SmoI | CTYRAG | 1 cut(s) | 195 |
| SphI | GCATGC | 1 cut(s) | 506 |
| Sse9I | AATT | 7 cut(s) | 28, 555, 598, 1290, 1304, 1364, 1502 |
| SsiI | CCGC | 6 cut(s) | 82, 84, 184, 635, 754, 791 |
| SspI | AATATT | 2 cut(s) | 1335, 1451 |
| SspMI | CTAG | 3 cut(s) | 63, 1119, 1223 |
| SstI | GAGCTC | 1 cut(s) | 56 |
| StyI | CCWWGG | 2 cut(s) | 537, 1242 |
| TaaI | ACNGT | 4 cut(s) | 387, 694, 887, 1102 |
| TaiI | ACGT | 1 cut(s) | 511 |
| TaqI | TCGA | 4 cut(s) | 37, 190, 204, 738 |
| TasI | AATT | 7 cut(s) | 28, 555, 598, 1290, 1304, 1364, 1502 |
| TauI | GCSGC | 2 cut(s) | 186, 794 |
| TfiI | GAWTC | 2 cut(s) | 1017, 1216 |
| Tru1I | TTAA | 5 cut(s) | 171, 654, 1068, 1076, 1097 |
| Tru9I | TTAA | 5 cut(s) | 171, 654, 1068, 1076, 1097 |
| TscAI | CASTG | 2 cut(s) | 925, 1498 |
| TseFI | GTSAC | 1 cut(s) | 1042 |
| TseI | GCWGC | 6 cut(s) | 358, 368, 443, 584, 794, 1359 |
| Tsp45I | GTSAC | 1 cut(s) | 1042 |
| TspDTI | ATGAA | 3 cut(s) | 675, 1332, 1368 |
| TspGWI | ACGGA | 1 cut(s) | 953 |
| TspRI | CASTG | 2 cut(s) | 925, 1498 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 347, 580 |
| VpaK11BI | GGWCC | 3 cut(s) | 608, 803, 878 |
| VspI | ATTAAT | 1 cut(s) | 654 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 980 |
| XapI | RAATTY | 3 cut(s) | 598, 1364, 1502 |
| XceI | RCATGY | 1 cut(s) | 506 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1189 |
| XmiI | GTMKAC | 2 cut(s) | 116, 648 |
| XspI | CTAG | 3 cut(s) | 63, 1119, 1223 |